Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48498 * 109.46677 * 269.99404 * 3 2 1 5 5 H 1.48491 * 109.47260 * 29.99802 * 3 2 1 6 6 H 1.48509 * 109.47003 * 150.00063 * 3 2 1 7 7 C 1.38803 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99613 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99949 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00768 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00179 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00707 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.84554 * 35.94864 * 14 13 11 16 16 C 1.52830 * 109.85597 * 275.00187 * 14 13 11 17 17 C 1.51045 * 110.75620 * 304.27015 * 16 14 13 18 18 C 1.49132 * 117.52529 * 326.62035 * 17 16 14 19 19 H 1.08995 * 106.79925 * 124.46300 * 18 17 16 20 20 C 1.54795 * 110.93454 * 239.72706 * 18 17 16 21 21 N 1.48924 * 103.80767 * 156.91516 * 20 18 17 22 22 C 1.46896 * 111.00181 * 200.11002 * 21 20 18 23 23 C 1.50703 * 109.47277 * 176.43712 * 22 21 20 24 24 N 1.34769 * 120.00165 * 186.02549 * 23 22 21 25 25 O 1.21279 * 119.99389 * 6.02321 * 23 22 21 26 26 C 1.48906 * 103.59115 * 319.30300 * 21 20 18 27 27 C 1.51146 * 120.45481 * 3.64133 * 18 17 16 28 28 H 1.09001 * 108.47574 * 118.15608 * 27 18 17 29 29 C 1.51060 * 116.49532 * 355.41480 * 27 18 17 30 30 H 0.97001 * 120.00120 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47276 * 59.99549 * 10 9 7 32 32 H 1.09005 * 109.46760 * 299.99901 * 10 9 7 33 33 H 0.97005 * 119.99512 * 0.02562 * 13 11 10 34 34 H 1.09000 * 109.22332 * 183.93571 * 16 14 13 35 35 H 1.09001 * 109.18699 * 64.57540 * 16 14 13 36 36 H 1.09006 * 107.83067 * 204.59033 * 17 16 14 37 37 H 1.09000 * 107.83527 * 88.66044 * 17 16 14 38 38 H 1.08999 * 110.55855 * 275.50019 * 20 18 17 39 39 H 1.09002 * 110.55636 * 38.33842 * 20 18 17 40 40 H 1.09004 * 109.46959 * 296.43679 * 22 21 20 41 41 H 1.09003 * 109.46977 * 56.43867 * 22 21 20 42 42 H 0.97007 * 119.99697 * 359.97438 * 24 23 22 43 43 H 0.96993 * 120.00124 * 180.02562 * 24 23 22 44 44 H 1.09002 * 110.54843 * 281.99994 * 26 21 20 45 45 H 1.09002 * 110.54630 * 159.18934 * 26 21 20 46 46 H 1.08999 * 109.22012 * 274.94079 * 29 27 18 47 47 H 1.09005 * 109.18352 * 155.58035 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7911 -5.5024 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0008 15 1 1.4231 -7.7706 -0.6008 16 6 2.0315 -8.1575 1.4328 17 6 3.2562 -8.0113 2.3048 18 6 4.5858 -8.2413 1.6699 19 1 5.1786 -7.3438 1.8461 20 6 5.3393 -9.3993 2.3681 21 7 6.2989 -9.8741 1.3330 22 6 6.7574 -11.2385 1.6265 23 6 7.6561 -11.7164 0.5151 24 7 8.1002 -12.9888 0.5076 25 8 7.9795 -10.9560 -0.3726 26 6 5.5031 -9.8376 0.0750 27 6 4.6887 -8.5256 0.1889 28 1 5.2723 -7.7308 -0.2756 29 6 3.3857 -8.6662 -0.5624 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7314 0.8905 32 1 3.1244 -3.7314 -0.8895 33 1 3.8009 -6.1836 0.0004 34 1 1.7170 -9.2011 1.4278 35 1 1.2276 -7.5425 1.8373 36 1 3.1585 -8.7086 3.1370 37 1 3.2534 -7.0026 2.7179 38 1 5.8725 -9.0346 3.2460 39 1 4.6474 -10.1956 2.6426 40 1 7.3090 -11.2420 2.5667 41 1 5.8961 -11.9016 1.7079 42 1 7.8417 -13.5969 1.2179 43 1 8.6789 -13.2963 -0.2074 44 1 4.8363 -10.6981 0.0189 45 1 6.1613 -9.8052 -0.7933 46 1 3.0286 -9.6921 -0.4726 47 1 3.5522 -8.4350 -1.6145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330457594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -73.590671 kcal Electronic energy + Delta-G solvation = -27571.318538 eV Core-core repulsion = 23686.659013 eV Total energy + Delta-G solvation = -3884.659524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95350 -39.79542 -38.66933 -36.36471 -34.14095 -33.32393 -32.39454 -32.22795 -31.20241 -28.81073 -27.33431 -27.05952 -25.44028 -23.04969 -22.21642 -21.86975 -20.76835 -20.29906 -18.38513 -17.80460 -17.74755 -17.27560 -16.63579 -16.30855 -15.78183 -15.72984 -15.37493 -15.00489 -14.77023 -14.71070 -14.35047 -14.11075 -13.81338 -13.71165 -13.23993 -13.04896 -12.87857 -12.68423 -12.60600 -12.23759 -12.04058 -11.90276 -11.73662 -11.57657 -11.14639 -11.03472 -10.98681 -10.73136 -10.46471 -10.31645 -10.31192 -10.19571 -10.12331 -9.77360 -9.29923 -9.03516 -8.90468 -8.75437 -8.19233 -6.45750 -6.18412 -3.88330 2.20011 2.88197 3.10440 3.18019 3.25033 3.30865 3.36251 3.63702 3.79859 4.11252 4.23988 4.25422 4.45723 4.51787 4.69688 4.73727 4.78171 4.89132 5.03625 5.09029 5.16121 5.16735 5.20061 5.27131 5.30780 5.42020 5.50742 5.62145 5.70466 5.72872 5.73555 5.83422 5.94900 5.98654 6.06396 6.14638 6.18382 6.20450 6.23594 6.28430 6.47244 6.48485 6.79117 6.86242 7.63165 7.82648 7.82744 8.38790 8.71244 9.27039 10.88975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.002069 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.337246 B =13527.926243 C =14128.525117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.729 5.729 14 C 0.152 3.848 15 H 0.090 0.910 16 C -0.127 4.127 17 C -0.102 4.102 18 C -0.078 4.078 19 H 0.070 0.930 20 C 0.035 3.965 21 N -0.492 5.492 22 C 0.022 3.978 23 C 0.515 3.485 24 N -0.860 5.860 25 O -0.521 6.521 26 C 0.035 3.965 27 C -0.082 4.082 28 H 0.076 0.924 29 C -0.117 4.117 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.400 0.600 43 H 0.402 0.598 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.358 -29.149 4.909 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.394 6.394 13 N -0.383 5.383 14 C 0.047 3.953 15 H 0.108 0.892 16 C -0.166 4.166 17 C -0.140 4.140 18 C -0.098 4.098 19 H 0.088 0.912 20 C -0.093 4.093 21 N -0.216 5.216 22 C -0.110 4.110 23 C 0.299 3.701 24 N -0.425 5.425 25 O -0.396 6.396 26 C -0.093 4.093 27 C -0.101 4.101 28 H 0.094 0.906 29 C -0.155 4.155 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.228 0.772 43 H 0.233 0.767 44 H 0.059 0.941 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.811 -28.389 4.405 31.456 hybrid contribution 1.997 0.231 0.270 2.028 sum 14.808 -28.159 4.676 32.157 Atomic orbital electron populations 1.70022 1.05932 1.27388 1.46997 1.24990 0.95025 0.99006 0.94595 0.86175 0.79421 0.81608 0.78342 1.20287 1.20784 1.19700 1.22876 0.94920 0.91713 1.58769 0.90957 1.85363 1.05036 0.96282 1.96702 1.23535 1.06466 0.95610 1.04833 1.20275 0.86562 0.86270 0.74979 1.90687 1.15374 1.85605 1.47768 1.46032 1.09796 1.05102 1.77385 1.20705 0.97199 0.81117 0.96328 0.89183 1.21489 0.97905 1.01333 0.95838 1.20206 0.92884 1.02379 0.98511 1.20391 0.96489 0.98828 0.94047 0.91187 1.23631 0.93385 0.97002 0.95282 1.65630 1.33815 1.18795 1.03349 1.22187 0.98730 0.91877 0.98165 1.20541 0.80788 0.81778 0.86983 1.43876 1.54661 1.12843 1.31095 1.90764 1.56946 1.54120 1.37731 1.23630 0.95056 0.96350 0.94215 1.20858 0.96107 0.98178 0.94952 0.90566 1.21445 0.94376 0.99762 0.99914 0.92234 0.89361 0.89332 0.76893 0.91693 0.90820 0.92383 0.91987 0.89804 0.93484 0.87522 0.91825 0.77184 0.76683 0.94079 0.88441 0.90740 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 11 C 0.53 9.94 7.82 -10.99 -0.09 9.86 16 12 O -0.52 -11.71 15.55 5.56 0.09 -11.62 16 13 N -0.73 -9.80 4.45 -53.98 -0.24 -10.04 16 14 C 0.15 1.75 2.86 -68.11 -0.19 1.56 16 15 H 0.09 1.21 7.63 -51.93 -0.40 0.81 16 16 C -0.13 -1.36 5.61 -27.80 -0.16 -1.51 16 17 C -0.10 -0.95 5.11 -29.62 -0.15 -1.10 16 18 C -0.08 -0.67 2.41 -92.51 -0.22 -0.90 16 19 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 20 C 0.03 0.26 5.71 -1.75 -0.01 0.25 16 21 N -0.49 -4.20 5.21 -230.20 -1.20 -5.39 16 22 C 0.02 0.13 5.40 -4.98 -0.03 0.10 16 23 C 0.52 3.86 7.75 -10.99 -0.09 3.77 16 24 N -0.86 -2.93 8.87 31.22 0.28 -2.65 16 25 O -0.52 -6.39 15.32 5.56 0.09 -6.31 16 26 C 0.04 0.31 5.08 -1.74 -0.01 0.30 16 27 C -0.08 -0.72 2.11 -91.56 -0.19 -0.91 16 28 H 0.08 0.73 7.66 -51.93 -0.40 0.33 16 29 C -0.12 -1.03 5.10 -27.80 -0.14 -1.17 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 32 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 33 H 0.40 4.54 7.13 -40.82 -0.29 4.25 16 34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.47 7.31 -51.93 -0.38 0.09 16 37 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.30 7.62 -51.93 -0.40 -0.09 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.26 7.99 -51.93 -0.41 -0.16 16 42 H 0.40 0.09 8.83 -40.82 -0.36 -0.27 16 43 H 0.40 1.19 8.93 -40.82 -0.36 0.83 16 44 H 0.04 0.33 7.39 -51.93 -0.38 -0.05 16 45 H 0.10 1.07 6.57 -51.93 -0.34 0.73 16 46 H 0.07 0.57 7.46 -51.93 -0.39 0.19 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -37.29 383.93 -10.02 -47.31 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.45 Total: 1.58 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.86 Total: -5.78 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.43 Total: -43.74 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.17 Total: -17.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.29 -10.02 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330457594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.284 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds