Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48496 * 109.47679 * 85.01170 * 3 2 1 5 5 H 1.48501 * 109.46978 * 205.01483 * 3 2 1 6 6 H 1.48500 * 109.47126 * 325.01111 * 3 2 1 7 7 C 1.39926 * 119.99800 * 179.71303 * 2 1 3 8 8 H 1.08002 * 120.00270 * 197.81548 * 7 2 1 9 9 C 1.41411 * 119.99962 * 17.82288 * 7 2 1 10 10 C 1.40768 * 120.21061 * 23.92697 * 9 7 2 11 11 C 1.37647 * 119.89031 * 179.72348 * 10 9 7 12 12 C 1.38526 * 120.32030 * 0.55328 * 11 10 9 13 13 C 1.39258 * 120.42983 * 359.71654 * 12 11 10 14 14 N 1.39870 * 119.95197 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00017 * 212.14877 * 14 13 12 16 16 O 1.21606 * 120.00201 * 5.41745 * 15 14 13 17 17 C 1.47501 * 120.00098 * 185.41400 * 15 14 13 18 18 C 1.36606 * 125.77261 * 180.02562 * 17 15 14 19 19 N 1.34821 * 106.83505 * 179.97438 * 18 17 15 20 20 C 1.46500 * 126.59618 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.50401 * 204.99630 * 20 19 18 22 22 C 1.53111 * 109.50914 * 84.90957 * 20 19 18 23 23 C 1.53116 * 109.16634 * 182.40449 * 22 20 19 24 24 C 1.53041 * 109.27421 * 57.65869 * 23 22 20 25 25 N 1.46844 * 109.52502 * 300.82170 * 24 23 22 26 26 C 1.46848 * 111.23124 * 61.72022 * 25 24 23 27 27 N 1.40206 * 106.81180 * 359.97438 * 19 18 17 28 28 N 1.28758 * 108.37399 * 359.77011 * 27 19 18 29 29 C 1.38306 * 120.09902 * 0.02562 * 13 12 11 30 30 H 0.97009 * 120.00027 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.05876 * 359.97147 * 10 9 7 32 32 H 1.08000 * 119.83935 * 180.29806 * 11 10 9 33 33 H 1.08003 * 119.78517 * 179.74521 * 12 11 10 34 34 H 0.96993 * 120.00012 * 32.14952 * 14 13 12 35 35 H 1.08001 * 126.58645 * 359.93671 * 18 17 15 36 36 H 1.08995 * 109.52916 * 302.31732 * 22 20 19 37 37 H 1.09005 * 109.51862 * 62.50587 * 22 20 19 38 38 H 1.08999 * 109.50868 * 177.59696 * 23 22 20 39 39 H 1.08999 * 109.50838 * 297.71955 * 23 22 20 40 40 H 1.09004 * 109.46193 * 60.84006 * 24 23 22 41 41 H 1.09004 * 109.46020 * 180.81461 * 24 23 22 42 42 H 1.00892 * 111.00202 * 185.83977 * 25 24 23 43 43 H 1.09004 * 109.49405 * 178.28037 * 26 25 24 44 44 H 1.09005 * 109.43022 * 58.31681 * 26 25 24 45 45 H 1.08004 * 120.15878 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1074 1.3947 5 1 3.5885 1.4120 -0.5920 6 1 1.4964 2.6199 -0.8028 7 6 2.0079 -1.2118 0.0061 8 1 3.0490 -1.2329 0.2923 9 6 1.3516 -2.4089 -0.3628 10 6 0.2139 -2.3669 -1.1906 11 6 -0.4163 -3.5366 -1.5502 12 6 0.0567 -4.7553 -1.0921 13 6 1.1778 -4.8120 -0.2679 14 7 1.6472 -6.0480 0.1885 15 6 2.2351 -6.1408 1.3977 16 8 2.2696 -5.1728 2.1329 17 6 2.8366 -7.4166 1.8294 18 6 3.4591 -7.6420 3.0243 19 7 3.8614 -8.9288 3.0183 20 6 4.5753 -9.6257 4.0911 21 1 5.1409 -10.4576 3.6713 22 6 3.5681 -10.1570 5.1145 23 6 4.3253 -10.8311 6.2620 24 6 5.2905 -9.8236 6.8910 25 7 6.2338 -9.3456 5.8721 26 6 5.5339 -8.6534 4.7824 27 7 3.4641 -9.4722 1.7884 28 7 2.8592 -8.5556 1.1162 29 6 1.8278 -3.6479 0.1000 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1616 -1.4188 -1.5463 32 1 -1.2863 -3.5037 -2.1893 33 1 -0.4469 -5.6674 -1.3763 34 1 1.5497 -6.8383 -0.3653 35 1 3.6021 -6.9267 3.8207 36 1 2.9752 -9.3302 5.5055 37 1 2.9110 -10.8831 4.6357 38 1 3.6155 -11.1738 7.0148 39 1 4.8875 -11.6819 5.8769 40 1 4.7265 -8.9796 7.2882 41 1 5.8417 -10.3045 7.6990 42 1 6.9396 -8.7529 6.2825 43 1 6.2614 -8.2847 4.0592 44 1 4.9693 -7.8144 5.1893 45 1 2.6971 -3.6908 0.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 61.903093 kcal Electronic energy + Delta-G solvation = -28275.917863 eV Core-core repulsion = 24293.982589 eV Total energy + Delta-G solvation = -3981.935274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.44590 -41.09649 -39.75678 -38.90556 -36.26629 -35.52680 -34.79609 -33.00913 -32.22019 -31.75163 -30.94408 -29.74950 -27.25976 -25.67073 -25.22381 -24.63965 -23.07478 -22.82326 -22.60510 -21.27102 -20.78777 -19.68678 -19.19273 -17.92870 -17.36581 -17.20510 -17.03602 -16.61654 -16.44889 -15.94434 -15.84680 -15.71325 -15.49266 -15.13597 -14.94421 -14.89574 -14.62493 -14.45702 -13.98252 -13.75755 -13.55811 -13.44240 -13.17069 -12.79742 -12.65392 -12.61059 -12.52914 -12.24032 -12.20986 -12.01667 -11.98998 -11.70859 -11.57008 -11.34826 -11.24421 -11.02925 -10.68359 -10.45408 -9.57412 -9.39582 -8.72776 -8.61847 -6.34685 -0.00608 0.40820 0.85838 0.97481 1.11826 1.38135 1.49460 1.55157 2.07979 2.18505 2.23468 2.74778 2.97715 3.11209 3.26698 3.46809 3.60469 3.75731 3.79829 3.80457 3.93657 4.07355 4.16186 4.40250 4.45507 4.47319 4.52350 4.60303 4.64150 4.70834 4.80617 4.94750 5.02112 5.07198 5.10587 5.13019 5.20985 5.23855 5.32635 5.33681 5.72554 5.85414 5.86207 6.08630 6.10914 6.32652 6.33273 6.48636 6.68278 6.81637 6.93890 7.01059 7.16847 8.34663 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.002263 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.275261 B =12371.205275 C =13677.699216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.089 3.911 10 C -0.199 4.199 11 C -0.089 4.089 12 C -0.254 4.254 13 C 0.158 3.842 14 N -0.646 5.646 15 C 0.595 3.405 16 O -0.550 6.550 17 C -0.114 4.114 18 C 0.110 3.890 19 N -0.340 5.340 20 C 0.150 3.850 21 H 0.125 0.875 22 C -0.130 4.130 23 C -0.109 4.109 24 C 0.048 3.952 25 N -0.686 5.686 26 C 0.049 3.951 27 N -0.074 5.074 28 N -0.218 5.218 29 C -0.237 4.237 30 H 0.289 0.711 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.421 0.579 35 H 0.226 0.774 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.097 0.903 42 H 0.365 0.635 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -19.274 13.445 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.087 0.913 9 C 0.086 3.914 10 C -0.218 4.218 11 C -0.108 4.108 12 C -0.275 4.275 13 C 0.065 3.935 14 N -0.289 5.289 15 C 0.381 3.619 16 O -0.427 6.427 17 C -0.253 4.253 18 C -0.048 4.048 19 N -0.124 5.124 20 C 0.049 3.951 21 H 0.143 0.857 22 C -0.169 4.169 23 C -0.147 4.147 24 C -0.081 4.081 25 N -0.320 5.320 26 C -0.082 4.082 27 N -0.054 5.054 28 N -0.092 5.092 29 C -0.259 4.259 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.258 0.742 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.186 0.814 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.757 -20.371 12.817 25.970 hybrid contribution -0.111 2.103 0.714 2.223 sum 9.645 -18.269 13.531 24.695 Atomic orbital electron populations 1.69882 1.08936 1.30584 1.35402 1.26764 0.95568 1.04470 0.91162 0.85182 0.79185 0.75869 0.79379 1.18829 1.18380 1.18472 1.19756 0.98148 0.92516 1.42253 0.91333 1.17842 0.92058 0.92402 0.89083 1.21349 1.00270 0.97554 1.02676 1.20816 0.98846 0.92016 0.99077 1.20443 0.99471 0.98107 1.09521 1.17524 0.94500 0.84042 0.97421 1.43130 1.57663 1.10166 1.17977 1.17181 0.77623 0.85855 0.81215 1.90855 1.59141 1.38484 1.54210 1.21162 1.13473 0.94379 0.96287 1.23565 0.94162 0.87947 0.99099 1.50808 1.38769 1.08093 1.14757 1.21926 0.92983 0.96013 0.84131 0.85716 1.22058 0.97374 1.01463 0.96008 1.21566 0.98080 0.98463 0.96594 1.22125 0.94217 0.97816 0.93896 1.60102 1.15746 1.44002 1.12130 1.22176 0.96590 0.94000 0.95434 1.81904 1.15878 1.17441 0.90144 1.74608 1.11306 0.98564 1.24731 1.20940 1.04521 0.92174 1.08261 0.90012 0.87483 0.85850 0.85481 0.74175 0.75808 0.91169 0.90852 0.88992 0.90305 0.94403 0.88483 0.81413 0.89429 0.93000 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.52 10.92 21.82 0.24 -44.28 16 2 C 0.04 1.86 5.14 85.25 0.44 2.30 16 3 Si 0.98 39.77 29.59 68.60 2.03 41.80 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 7 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 8 H 0.07 3.90 7.90 -2.91 -0.02 3.87 16 9 C 0.09 5.17 5.58 -21.31 -0.12 5.05 16 10 C -0.20 -10.86 8.70 22.75 0.20 -10.66 16 11 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 12 C -0.25 -11.31 9.96 22.58 0.22 -11.08 16 13 C 0.16 7.50 6.29 38.12 0.24 7.74 16 14 N -0.65 -25.43 5.34 -306.52 -1.64 -27.06 16 15 C 0.59 23.29 7.56 86.69 0.65 23.95 16 16 O -0.55 -25.55 14.47 -4.05 -0.06 -25.61 16 17 C -0.11 -3.50 6.99 40.81 0.29 -3.21 16 18 C 0.11 2.54 10.40 83.85 0.87 3.41 16 19 N -0.34 -6.79 3.55 -326.28 -1.16 -7.95 16 20 C 0.15 1.92 3.39 45.04 0.15 2.07 16 21 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 22 C -0.13 -1.37 5.61 30.67 0.17 -1.19 16 23 C -0.11 -0.70 6.09 30.65 0.19 -0.52 16 24 C 0.05 0.28 6.55 86.33 0.57 0.85 16 25 N -0.69 -5.15 6.84 -513.97 -3.52 -8.66 16 26 C 0.05 0.49 5.51 86.33 0.48 0.97 16 27 N -0.07 -1.95 13.78 37.02 0.51 -1.44 16 28 N -0.22 -6.58 12.05 -50.00 -0.60 -7.18 16 29 C -0.24 -13.03 8.40 22.86 0.19 -12.84 16 30 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 31 H 0.11 6.02 6.11 -2.91 -0.02 6.01 16 32 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.42 13.96 8.51 -92.71 -0.79 13.17 16 35 H 0.23 3.97 7.32 -2.91 -0.02 3.95 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.04 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.36 1.76 8.90 -89.70 -0.80 0.96 16 43 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.05 0.49 7.18 -2.38 -0.02 0.47 16 45 H 0.09 5.24 6.31 -2.91 -0.02 5.22 16 Total: -1.00 -72.55 374.88 0.25 -72.30 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.53 Total: 33.72 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 4.97 Total: -25.65 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -6.16 Total: -96.57 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.61 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -72.55 0.25 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.207 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds