Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00565 * 2 1 4 4 H 1.48499 * 109.46842 * 269.99950 * 3 2 1 5 5 H 1.48493 * 109.47310 * 29.99740 * 3 2 1 6 6 H 1.48503 * 109.47425 * 149.99991 * 3 2 1 7 7 C 1.37887 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99920 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.46507 * 120.00051 * 95.12758 * 10 9 7 12 12 C 1.50697 * 109.46914 * 270.00264 * 11 10 9 13 13 C 1.38224 * 119.61936 * 94.97752 * 12 11 10 14 14 C 1.38637 * 119.15937 * 179.79237 * 13 12 11 15 15 C 1.38669 * 118.41927 * 0.46678 * 14 13 12 16 16 C 1.38175 * 119.16333 * 359.51181 * 15 14 13 17 17 N 1.31857 * 119.61509 * 274.99641 * 12 11 10 18 18 C 1.34773 * 120.00202 * 275.12752 * 10 9 7 19 19 O 1.21542 * 120.00069 * 174.86306 * 18 10 9 20 20 C 1.47926 * 119.99885 * 354.86439 * 18 10 9 21 21 C 1.33745 * 125.55248 * 274.89167 * 20 18 10 22 22 C 1.50979 * 130.87320 * 358.98944 * 21 20 18 23 23 C 1.53846 * 106.40534 * 204.21209 * 22 21 20 24 24 C 1.52649 * 110.20382 * 306.83666 * 23 22 21 25 25 N 1.46654 * 111.72725 * 61.07626 * 24 23 22 26 26 C 1.30346 * 119.16512 * 326.10123 * 25 24 23 27 27 N 1.37111 * 131.40072 * 183.26425 * 26 25 24 28 28 N 1.38669 * 125.55581 * 94.58696 * 20 18 10 29 29 H 0.97001 * 119.99358 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47139 * 60.00146 * 9 7 2 31 31 H 1.09005 * 109.47462 * 300.00443 * 9 7 2 32 32 H 1.08997 * 109.47297 * 149.99826 * 11 10 9 33 33 H 1.09003 * 109.46667 * 29.99853 * 11 10 9 34 34 H 1.08004 * 120.42330 * 359.97438 * 13 12 11 35 35 H 1.08004 * 120.78501 * 180.23326 * 14 13 12 36 36 H 1.08004 * 120.41557 * 179.78515 * 15 14 13 37 37 H 1.08002 * 119.61646 * 180.24840 * 16 15 14 38 38 H 1.09002 * 110.06513 * 323.43377 * 22 21 20 39 39 H 1.09003 * 110.06406 * 84.98761 * 22 21 20 40 40 H 1.08992 * 109.34956 * 67.05819 * 23 22 21 41 41 H 1.09004 * 109.35319 * 186.61301 * 23 22 21 42 42 H 1.09005 * 109.02855 * 181.64959 * 24 23 22 43 43 H 1.08997 * 109.03202 * 300.56898 * 24 23 22 44 44 H 0.97005 * 126.22585 * 357.62618 * 27 26 25 45 45 H 0.97003 * 125.32579 * 359.64363 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0015 11 6 2.5935 -4.2427 1.2651 12 6 3.8032 -3.5391 1.8241 13 6 3.6377 -2.5313 2.7556 14 6 4.7574 -1.8934 3.2668 15 6 6.0067 -2.2880 2.8127 16 6 6.0942 -3.3037 1.8799 17 7 5.0074 -3.8916 1.4187 18 6 2.7190 -4.0577 -1.1612 19 8 3.5779 -4.9177 -1.1551 20 6 2.2404 -3.4995 -2.4447 21 6 1.1642 -3.9159 -3.1208 22 6 0.1781 -5.0203 -2.8252 23 6 -0.4326 -5.4308 -4.1763 24 6 -0.9877 -4.2055 -4.8979 25 7 0.0614 -3.2204 -5.1807 26 6 1.0436 -3.0782 -4.3357 27 7 2.1055 -2.2111 -4.3173 28 7 2.8310 -2.4552 -3.1401 29 1 -0.4849 0.8401 -0.0004 30 1 0.6239 -2.5575 -0.8880 31 1 0.6245 -2.5563 0.8919 32 1 2.8321 -5.2917 1.0897 33 1 1.7707 -4.1712 1.9764 34 1 2.6487 -2.2465 3.0833 35 1 4.6586 -1.1052 3.9986 36 1 6.9004 -1.8105 3.1866 37 1 7.0637 -3.6196 1.5242 38 1 0.6916 -5.8692 -2.3737 39 1 -0.6025 -4.6558 -2.1574 40 1 0.3360 -5.8959 -4.7935 41 1 -1.2379 -6.1455 -4.0066 42 1 -1.4410 -4.5214 -5.8375 43 1 -1.7510 -3.7409 -4.2738 44 1 2.3156 -1.5476 -4.9931 45 1 3.6228 -1.9707 -2.8585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362055831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 104.784865 kcal Electronic energy + Delta-G solvation = -30585.070435 eV Core-core repulsion = 26604.994654 eV Total energy + Delta-G solvation = -3980.075781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66177 -39.88432 -38.58477 -36.28621 -35.30444 -32.99072 -32.63378 -32.07856 -31.32330 -29.90669 -29.57247 -27.77667 -26.46069 -24.78496 -23.49623 -23.15640 -22.57040 -22.17276 -21.28516 -18.48494 -18.35591 -17.79025 -16.87313 -16.54708 -16.29500 -15.91770 -15.52218 -15.42093 -15.19090 -15.01027 -14.54310 -14.08137 -13.86359 -13.53501 -13.34623 -13.04251 -12.95460 -12.86464 -12.64163 -12.52225 -12.36460 -11.82575 -11.74506 -11.52350 -11.43664 -11.11443 -11.06077 -10.89413 -10.72899 -10.39299 -10.01446 -9.90753 -9.64681 -9.50130 -9.08513 -8.76996 -8.70284 -8.60965 -8.35330 -7.97984 -6.60369 -6.27336 -4.33795 1.38002 1.63914 1.98183 2.17488 3.08911 3.10738 3.19929 3.21438 3.41360 3.70286 4.20230 4.23413 4.44108 4.62777 4.88574 5.05709 5.07652 5.09689 5.18653 5.35032 5.39830 5.43365 5.46811 5.57372 5.68799 5.75539 5.82108 6.03664 6.04254 6.08347 6.15985 6.26813 6.37802 6.41599 6.43272 6.47814 6.50168 6.51741 6.63490 7.01136 7.08150 7.17220 7.31145 7.64040 7.71328 7.94097 7.99434 8.14353 8.38711 8.57466 8.74676 8.78348 9.32740 10.79790 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.004921 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.929546 B = 5688.946349 C = 7138.054424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.234 3.766 10 N -0.575 5.575 11 C 0.171 3.829 12 C 0.121 3.879 13 C -0.132 4.132 14 C -0.083 4.083 15 C -0.179 4.179 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.579 3.421 19 O -0.526 6.526 20 C 0.186 3.814 21 C -0.267 4.267 22 C -0.033 4.033 23 C -0.142 4.142 24 C 0.084 3.916 25 N -0.633 5.633 26 C 0.439 3.561 27 N -0.496 5.496 28 N -0.491 5.491 29 H 0.265 0.735 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.443 0.557 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -5.355 2.027 7.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.114 3.886 10 N -0.306 5.306 11 C 0.047 3.953 12 C -0.018 4.018 13 C -0.152 4.152 14 C -0.109 4.109 15 C -0.199 4.199 16 C -0.070 4.070 17 N -0.169 5.169 18 C 0.362 3.638 19 O -0.402 6.402 20 C 0.070 3.930 21 C -0.284 4.284 22 C -0.072 4.072 23 C -0.181 4.181 24 C -0.047 4.047 25 N -0.368 5.368 26 C 0.166 3.834 27 N -0.230 5.230 28 N -0.215 5.215 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.290 0.710 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.745 -5.894 0.584 7.589 hybrid contribution 0.976 2.378 1.182 2.829 sum 5.721 -3.516 1.766 6.944 Atomic orbital electron populations 1.69901 1.05845 1.27223 1.49103 1.24847 0.94711 0.98852 0.94847 0.86657 0.79918 0.83626 0.78230 1.20736 1.20990 1.19920 1.21272 0.92983 0.90157 1.52455 0.92649 1.19615 0.87358 0.82240 0.99341 1.48134 1.44498 1.34550 1.03402 1.20215 0.92569 0.96890 0.85651 1.21562 0.93224 0.94273 0.92744 1.21995 0.99999 0.95818 0.97407 1.21512 0.92529 0.98265 0.98603 1.22053 0.98282 0.99562 1.00047 1.22652 0.97165 0.93203 0.94017 1.67575 0.98312 1.27672 1.23306 1.17398 0.81463 0.82354 0.82578 1.90823 1.29953 1.32570 1.86808 1.19355 0.93252 0.88294 0.92120 1.21079 1.00956 1.06354 0.99994 1.20018 0.95759 0.94494 0.96892 1.21956 1.00600 0.98603 0.96907 1.21623 0.93789 0.90629 0.98667 1.72150 1.05945 1.28454 1.30202 1.19723 0.87066 0.86631 0.89978 1.42834 1.24749 1.39532 1.15885 1.43656 1.28694 1.35537 1.13630 0.92502 0.93593 0.94205 0.88963 0.88818 0.84528 0.85368 0.85593 0.83521 0.91227 0.90836 0.92058 0.91505 0.91119 0.92835 0.71032 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.28 13.29 55.43 0.74 -22.54 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.53 -12.51 9.34 -34.44 -0.32 -12.83 16 8 H 0.06 1.36 7.81 -52.49 -0.41 0.95 16 9 C 0.23 5.08 5.01 -5.20 -0.03 5.06 16 10 N -0.58 -11.06 2.45 -177.52 -0.44 -11.50 16 11 C 0.17 2.87 5.72 -5.19 -0.03 2.84 16 12 C 0.12 2.09 6.36 -82.59 -0.53 1.56 16 13 C -0.13 -2.09 9.72 -39.44 -0.38 -2.48 16 14 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 15 C -0.18 -2.39 10.11 -39.45 -0.40 -2.79 16 16 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 17 N -0.46 -8.21 10.27 -9.48 -0.10 -8.30 16 18 C 0.58 11.58 7.40 -12.29 -0.09 11.49 16 19 O -0.53 -11.42 16.74 5.33 0.09 -11.33 16 20 C 0.19 3.59 5.21 -82.38 -0.43 3.16 16 21 C -0.27 -5.04 5.61 -102.03 -0.57 -5.62 16 22 C -0.03 -0.55 6.33 -27.31 -0.17 -0.72 16 23 C -0.14 -2.07 5.96 -26.47 -0.16 -2.23 16 24 C 0.08 1.35 6.93 -4.14 -0.03 1.33 16 25 N -0.63 -11.98 11.06 -58.71 -0.65 -12.63 16 26 C 0.44 8.30 8.35 -154.87 -1.29 7.01 16 27 N -0.50 -8.29 7.49 32.37 0.24 -8.05 16 28 N -0.49 -8.61 7.44 33.19 0.25 -8.36 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.05 1.11 6.64 -51.93 -0.34 0.76 16 31 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 32 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 33 H 0.09 1.34 7.76 -51.93 -0.40 0.93 16 34 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 35 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.44 5.99 8.96 -182.35 -1.63 4.35 16 45 H 0.44 7.02 8.96 -182.35 -1.63 5.39 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -31.12 383.33 -12.82 -43.94 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.59 Total: 11.29 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -5.12 Total: 6.99 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: 0.04 Total: -71.38 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.12 -12.82 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362055831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.728 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds