Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47428 * 125.64994 * 0.02637 * 13 11 10 15 15 C 1.54910 * 104.83072 * 204.09263 * 14 13 11 16 16 C 1.55156 * 101.58230 * 322.99086 * 15 14 13 17 17 H 1.09000 * 110.72079 * 277.13942 * 16 15 14 18 18 N 1.46899 * 110.72029 * 154.04644 * 16 15 14 19 19 C 1.46901 * 111.00240 * 155.00046 * 18 16 15 20 20 C 1.50696 * 109.47231 * 180.02562 * 19 18 16 21 21 O 1.21282 * 119.99726 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00046 * 179.97438 * 20 19 18 23 23 C 1.47025 * 125.64865 * 359.69228 * 22 20 19 24 24 C 1.54305 * 107.27633 * 180.96793 * 23 22 20 25 25 C 1.55160 * 102.86517 * 22.52410 * 24 23 22 26 26 C 1.47424 * 125.64919 * 179.97438 * 22 20 19 27 27 C 1.47026 * 125.64860 * 179.71935 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 30 30 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 31 31 H 1.09002 * 110.36521 * 322.92923 * 14 13 11 32 32 H 1.08995 * 110.36222 * 85.25412 * 14 13 11 33 33 H 1.09001 * 111.00638 * 81.06842 * 15 14 13 34 34 H 1.09000 * 111.00278 * 204.87840 * 15 14 13 35 35 H 1.00901 * 110.99867 * 31.04244 * 18 16 15 36 36 H 1.09008 * 109.46712 * 300.00023 * 19 18 16 37 37 H 1.09000 * 109.47095 * 59.99729 * 19 18 16 38 38 H 1.09005 * 109.87899 * 300.51533 * 23 22 20 39 39 H 1.08995 * 109.87921 * 61.67538 * 23 22 20 40 40 H 1.09008 * 110.92441 * 264.11146 * 24 23 22 41 41 H 1.09003 * 110.59220 * 140.78476 * 24 23 22 42 42 H 1.09007 * 111.00504 * 206.22969 * 25 24 23 43 43 H 1.08999 * 111.03602 * 82.39058 * 25 24 23 44 44 H 1.08997 * 110.36884 * 274.67984 * 26 22 20 45 45 H 1.08999 * 110.36385 * 36.89005 * 26 22 20 46 46 H 1.09000 * 109.87879 * 298.39498 * 27 13 11 47 47 H 1.09006 * 109.88194 * 59.55906 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2250 -5.7195 0.0006 15 6 6.1403 -6.8095 0.6121 16 6 7.5230 -6.4201 0.0257 17 1 7.6411 -6.8197 -0.9815 18 7 8.6080 -6.8876 0.8987 19 6 9.8518 -7.0732 0.1394 20 6 10.9393 -7.5526 1.0660 21 8 10.7017 -7.7225 2.2431 22 7 12.1758 -7.7926 0.5866 23 6 12.5977 -7.6352 -0.8130 24 6 14.0830 -8.0457 -0.8929 25 6 14.2569 -8.9569 0.3508 26 6 13.3279 -8.2620 1.3776 27 6 7.4650 -4.8783 -0.0074 28 1 -0.4850 0.8401 0.0004 29 1 3.6440 -3.4315 0.8904 30 1 3.6433 -3.4318 -0.8896 31 1 4.3368 -5.5804 0.6169 32 1 4.9432 -5.9881 -1.0175 33 1 6.1464 -6.7492 1.7004 34 1 5.8401 -7.8033 0.2797 35 1 8.3466 -7.7364 1.3776 36 1 9.6915 -7.8125 -0.6454 37 1 10.1483 -6.1252 -0.3096 38 1 11.9979 -8.2797 -1.4557 39 1 12.4856 -6.5952 -1.1192 40 1 14.7324 -7.1728 -0.8252 41 1 14.2781 -8.6027 -1.8093 42 1 15.2911 -8.9544 0.6955 43 1 13.9192 -9.9721 0.1424 44 1 13.8387 -7.4183 1.8415 45 1 13.0020 -8.9718 2.1379 46 1 7.9450 -4.5066 -0.9127 47 1 7.9632 -4.4715 0.8727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480105236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = -57.072384 kcal Electronic energy + Delta-G solvation = -26512.413007 eV Core-core repulsion = 22628.469770 eV Total energy + Delta-G solvation = -3883.943237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52203 -39.85538 -38.08264 -37.45491 -35.01095 -32.42136 -32.35180 -31.14647 -29.74432 -29.70107 -28.25105 -26.27926 -25.56635 -23.85180 -22.97314 -21.73660 -21.06226 -19.77302 -19.34295 -17.83203 -17.51373 -17.20798 -16.78194 -16.60220 -16.26448 -15.33235 -15.08774 -14.92838 -14.78928 -14.64934 -14.16882 -14.03040 -13.89775 -13.72817 -13.50698 -13.21486 -13.02371 -12.86443 -12.79446 -12.50838 -12.42390 -11.97376 -11.91126 -11.84518 -11.78055 -11.56469 -11.37058 -11.24761 -11.09076 -10.98307 -10.58954 -10.20869 -9.83985 -9.49989 -9.14602 -8.98344 -8.91568 -8.53869 -8.47061 -6.89726 -6.27112 -3.98623 2.23408 2.39145 2.71064 2.99335 3.19931 3.35525 3.52744 3.59203 3.71718 3.89606 3.95830 4.14596 4.27714 4.32398 4.35035 4.38287 4.62698 4.71414 4.73394 4.76443 4.81030 4.88863 5.01158 5.01724 5.12042 5.13171 5.18468 5.24767 5.25115 5.28461 5.35489 5.44517 5.52401 5.53491 5.58093 5.73784 5.77576 5.86632 5.87700 6.03707 6.37464 6.50542 6.87584 7.03947 7.61145 7.76607 7.95939 8.43256 8.48150 9.19210 10.82052 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027969 B = 0.001732 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.877524 B =16161.759623 C =16681.212869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.624 5.624 14 C 0.102 3.898 15 C -0.135 4.135 16 C 0.076 3.924 17 H 0.065 0.935 18 N -0.663 5.663 19 C 0.046 3.954 20 C 0.528 3.472 21 O -0.522 6.522 22 N -0.625 5.625 23 C 0.097 3.903 24 C -0.133 4.133 25 C -0.134 4.134 26 C 0.105 3.895 27 C 0.118 3.882 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.356 0.644 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.745 -23.770 -3.850 35.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.200 1.200 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.392 6.392 13 N -0.361 5.361 14 C -0.022 4.022 15 C -0.174 4.174 16 C -0.034 4.034 17 H 0.083 0.917 18 N -0.297 5.297 19 C -0.087 4.087 20 C 0.317 3.683 21 O -0.397 6.397 22 N -0.361 5.361 23 C -0.026 4.026 24 C -0.170 4.170 25 C -0.172 4.172 26 C -0.018 4.018 27 C -0.006 4.006 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.177 0.823 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.623 -21.625 -2.959 35.205 hybrid contribution -0.960 -1.151 -0.604 1.616 sum 26.663 -22.776 -3.563 35.248 Atomic orbital electron populations 1.69941 1.05901 1.27738 1.48129 1.24706 0.94444 0.98943 0.93166 0.86736 0.81898 0.83271 0.79970 1.19185 1.15920 1.19951 1.22313 0.88253 0.97538 1.58745 0.89391 1.84797 1.09277 1.00111 1.97413 1.23255 0.93693 1.04176 1.05646 1.19975 0.90528 0.80598 0.75373 1.90706 1.58878 1.41241 1.48348 1.48390 1.06889 1.05339 1.75511 1.22273 0.94940 0.83819 1.01128 1.23003 0.93396 0.98704 1.02272 1.22560 0.90431 0.95271 0.95182 0.91708 1.59996 1.01726 1.38961 1.28981 1.21859 0.90081 1.02186 0.94547 1.20271 0.81855 0.77300 0.88910 1.90742 1.80926 1.51137 1.16891 1.48539 1.09895 1.67692 1.10023 1.22089 0.96082 1.01659 0.82796 1.22643 0.94973 1.00327 0.99103 1.22804 1.00136 0.99171 0.95134 1.22229 0.86125 0.98758 0.94655 1.21853 0.82923 0.93256 1.02557 0.91963 0.88549 0.88562 0.89805 0.91126 0.89201 0.89710 0.82299 0.92103 0.87798 0.91230 0.90997 0.90233 0.89792 0.89617 0.90541 0.91315 0.90311 0.91928 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 10 C -0.12 -2.36 5.16 36.01 0.19 -2.17 16 11 C 0.55 10.46 7.87 -10.99 -0.09 10.37 16 12 O -0.52 -11.88 16.19 5.56 0.09 -11.79 16 13 N -0.62 -8.95 3.33 -170.51 -0.57 -9.51 16 14 C 0.10 1.05 6.69 -2.53 -0.02 1.03 16 15 C -0.14 -1.06 6.47 -24.58 -0.16 -1.22 16 16 C 0.08 0.64 3.27 -65.88 -0.22 0.42 16 17 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16 18 N -0.66 -5.90 5.96 -106.05 -0.63 -6.54 16 19 C 0.05 0.33 5.22 -4.98 -0.03 0.30 16 20 C 0.53 5.04 7.89 -10.99 -0.09 4.96 16 21 O -0.52 -7.13 16.46 5.56 0.09 -7.04 16 22 N -0.62 -4.41 3.33 -170.52 -0.57 -4.98 16 23 C 0.10 0.38 6.48 -3.07 -0.02 0.36 16 24 C -0.13 -0.34 6.95 -24.91 -0.17 -0.51 16 25 C -0.13 -0.43 7.08 -24.57 -0.17 -0.60 16 26 C 0.10 0.64 6.91 -2.52 -0.02 0.62 16 27 C 0.12 1.45 6.64 -3.06 -0.02 1.43 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.82 7.85 -51.91 -0.41 1.41 16 30 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 31 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.36 3.05 8.13 -39.29 -0.32 2.73 16 36 H 0.06 0.30 8.08 -51.92 -0.42 -0.12 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.56 8.03 -51.93 -0.42 0.15 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -37.62 396.24 -9.99 -47.61 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.85 Total: -2.26 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.59 Total: 2.85 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.99 Total: -46.99 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.62 -9.99 -47.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480105236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.464 kcal (2) G-P(sol) polarization free energy of solvation -37.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds