Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47679 * 85.01170 * 3 2 1 5 5 H 1.48501 * 109.46978 * 205.01483 * 3 2 1 6 6 H 1.48500 * 109.47126 * 325.01111 * 3 2 1 7 7 C 1.39926 * 119.99800 * 179.71303 * 2 1 3 8 8 H 1.08002 * 120.00270 * 197.81548 * 7 2 1 9 9 C 1.41411 * 119.99962 * 17.82288 * 7 2 1 10 10 C 1.40768 * 120.21061 * 23.92697 * 9 7 2 11 11 C 1.37647 * 119.89031 * 179.72348 * 10 9 7 12 12 C 1.38526 * 120.32030 * 0.55328 * 11 10 9 13 13 C 1.39258 * 120.42983 * 359.71654 * 12 11 10 14 14 N 1.39870 * 119.95197 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00017 * 212.14877 * 14 13 12 16 16 O 1.21606 * 120.00201 * 5.41745 * 15 14 13 17 17 C 1.47501 * 120.00098 * 185.41400 * 15 14 13 18 18 C 1.36606 * 125.77261 * 180.02562 * 17 15 14 19 19 N 1.34821 * 106.83505 * 179.97438 * 18 17 15 20 20 C 1.46500 * 126.59618 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.50401 * 204.99630 * 20 19 18 22 22 C 1.53111 * 109.50914 * 84.90957 * 20 19 18 23 23 C 1.53116 * 109.16634 * 182.40449 * 22 20 19 24 24 C 1.53041 * 109.27421 * 57.65869 * 23 22 20 25 25 N 1.46844 * 109.52502 * 300.82170 * 24 23 22 26 26 C 1.46848 * 111.23124 * 61.72022 * 25 24 23 27 27 N 1.40206 * 106.81180 * 359.97438 * 19 18 17 28 28 N 1.28758 * 108.37399 * 359.77011 * 27 19 18 29 29 C 1.38306 * 120.09902 * 0.02562 * 13 12 11 30 30 H 0.97009 * 120.00027 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.05876 * 359.97147 * 10 9 7 32 32 H 1.08000 * 119.83935 * 180.29806 * 11 10 9 33 33 H 1.08003 * 119.78517 * 179.74521 * 12 11 10 34 34 H 0.96993 * 120.00012 * 32.14952 * 14 13 12 35 35 H 1.08001 * 126.58645 * 359.93671 * 18 17 15 36 36 H 1.08995 * 109.52916 * 302.31732 * 22 20 19 37 37 H 1.09005 * 109.51862 * 62.50587 * 22 20 19 38 38 H 1.08999 * 109.50868 * 177.59696 * 23 22 20 39 39 H 1.08999 * 109.50838 * 297.71955 * 23 22 20 40 40 H 1.09004 * 109.46193 * 60.84006 * 24 23 22 41 41 H 1.09004 * 109.46020 * 180.81461 * 24 23 22 42 42 H 1.00892 * 111.00202 * 185.83977 * 25 24 23 43 43 H 1.09004 * 109.49405 * 178.28037 * 26 25 24 44 44 H 1.09005 * 109.43022 * 58.31681 * 26 25 24 45 45 H 1.08004 * 120.15878 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1074 1.3947 5 1 3.5885 1.4120 -0.5920 6 1 1.4964 2.6199 -0.8028 7 6 2.0079 -1.2118 0.0061 8 1 3.0490 -1.2329 0.2923 9 6 1.3516 -2.4089 -0.3628 10 6 0.2139 -2.3669 -1.1906 11 6 -0.4163 -3.5366 -1.5502 12 6 0.0567 -4.7553 -1.0921 13 6 1.1778 -4.8120 -0.2679 14 7 1.6472 -6.0480 0.1885 15 6 2.2351 -6.1408 1.3977 16 8 2.2696 -5.1728 2.1329 17 6 2.8366 -7.4166 1.8294 18 6 3.4591 -7.6420 3.0243 19 7 3.8614 -8.9288 3.0183 20 6 4.5753 -9.6257 4.0911 21 1 5.1409 -10.4576 3.6713 22 6 3.5681 -10.1570 5.1145 23 6 4.3253 -10.8311 6.2620 24 6 5.2905 -9.8236 6.8910 25 7 6.2338 -9.3456 5.8721 26 6 5.5339 -8.6534 4.7824 27 7 3.4641 -9.4722 1.7884 28 7 2.8592 -8.5556 1.1162 29 6 1.8278 -3.6479 0.1000 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1616 -1.4188 -1.5463 32 1 -1.2863 -3.5037 -2.1893 33 1 -0.4469 -5.6674 -1.3763 34 1 1.5497 -6.8383 -0.3653 35 1 3.6021 -6.9267 3.8207 36 1 2.9752 -9.3302 5.5055 37 1 2.9110 -10.8831 4.6357 38 1 3.6155 -11.1738 7.0148 39 1 4.8875 -11.6819 5.8769 40 1 4.7265 -8.9796 7.2882 41 1 5.8417 -10.3045 7.6990 42 1 6.9396 -8.7529 6.2825 43 1 6.2614 -8.2847 4.0592 44 1 4.9693 -7.8144 5.1893 45 1 2.6971 -3.6908 0.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 84.727515 kcal Electronic energy + Delta-G solvation = -28274.928122 eV Core-core repulsion = 24293.982589 eV Total energy + Delta-G solvation = -3980.945533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.37800 -39.55855 -39.10370 -37.05945 -34.77102 -34.38610 -32.98065 -32.52554 -31.06096 -30.16680 -29.78006 -28.03477 -25.28253 -24.74082 -24.61814 -23.55653 -22.07088 -21.39379 -20.79740 -20.22035 -19.73147 -18.32496 -17.65415 -16.93618 -16.14549 -15.87101 -15.56131 -15.33237 -15.07907 -14.98564 -14.65464 -14.59865 -14.43193 -14.28476 -13.93855 -13.76968 -13.32065 -12.98313 -12.84040 -12.43876 -12.10649 -12.04962 -11.70794 -11.65636 -11.58748 -11.49159 -11.32792 -11.14760 -11.05841 -10.66642 -10.47594 -10.44027 -10.16435 -9.69399 -9.55742 -9.34052 -9.19371 -9.16467 -8.81489 -7.40729 -6.83877 -6.68592 -4.28901 1.02728 1.72810 1.74139 2.80590 2.97714 3.11209 3.15986 3.25181 3.45106 3.62065 3.72674 3.86533 3.99125 4.00096 4.14167 4.28322 4.41285 4.50646 4.68591 4.75146 4.79634 4.86993 4.93139 4.98956 5.04890 5.14126 5.27170 5.36919 5.47689 5.63097 5.75322 5.79330 6.11097 6.30721 6.31210 6.46843 6.62843 6.80053 7.05830 7.08566 7.12100 7.29694 7.57564 7.76738 7.86944 8.02713 8.12328 8.24123 8.30751 8.64171 8.75835 8.97935 9.03307 10.25330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.002263 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.275261 B =12371.205275 C =13677.699216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.456 4.456 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.173 4.173 11 C -0.091 4.091 12 C -0.260 4.260 13 C 0.153 3.847 14 N -0.650 5.650 15 C 0.592 3.408 16 O -0.513 6.513 17 C -0.089 4.089 18 C 0.089 3.911 19 N -0.358 5.358 20 C 0.156 3.844 21 H 0.122 0.878 22 C -0.134 4.134 23 C -0.113 4.113 24 C 0.049 3.951 25 N -0.683 5.683 26 C 0.046 3.954 27 N -0.065 5.065 28 N -0.205 5.205 29 C -0.213 4.213 30 H 0.279 0.721 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.406 0.594 35 H 0.201 0.799 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.356 0.644 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -18.082 12.382 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.193 4.193 11 C -0.110 4.110 12 C -0.282 4.282 13 C 0.061 3.939 14 N -0.293 5.293 15 C 0.376 3.624 16 O -0.387 6.387 17 C -0.229 4.229 18 C -0.067 4.067 19 N -0.143 5.143 20 C 0.053 3.947 21 H 0.140 0.860 22 C -0.172 4.172 23 C -0.152 4.152 24 C -0.080 4.080 25 N -0.316 5.316 26 C -0.085 4.085 27 N -0.045 5.045 28 N -0.079 5.079 29 C -0.234 4.234 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.218 0.782 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.176 0.824 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.265 -19.106 11.751 24.268 hybrid contribution 0.021 1.955 0.956 2.176 sum 9.287 -17.151 12.707 23.278 Atomic orbital electron populations 1.69844 1.07560 1.29043 1.35364 1.25898 0.94713 1.01258 0.92313 0.86322 0.80771 0.80771 0.78984 1.19633 1.18447 1.20078 1.19540 0.98129 0.91012 1.39919 0.90472 1.17486 0.91079 0.91617 0.88276 1.21364 0.99605 0.96891 1.01458 1.20459 0.98452 0.92607 0.99510 1.20044 1.00211 0.96998 1.10909 1.17437 0.94860 0.83370 0.98226 1.43207 1.57649 1.10975 1.17432 1.16778 0.78666 0.85022 0.81938 1.90877 1.57858 1.36705 1.53244 1.21622 1.11136 0.95509 0.94608 1.23277 0.96212 0.87343 0.99917 1.50575 1.40055 1.08595 1.15091 1.21550 0.92561 0.95777 0.84771 0.86047 1.22060 0.97661 1.01642 0.95881 1.21565 0.97929 0.98602 0.97092 1.22064 0.94231 0.97821 0.93844 1.60100 1.15508 1.43928 1.12072 1.22233 0.96894 0.94276 0.95092 1.81973 1.15811 1.17589 0.89081 1.74636 1.10628 0.98567 1.24048 1.20966 1.04046 0.91166 1.07226 0.90976 0.86228 0.88994 0.89145 0.75864 0.78201 0.90965 0.90156 0.90269 0.90347 0.94465 0.89847 0.82448 0.89139 0.93432 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.99 10.92 55.55 0.61 -20.38 16 2 C 0.08 1.95 5.14 -17.35 -0.09 1.86 16 3 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.58 9.05 -37.74 -0.34 -12.93 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 9 C 0.12 3.30 5.58 -106.85 -0.60 2.70 16 10 C -0.17 -4.62 8.70 -38.84 -0.34 -4.96 16 11 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 12 C -0.26 -5.95 9.96 -39.10 -0.39 -6.34 16 13 C 0.15 3.60 6.29 -83.79 -0.53 3.07 16 14 N -0.65 -12.82 5.34 -10.86 -0.06 -12.88 16 15 C 0.59 11.47 7.56 -12.48 -0.09 11.38 16 16 O -0.51 -11.58 14.47 5.27 0.08 -11.51 16 17 C -0.09 -1.40 6.99 -83.55 -0.58 -1.98 16 18 C 0.09 1.08 10.40 -16.83 -0.18 0.90 16 19 N -0.36 -3.84 3.55 -54.48 -0.19 -4.04 16 20 C 0.16 1.14 3.39 -67.85 -0.23 0.91 16 21 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 22 C -0.13 -0.83 5.61 -26.61 -0.15 -0.98 16 23 C -0.11 -0.50 6.09 -26.65 -0.16 -0.67 16 24 C 0.05 0.21 6.55 -3.83 -0.03 0.18 16 25 N -0.68 -3.34 6.84 -113.81 -0.78 -4.12 16 26 C 0.05 0.27 5.51 -3.83 -0.02 0.25 16 27 N -0.07 -0.89 13.78 60.35 0.83 -0.06 16 28 N -0.21 -3.16 12.05 32.84 0.40 -2.77 16 29 C -0.21 -5.61 8.40 -38.68 -0.32 -5.93 16 30 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 31 H 0.12 3.25 6.11 -52.49 -0.32 2.93 16 32 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.41 6.91 8.51 -40.82 -0.35 6.56 16 35 H 0.20 1.94 7.32 -52.49 -0.38 1.56 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.36 1.25 8.90 -39.30 -0.35 0.90 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.28 7.18 -51.93 -0.37 -0.10 16 45 H 0.11 2.90 6.31 -52.48 -0.33 2.57 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -32.29 374.88 -8.83 -41.12 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.88 Total: 9.99 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.45 Total: -15.09 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.80 Total: -44.25 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.29 -8.83 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.845 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds