Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47204 * 239.99829 * 3 2 1 5 5 H 1.48494 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46895 * 119.99994 * 3 2 1 7 7 C 1.38816 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99979 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99524 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99692 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47160 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91907 * 57.44700 * 11 10 9 13 13 C 1.55155 * 111.00314 * 181.35011 * 11 10 9 14 14 C 1.54327 * 102.93990 * 153.57290 * 13 11 10 15 15 N 1.47015 * 107.27408 * 337.80736 * 14 13 11 16 16 C 1.34777 * 125.65042 * 178.96544 * 15 14 13 17 17 O 1.21568 * 119.99977 * 179.97438 * 16 15 14 18 18 C 1.47761 * 120.00148 * 359.96890 * 16 15 14 19 19 C 1.40590 * 126.04908 * 180.02562 * 18 16 15 20 20 N 1.31244 * 106.62848 * 179.97438 * 19 18 16 21 21 N 1.40107 * 107.17733 * 0.02562 * 20 19 18 22 22 C 1.40139 * 125.56654 * 179.97438 * 21 20 19 23 23 C 1.38862 * 120.06662 * 179.74861 * 22 21 20 24 24 C 1.38114 * 119.92733 * 179.72044 * 23 22 21 25 25 C 1.38280 * 120.07152 * 0.56440 * 24 23 22 26 26 C 1.38285 * 120.13793 * 359.71268 * 25 24 23 27 27 C 1.38111 * 120.06661 * 0.02562 * 26 25 24 28 28 N 1.28712 * 108.86234 * 359.76592 * 21 20 19 29 29 C 1.47426 * 108.70225 * 358.93990 * 15 14 13 30 30 H 0.97001 * 120.00271 * 0.02562 * 1 2 3 31 31 H 0.96989 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46894 * 59.99555 * 10 9 7 33 33 H 1.09005 * 109.47124 * 300.00044 * 10 9 7 34 34 H 1.08996 * 110.72119 * 35.21423 * 13 11 10 35 35 H 1.08996 * 110.87365 * 272.00688 * 13 11 10 36 36 H 1.08999 * 109.87976 * 218.38614 * 14 13 11 37 37 H 1.09004 * 109.88011 * 97.22356 * 14 13 11 38 38 H 1.08005 * 126.68395 * 359.95006 * 19 18 16 39 39 H 1.07995 * 120.03359 * 0.02562 * 23 22 21 40 40 H 1.08002 * 119.96259 * 180.25165 * 24 23 22 41 41 H 1.08003 * 119.93291 * 179.74207 * 25 24 23 42 42 H 1.07994 * 119.96977 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.03677 * 180.02562 * 27 26 25 44 44 H 1.08998 * 110.36718 * 142.96820 * 29 15 14 45 45 H 1.09005 * 110.36600 * 265.29381 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0027 11 6 1.0639 -4.8197 0.0031 12 1 0.3949 -4.7601 -0.8554 13 6 1.8032 -6.1833 0.0385 14 6 0.7717 -7.1185 0.7041 15 7 -0.1564 -6.2718 1.4676 16 6 -1.2155 -6.7088 2.1774 17 8 -1.9175 -5.9148 2.7731 18 6 -1.5235 -8.1529 2.2316 19 6 -2.5909 -8.7456 2.9288 20 7 -2.5057 -10.0382 2.7177 21 7 -1.3919 -10.2505 1.8946 22 6 -0.9463 -11.4958 1.4313 23 6 0.1730 -11.5738 0.6132 24 6 0.6131 -12.8030 0.1629 25 6 -0.0665 -13.9543 0.5164 26 6 -1.1849 -13.8794 1.3262 27 6 -1.6268 -12.6536 1.7842 28 7 -0.8475 -9.1146 1.6300 29 6 0.2635 -4.8654 1.3286 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6848 -3.7136 0.8927 33 1 2.6848 -3.7153 -0.8872 34 1 2.7083 -6.1158 0.6420 35 1 2.0382 -6.5239 -0.9699 36 1 1.2787 -7.8116 1.3754 37 1 0.2256 -7.6718 -0.0600 38 1 -3.3356 -8.2365 3.5226 39 1 0.7018 -10.6746 0.3334 40 1 1.4860 -12.8647 -0.4701 41 1 0.2772 -14.9140 0.1596 42 1 -1.7133 -14.7803 1.6010 43 1 -2.5000 -12.5957 2.4170 44 1 -0.6079 -4.2135 1.2683 45 1 0.8986 -4.5747 2.1655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480676372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = 127.227469 kcal Electronic energy + Delta-G solvation = -28292.934665 eV Core-core repulsion = 24313.832069 eV Total energy + Delta-G solvation = -3979.102596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.01660 -39.95011 -39.51234 -37.58277 -34.68862 -34.25398 -32.99039 -32.08946 -31.45698 -30.46165 -29.92846 -28.61207 -26.09550 -24.81671 -23.99986 -23.40407 -22.17710 -21.97441 -21.64385 -20.11540 -19.64560 -18.60958 -17.41221 -16.94933 -16.76951 -16.71769 -16.00715 -15.70412 -15.51440 -14.95488 -14.67711 -14.50972 -14.43689 -14.02457 -13.71416 -13.42625 -13.35805 -13.16635 -12.79599 -12.58418 -12.55121 -12.21877 -12.03424 -11.88346 -11.68637 -11.34748 -11.17908 -11.13326 -10.83093 -10.64521 -10.60329 -10.56971 -10.39321 -10.18789 -10.01474 -9.65594 -9.59490 -8.85820 -8.79783 -8.54359 -6.91077 -5.73447 -3.03007 0.09995 0.75747 1.35942 1.51613 1.58734 2.89548 3.12121 3.22870 3.36692 3.46382 3.50535 3.51974 4.25485 4.31382 4.40982 4.52588 4.56954 4.61799 4.70613 4.77165 4.88892 4.90208 5.02538 5.08934 5.24329 5.38211 5.41015 5.51757 5.56567 5.60947 5.70769 5.75638 5.80686 5.89323 5.91858 5.98244 6.05218 6.06142 6.10496 6.25391 6.39580 6.41666 6.48818 6.69649 6.83540 7.37332 7.50672 7.71528 8.06520 8.44671 9.55865 10.12706 10.47086 11.49084 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.002058 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.664075 B =13602.289809 C =14664.875028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.126 4.126 14 C 0.109 3.891 15 N -0.602 5.602 16 C 0.614 3.386 17 O -0.524 6.524 18 C -0.043 4.043 19 C 0.082 3.918 20 N -0.280 5.280 21 N -0.165 5.165 22 C 0.156 3.844 23 C -0.111 4.111 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.100 4.100 27 C -0.108 4.108 28 N -0.198 5.198 29 C 0.117 3.883 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.220 0.780 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.087 0.913 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 -31.807 1.642 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.165 4.165 14 C -0.015 4.015 15 N -0.335 5.335 16 C 0.399 3.601 17 O -0.398 6.398 18 C -0.210 4.210 19 C -0.109 4.109 20 N -0.107 5.107 21 N -0.057 5.057 22 C 0.065 3.935 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.119 4.119 27 C -0.129 4.129 28 N -0.042 5.042 29 C -0.004 4.004 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.106 0.894 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.679 -32.441 1.621 32.488 hybrid contribution -0.166 1.738 0.300 1.772 sum -0.846 -30.703 1.921 30.774 Atomic orbital electron populations 1.69646 1.05095 1.25824 1.57404 1.24755 0.95519 0.97717 1.02920 0.86265 0.78505 0.83578 0.77796 1.21315 1.21702 1.21267 1.19158 0.90975 0.84127 1.43088 0.91214 1.42359 1.05914 0.99912 1.89567 1.20587 0.92702 0.84759 0.98235 1.22592 0.97864 0.94841 0.97180 0.89639 1.22692 0.97800 0.94685 1.01319 1.22093 0.90916 0.93342 0.95106 1.48354 1.26900 1.09842 1.48371 1.16242 0.80268 0.84085 0.79532 1.90865 1.49400 1.54349 1.45220 1.23040 0.98362 0.95044 1.04571 1.25181 0.98151 0.89724 0.97888 1.78024 1.04204 1.17427 1.11041 1.48329 1.18637 1.04036 1.34727 1.17407 0.96787 0.79842 0.99427 1.21011 0.95110 0.99872 0.97216 1.21092 1.00004 0.91226 0.99386 1.21360 0.95489 0.98991 0.97794 1.21076 0.96676 0.96941 0.97221 1.20948 1.00612 0.90367 1.01019 1.73884 1.21221 0.91820 1.17250 1.22418 0.99862 0.80216 0.97933 0.93408 0.78176 0.95978 0.95769 0.90280 0.89933 0.91287 0.91181 0.76344 0.84043 0.84505 0.85065 0.84653 0.84129 0.89421 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.35 5.45 -59.91 -0.33 -18.68 16 10 C 0.17 3.17 5.71 -4.04 -0.02 3.15 16 11 C -0.11 -1.63 3.10 -88.47 -0.27 -1.91 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.13 -1.46 6.42 -24.90 -0.16 -1.62 16 14 C 0.11 1.27 5.53 -3.07 -0.02 1.26 16 15 N -0.60 -8.94 3.33 -171.66 -0.57 -9.51 16 16 C 0.61 9.65 7.86 -12.37 -0.10 9.55 16 17 O -0.52 -9.78 17.16 5.31 0.09 -9.69 16 18 C -0.04 -0.58 6.95 -82.99 -0.58 -1.15 16 19 C 0.08 0.94 11.91 -16.92 -0.20 0.74 16 20 N -0.28 -3.29 11.90 30.85 0.37 -2.92 16 21 N -0.17 -1.93 4.44 32.48 0.14 -1.79 16 22 C 0.16 1.49 6.74 -83.60 -0.56 0.93 16 23 C -0.11 -0.87 9.61 -39.40 -0.38 -1.24 16 24 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 25 C -0.12 -0.57 10.04 -39.55 -0.40 -0.96 16 26 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 27 C -0.11 -0.84 9.65 -39.40 -0.38 -1.22 16 28 N -0.20 -2.43 8.75 33.29 0.29 -2.14 16 29 C 0.12 1.95 6.08 -2.53 -0.02 1.93 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.38 10.20 7.53 -40.82 -0.31 9.89 16 32 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 37 H 0.07 0.78 7.64 -51.93 -0.40 0.39 16 38 H 0.22 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.14 1.06 7.67 -52.49 -0.40 0.66 16 40 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 43 H 0.14 1.06 7.67 -52.49 -0.40 0.65 16 44 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 45 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -34.26 383.37 -8.74 -43.00 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.09 Total: 5.97 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.13 Total: 0.18 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.63 Total: -62.77 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.26 -8.74 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480676372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.231 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds