Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00498 * 2 1 4 4 H 1.48498 * 109.47420 * 240.00159 * 3 2 1 5 5 H 1.48504 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46984 * 119.99546 * 3 2 1 7 7 C 1.37879 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46713 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46982 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99895 * 354.24021 * 11 10 9 13 13 N 1.34778 * 119.99928 * 174.23528 * 11 10 9 14 14 C 1.46497 * 120.00054 * 8.45732 * 13 11 10 15 15 C 1.50704 * 109.46911 * 97.32463 * 14 13 11 16 16 C 1.38314 * 119.88450 * 272.82609 * 15 14 13 17 17 C 1.38035 * 120.11472 * 179.76835 * 16 15 14 18 18 C 1.39299 * 119.87843 * 0.52776 * 17 16 15 19 19 C 1.48466 * 120.11272 * 179.74626 * 18 17 16 20 20 N 1.34045 * 126.67406 * 180.02562 * 19 18 17 21 21 N 1.28986 * 107.27089 * 179.97438 * 20 19 18 22 22 N 1.28738 * 108.94255 * 359.97438 * 21 20 19 23 23 H 0.96998 * 125.33821 * 179.97438 * 22 21 20 24 24 N 1.28872 * 109.31520 * 359.75905 * 22 21 20 25 25 C 1.39298 * 119.76977 * 359.72413 * 18 17 16 26 26 C 1.38024 * 119.87904 * 0.02562 * 25 18 17 27 27 C 1.46497 * 120.00058 * 188.46059 * 13 11 10 28 28 C 1.53007 * 117.49622 * 16.14463 * 27 13 11 29 29 C 1.53003 * 60.00075 * 252.51078 * 28 27 13 30 30 H 0.97003 * 119.99170 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.47395 * 60.00514 * 9 7 2 32 32 H 1.08998 * 109.47309 * 299.99870 * 9 7 2 33 33 H 1.08998 * 109.47341 * 299.99654 * 10 9 7 34 34 H 1.08994 * 109.47516 * 60.00198 * 10 9 7 35 35 H 1.08996 * 109.47495 * 217.32507 * 14 13 11 36 36 H 1.09002 * 109.47166 * 337.33107 * 14 13 11 37 37 H 1.07997 * 119.93947 * 0.02562 * 16 15 14 38 38 H 1.07997 * 120.05266 * 180.25264 * 17 16 15 39 39 H 1.08003 * 120.05896 * 180.02562 * 25 18 17 40 40 H 1.08001 * 119.94008 * 180.02562 * 26 25 18 41 41 H 1.08998 * 115.55238 * 161.85385 * 27 13 11 42 42 H 1.08995 * 117.49932 * 359.97438 * 28 27 13 43 43 H 1.09004 * 117.49789 * 145.02337 * 28 27 13 44 44 H 1.08993 * 117.50464 * 252.51280 * 29 28 27 45 45 H 1.08997 * 117.51578 * 107.47994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 0.0001 12 8 0.2833 -4.9698 0.1059 13 7 2.1602 -6.1316 -0.1170 14 6 3.6239 -6.1447 -0.0586 15 6 4.0678 -6.5024 1.3364 16 6 4.2127 -5.5103 2.2892 17 6 4.6144 -5.8333 3.5697 18 6 4.8844 -7.1597 3.8986 19 6 5.3222 -7.5121 5.2728 20 7 5.6158 -8.7375 5.7299 21 7 5.9521 -8.6136 6.9690 22 7 5.8810 -7.3713 7.2991 23 1 6.0828 -7.0116 8.1770 24 7 5.5040 -6.6800 6.2788 25 6 4.7418 -8.1542 2.9338 26 6 4.3346 -7.8210 1.6577 27 6 1.4233 -7.3840 -0.3028 28 6 -0.0422 -7.2845 -0.7313 29 6 0.3104 -7.7039 0.6973 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 2.8717 -3.6044 -0.8905 34 1 2.8718 -3.6045 0.8894 35 1 4.0091 -6.8821 -0.7628 36 1 4.0069 -5.1581 -0.3199 37 1 4.0073 -4.4818 2.0319 38 1 4.7233 -5.0583 4.3140 39 1 4.9496 -9.1842 3.1837 40 1 4.2234 -8.5914 0.9090 41 1 2.0060 -8.2191 -0.6915 42 1 -0.4581 -6.2872 -0.8744 43 1 -0.4238 -8.0542 -1.4021 44 1 0.1608 -8.7495 0.9663 45 1 0.1269 -6.9827 1.4937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 124.700919 kcal Electronic energy + Delta-G solvation = -28702.550281 eV Core-core repulsion = 24723.338125 eV Total energy + Delta-G solvation = -3979.212156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -45.47980 -41.48914 -40.11549 -37.53092 -36.20710 -35.45097 -35.23621 -34.36660 -32.78168 -31.93415 -31.69572 -27.97471 -27.45769 -25.76442 -24.74602 -24.43612 -23.33291 -23.21006 -22.49202 -22.10665 -20.22221 -19.82952 -18.68060 -18.16318 -18.00327 -17.59829 -17.10172 -16.83710 -16.41569 -16.07161 -15.98032 -15.42003 -15.11437 -14.86678 -14.56532 -14.39890 -14.25760 -14.15294 -14.06655 -13.66738 -13.46709 -13.20502 -13.00821 -12.86806 -12.74650 -12.50665 -12.42050 -12.31404 -12.18421 -11.95402 -11.91995 -11.88620 -11.71162 -11.52025 -11.28421 -11.18966 -10.54294 -10.31369 -9.88520 -9.61028 -9.32421 -8.16459 -6.30234 -0.33383 0.14919 0.47558 1.24788 1.40412 1.42782 1.46948 1.54455 1.66377 2.06345 2.44042 2.66507 2.87939 3.07258 3.14796 3.16772 3.69128 3.85801 3.92158 4.05008 4.09128 4.16602 4.21582 4.22678 4.31437 4.41935 4.45295 4.47946 4.54901 4.69480 4.76156 4.83529 4.88785 4.90159 5.08057 5.15700 5.16512 5.39160 5.44147 5.47009 5.51674 5.57225 5.60359 5.64878 5.85081 5.89544 5.95699 6.19148 6.42822 6.88461 7.09145 7.32589 7.40245 8.95931 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009117 B = 0.003007 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.571674 B = 9309.411934 C =11583.414741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.569 6.569 13 N -0.582 5.582 14 C 0.142 3.858 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.088 4.088 18 C -0.033 4.033 19 C 0.211 3.789 20 N -0.290 5.290 21 N -0.056 5.056 22 N -0.202 5.202 23 H 0.494 0.506 24 N -0.303 5.303 25 C -0.079 4.079 26 C -0.094 4.094 27 C 0.087 3.913 28 C -0.208 4.208 29 C -0.188 4.188 30 H 0.262 0.738 31 H -0.019 1.019 32 H -0.021 1.021 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.175 0.825 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.072 -20.722 7.135 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.009 3.991 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.448 6.448 13 N -0.313 5.313 14 C 0.020 3.980 15 C -0.086 4.086 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.037 4.037 19 C -0.068 4.068 20 N -0.162 5.162 21 N -0.051 5.051 22 N -0.053 5.053 23 H 0.353 0.647 24 N -0.155 5.155 25 C -0.099 4.099 26 C -0.112 4.112 27 C -0.017 4.017 28 C -0.246 4.246 29 C -0.227 4.227 30 H 0.070 0.930 31 H -0.001 1.001 32 H -0.003 1.003 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.192 0.808 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.520 -21.029 7.683 27.242 hybrid contribution -0.447 1.884 0.743 2.074 sum 15.073 -19.145 8.426 25.782 Atomic orbital electron populations 1.70179 1.08319 1.27763 1.51546 1.26110 0.95657 1.03848 0.94711 0.85425 0.78101 0.77519 0.79536 1.18536 1.21555 1.18716 1.21678 0.93994 0.91520 1.50659 0.90494 1.18642 0.93593 0.92422 0.94449 1.21758 0.99407 0.90486 1.04331 1.21384 0.87672 0.86510 0.74392 1.90559 1.16763 1.87767 1.49733 1.47493 1.07067 1.05135 1.71565 1.20882 0.77626 1.06055 0.93397 1.20534 0.97514 0.94024 0.96555 1.21263 0.99344 1.00334 0.92991 1.21177 0.97563 0.95064 0.97011 1.17407 1.04728 0.94675 0.86887 1.23904 1.01164 0.85762 0.95982 1.76039 1.16705 1.22020 1.01450 1.78829 1.15474 1.02288 1.08480 1.47785 1.40727 1.03103 1.13684 0.64749 1.74952 1.19580 1.24978 0.95968 1.21322 0.96983 0.99278 0.92319 1.21262 0.97676 0.95765 0.96471 1.22032 0.88418 0.88171 1.03083 1.23617 0.98642 1.04021 0.98311 1.23132 1.04895 1.01788 0.92886 0.92956 1.00107 1.00257 0.87724 0.88282 0.85171 0.87879 0.85559 0.85229 0.83613 0.81791 0.80829 0.89268 0.86824 0.86160 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.29 21.45 0.28 -59.22 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.05 2.57 4.28 29.85 0.13 2.69 16 10 C -0.12 -4.72 4.04 29.85 0.12 -4.60 16 11 C 0.51 19.26 7.44 87.66 0.65 19.91 16 12 O -0.57 -27.01 11.73 -3.04 -0.04 -27.04 16 13 N -0.58 -15.08 2.83 -802.12 -2.27 -17.34 16 14 C 0.14 2.43 5.60 85.63 0.48 2.91 16 15 C -0.08 -1.54 5.44 -19.83 -0.11 -1.65 16 16 C -0.12 -2.71 9.69 22.24 0.22 -2.50 16 17 C -0.09 -1.98 9.70 22.48 0.22 -1.77 16 18 C -0.03 -0.72 5.88 -20.04 -0.12 -0.84 16 19 C 0.21 4.71 7.94 137.38 1.09 5.80 16 20 N -0.29 -6.48 12.23 -52.18 -0.64 -7.12 16 21 N -0.06 -1.04 13.47 37.02 0.50 -0.54 16 22 N -0.20 -2.79 7.90 37.02 0.29 -2.50 16 23 H 0.49 1.87 8.96 -347.53 -3.12 -1.25 16 24 N -0.30 -6.01 12.08 -52.12 -0.63 -6.64 16 25 C -0.08 -1.38 9.70 22.47 0.22 -1.16 16 26 C -0.09 -1.37 9.67 22.24 0.22 -1.15 16 27 C 0.09 1.93 6.62 45.00 0.30 2.22 16 28 C -0.21 -5.85 9.62 30.60 0.29 -5.55 16 29 C -0.19 -4.96 9.87 30.60 0.30 -4.66 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 32 H -0.02 -1.33 8.04 -2.39 -0.02 -1.35 16 33 H 0.10 3.54 7.49 -2.39 -0.02 3.53 16 34 H 0.10 3.47 5.99 -2.39 -0.01 3.46 16 35 H 0.13 1.19 8.04 -2.39 -0.02 1.17 16 36 H 0.10 1.78 6.06 -2.39 -0.01 1.77 16 37 H 0.13 3.02 5.93 -2.91 -0.02 3.01 16 38 H 0.13 2.89 7.88 -2.91 -0.02 2.87 16 39 H 0.15 2.18 7.89 -2.91 -0.02 2.15 16 40 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 3.46 5.29 -2.87 -0.02 3.45 16 43 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 44 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.05 1.94 7.54 -2.39 -0.02 1.92 16 Total: -1.00 -83.88 380.24 2.16 -81.72 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -2.07 Total: 13.02 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.70 Total: -20.31 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -2.46 Total: -93.37 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -83.88 2.16 -81.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.419 kcal (2) G-P(sol) polarization free energy of solvation -83.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds