Wall clock time and date at job start Sat Apr 11 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21624 * 119.99992 * 0.02562 * 14 13 11 16 16 C 1.47316 * 120.00310 * 180.02562 * 14 13 11 17 17 C 1.37913 * 126.80337 * 0.02841 * 16 14 13 18 18 N 1.34198 * 107.89373 * 180.02562 * 17 16 14 19 19 H 0.96996 * 125.16337 * 179.97438 * 18 17 16 20 20 N 1.39773 * 109.66813 * 359.97438 * 18 17 16 21 21 C 1.31378 * 109.06978 * 359.70539 * 20 18 17 22 22 C 1.48237 * 126.51348 * 180.28061 * 21 20 18 23 23 C 1.39385 * 119.73492 * 334.92100 * 22 21 20 24 24 C 1.38383 * 119.06853 * 179.74768 * 23 22 21 25 25 C 1.38795 * 118.51211 * 0.52210 * 24 23 22 26 26 C 1.38250 * 119.37736 * 359.72085 * 25 24 23 27 27 N 1.31761 * 120.89690 * 0.02562 * 26 25 24 28 28 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 29 29 C 1.53002 * 117.50022 * 248.74910 * 28 11 10 30 30 C 1.52997 * 117.50076 * 180.08715 * 28 11 10 31 31 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 34 34 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 35 35 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 36 36 H 1.07998 * 126.05389 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.46521 * 359.97438 * 23 22 21 38 38 H 1.07997 * 120.74637 * 180.25923 * 24 23 22 39 39 H 1.08010 * 120.31037 * 179.70392 * 25 24 23 40 40 H 1.07998 * 119.55330 * 180.02562 * 26 25 24 41 41 H 1.09003 * 115.54905 * 34.41348 * 28 11 10 42 42 H 1.09000 * 117.49650 * 359.97438 * 29 28 11 43 43 H 1.09001 * 117.49817 * 145.01411 * 29 28 11 44 44 H 1.08996 * 117.49862 * 214.97497 * 30 28 11 45 45 H 1.08996 * 117.50355 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4214 -5.8627 0.0912 16 6 -2.0056 -5.0926 2.2141 17 6 -1.7668 -4.4179 3.3930 18 7 -2.8624 -4.5276 4.1601 19 1 -2.9650 -4.1449 5.0455 20 7 -3.8332 -5.2769 3.4895 21 6 -3.3653 -5.6318 2.3143 22 6 -4.0756 -6.4298 1.2865 23 6 -5.0935 -7.3014 1.6696 24 6 -5.7509 -8.0357 0.6982 25 6 -5.3613 -7.8826 -0.6251 26 6 -4.3397 -7.0037 -0.9339 27 7 -3.7334 -6.3125 0.0099 28 6 1.8248 -6.1411 0.1235 29 6 1.8349 -7.0690 -1.0930 30 6 1.0023 -7.4311 0.1394 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6855 -3.7140 -0.8911 34 1 2.6842 -3.7148 0.8888 35 1 0.4162 -4.1777 1.9152 36 1 -0.8585 -3.8947 3.6531 37 1 -5.3679 -7.3996 2.7096 38 1 -6.5465 -8.7159 0.9642 39 1 -5.8514 -8.4449 -1.4062 40 1 -4.0345 -6.8820 -1.9627 41 1 2.7234 -6.1095 0.7397 42 1 1.2991 -6.7382 -1.9828 43 1 2.7399 -7.6481 -1.2769 44 1 1.3599 -8.2483 0.7658 45 1 -0.0809 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483564685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:37 Heat of formation + Delta-G solvation = 128.755096 kcal Electronic energy + Delta-G solvation = -29469.329007 eV Core-core repulsion = 25490.292654 eV Total energy + Delta-G solvation = -3979.036353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16492 -39.73689 -39.16614 -36.76567 -34.88604 -33.30860 -32.89524 -32.34180 -31.24518 -30.11345 -30.01184 -27.71832 -24.30375 -24.01004 -23.54462 -22.83272 -21.98244 -21.41849 -20.67376 -20.01604 -19.56587 -18.32884 -17.11065 -16.79215 -16.14430 -15.95700 -15.65835 -15.57905 -15.14552 -14.88304 -14.64246 -14.25470 -14.02372 -13.67814 -13.49653 -13.26361 -13.18026 -13.06867 -12.75872 -12.55509 -12.03178 -11.80473 -11.54533 -11.16054 -11.10144 -10.90898 -10.85681 -10.77993 -10.30974 -10.12194 -9.98923 -9.85168 -9.77043 -9.62731 -9.36263 -8.96516 -8.92033 -8.87591 -8.48800 -8.30773 -6.92133 -5.75183 -3.04843 0.77222 1.36037 1.62821 2.31595 2.57828 3.42480 3.48650 3.50850 3.60810 3.84259 3.99486 4.09173 4.32277 4.52050 4.58362 4.80359 4.85434 4.98434 5.01668 5.08871 5.18792 5.30011 5.36379 5.41823 5.50755 5.56100 5.57089 5.68505 5.76730 5.90769 5.95339 6.02785 6.04257 6.11249 6.20312 6.28812 6.32534 6.48077 6.60694 6.66445 6.69966 6.81020 7.01681 7.16373 7.37746 7.70765 8.15362 8.17959 8.42416 8.93291 9.54384 10.11776 10.47572 11.46786 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003430 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.529533 B = 8162.462640 C = 9237.507357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.174 3.826 12 H 0.088 0.912 13 N -0.711 5.711 14 C 0.587 3.413 15 O -0.505 6.505 16 C -0.248 4.248 17 C 0.104 3.896 18 N -0.462 5.462 19 H 0.444 0.556 20 N -0.279 5.279 21 C 0.168 3.832 22 C 0.191 3.809 23 C -0.145 4.145 24 C -0.087 4.087 25 C -0.169 4.169 26 C 0.103 3.897 27 N -0.402 5.402 28 C -0.161 4.161 29 C -0.173 4.173 30 C -0.183 4.183 31 H 0.254 0.746 32 H 0.387 0.613 33 H 0.033 0.967 34 H 0.022 0.978 35 H 0.396 0.604 36 H 0.191 0.809 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -17.597 6.572 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.069 3.931 12 H 0.106 0.894 13 N -0.362 5.362 14 C 0.373 3.627 15 O -0.381 6.381 16 C -0.263 4.263 17 C -0.045 4.045 18 N -0.169 5.169 19 H 0.288 0.712 20 N -0.102 5.102 21 C -0.001 4.001 22 C 0.052 3.948 23 C -0.166 4.166 24 C -0.113 4.113 25 C -0.190 4.190 26 C -0.056 4.056 27 N -0.111 5.111 28 C -0.181 4.181 29 C -0.210 4.210 30 C -0.220 4.220 31 H 0.064 0.936 32 H 0.222 0.778 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.230 0.770 36 H 0.208 0.792 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.743 -17.381 6.408 20.077 hybrid contribution 0.414 1.034 0.685 1.308 sum -7.329 -16.347 7.093 19.267 Atomic orbital electron populations 1.69688 1.05025 1.25442 1.57592 1.24735 0.95469 0.97595 1.03054 0.86153 0.78788 0.84299 0.77147 1.20592 1.21909 1.21992 1.19254 0.91013 0.84102 1.42735 0.91168 1.42371 1.06095 0.99671 1.89462 1.20909 0.93078 0.85264 0.98720 1.20697 0.89948 0.92276 0.90150 0.89390 1.45764 1.14458 1.55466 1.20533 1.17019 0.80596 0.79374 0.85740 1.90772 1.74943 1.40541 1.31800 1.21407 0.96536 1.11063 0.97298 1.23149 0.92734 0.97295 0.91345 1.45860 1.10643 1.42775 1.17575 0.71155 1.77193 1.12345 1.13661 1.07010 1.21269 0.91575 0.96110 0.91128 1.18378 0.92686 0.93959 0.89740 1.22059 0.96453 0.97107 1.00990 1.21435 0.98872 0.98207 0.92796 1.22288 0.99239 1.00232 0.97194 1.22837 0.91750 0.91994 0.99033 1.67961 1.22770 1.21063 0.99264 1.22653 1.01322 0.91737 1.02382 1.22880 1.01912 1.03335 0.92892 1.23257 1.00909 0.97313 1.00548 0.93618 0.77849 0.94881 0.95976 0.77024 0.79212 0.84714 0.84865 0.84915 0.82536 0.88218 0.88769 0.89513 0.90323 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.00 5.43 -59.91 -0.33 -18.32 16 10 C 0.15 2.90 5.80 -4.04 -0.02 2.87 16 11 C 0.17 2.99 2.43 -67.93 -0.17 2.82 16 12 H 0.09 1.74 7.33 -51.93 -0.38 1.35 16 13 N -0.71 -11.60 4.49 -54.92 -0.25 -11.85 16 14 C 0.59 10.20 7.14 -12.57 -0.09 10.11 16 15 O -0.51 -9.77 10.70 5.26 0.06 -9.72 16 16 C -0.25 -3.87 6.31 -102.95 -0.65 -4.52 16 17 C 0.10 1.24 11.50 -16.64 -0.19 1.05 16 18 N -0.46 -4.98 7.20 30.81 0.22 -4.76 16 19 H 0.44 3.02 8.96 -182.85 -1.64 1.38 16 20 N -0.28 -3.87 12.53 34.57 0.43 -3.44 16 21 C 0.17 2.64 7.11 -80.57 -0.57 2.07 16 22 C 0.19 2.95 6.63 -82.96 -0.55 2.40 16 23 C -0.14 -1.76 9.75 -39.10 -0.38 -2.14 16 24 C -0.09 -0.86 10.17 -39.32 -0.40 -1.26 16 25 C -0.17 -1.71 10.11 -39.37 -0.40 -2.11 16 26 C 0.10 1.35 11.17 -17.58 -0.20 1.15 16 27 N -0.40 -6.66 7.07 -9.79 -0.07 -6.72 16 28 C -0.16 -2.35 5.36 -90.62 -0.49 -2.84 16 29 C -0.17 -2.36 10.18 -26.69 -0.27 -2.63 16 30 C -0.18 -2.65 9.74 -26.69 -0.26 -2.91 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.39 10.28 7.33 -40.82 -0.30 9.98 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 5.97 7.56 -40.82 -0.31 5.66 16 36 H 0.19 1.67 7.48 -52.49 -0.39 1.28 16 37 H 0.13 1.43 8.04 -52.48 -0.42 1.01 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.10 1.36 8.11 -51.93 -0.42 0.93 16 42 H 0.09 1.35 8.05 -51.93 -0.42 0.94 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.12 2.02 5.01 -51.93 -0.26 1.76 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -35.07 381.00 -10.41 -45.49 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -7.05 Total: 16.70 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.88 Total: -3.09 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: 0.74 Total: -72.25 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.07 -10.41 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483564685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.242 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds