Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48501 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47023 * 300.00079 * 3 2 1 6 6 H 1.48502 * 109.47069 * 59.99776 * 3 2 1 7 7 C 1.37874 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47034 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00031 * 353.25046 * 11 10 9 13 13 N 1.34778 * 119.99966 * 173.25365 * 11 10 9 14 14 C 1.39945 * 119.99734 * 184.84887 * 13 11 10 15 15 C 1.38964 * 120.01211 * 171.03670 * 14 13 11 16 16 C 1.38160 * 120.16727 * 179.97438 * 15 14 13 17 17 C 1.38100 * 120.19473 * 0.02562 * 16 15 14 18 18 C 1.39320 * 120.01584 * 0.02562 * 17 16 15 19 19 C 1.48473 * 120.07576 * 179.97438 * 18 17 16 20 20 N 1.34051 * 126.67091 * 179.68445 * 19 18 17 21 21 N 1.28981 * 107.26844 * 179.87361 * 20 19 18 22 22 N 1.28726 * 108.94259 * 0.40153 * 21 20 19 23 23 H 0.97001 * 125.34390 * 179.77221 * 22 21 20 24 24 N 1.28868 * 109.31849 * 359.74509 * 22 21 20 25 25 C 1.38657 * 120.01365 * 350.75599 * 14 13 11 26 26 C 1.46497 * 120.00071 * 4.56736 * 13 11 10 27 27 C 1.53776 * 113.61297 * 139.16683 * 26 13 11 28 28 C 1.53785 * 87.08058 * 220.01886 * 27 26 13 29 29 C 1.53775 * 87.07991 * 25.43298 * 28 27 26 30 30 H 0.96998 * 120.00483 * 0.02562 * 1 2 3 31 31 H 1.08991 * 109.46670 * 60.00036 * 9 7 2 32 32 H 1.09002 * 109.46920 * 300.00289 * 9 7 2 33 33 H 1.09004 * 109.47084 * 59.99926 * 10 9 7 34 34 H 1.08996 * 109.47265 * 300.00551 * 10 9 7 35 35 H 1.08003 * 119.91552 * 359.97438 * 15 14 13 36 36 H 1.08002 * 119.90630 * 179.97438 * 16 15 14 37 37 H 1.07989 * 119.99192 * 179.97438 * 17 16 15 38 38 H 1.07996 * 120.09310 * 0.02562 * 25 14 13 39 39 H 1.08997 * 112.84955 * 270.47161 * 26 13 11 40 40 H 1.08998 * 113.61717 * 334.56551 * 27 26 13 41 41 H 1.09000 * 113.61582 * 105.46948 * 27 26 13 42 42 H 1.09001 * 113.61065 * 270.88188 * 28 27 26 43 43 H 1.09000 * 113.61545 * 139.98192 * 28 27 26 44 44 H 1.09006 * 113.61351 * 220.02448 * 29 28 27 45 45 H 1.08995 * 113.69619 * 89.12777 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0020 12 8 0.2854 -4.9708 0.1260 13 7 2.1588 -6.1303 -0.1352 14 6 1.4523 -7.3341 -0.2367 15 6 2.1215 -8.5073 -0.5636 16 6 1.4273 -9.6976 -0.6641 17 6 0.0648 -9.7280 -0.4409 18 6 -0.6142 -8.5562 -0.1138 19 6 -2.0791 -8.5873 0.1258 20 7 -2.8592 -7.5471 0.4520 21 7 -4.0639 -7.9933 0.5672 22 7 -4.0643 -9.2597 0.3364 23 1 -4.8453 -9.8345 0.3623 24 7 -2.8646 -9.6440 0.0650 25 6 0.0854 -7.3576 -0.0055 26 6 3.6229 -6.1338 -0.1844 27 6 4.2630 -7.2868 0.6066 28 6 5.3278 -6.2765 1.0654 29 6 4.2756 -5.1800 0.8301 30 1 -0.4851 0.8400 -0.0004 31 1 0.6242 -2.5574 -0.8880 32 1 0.6247 -2.5563 0.8920 33 1 2.8727 -3.6039 0.8909 34 1 2.8714 -3.6046 -0.8890 35 1 3.1870 -8.4886 -0.7394 36 1 1.9516 -10.6068 -0.9188 37 1 -0.4746 -10.6601 -0.5208 38 1 -0.4359 -6.4477 0.2526 39 1 4.0127 -6.0278 -1.1967 40 1 3.6374 -7.6603 1.4173 41 1 4.6591 -8.0823 -0.0246 42 1 6.1847 -6.2106 0.3950 43 1 5.6147 -6.3891 2.1109 44 1 4.6820 -4.2746 0.3791 45 1 3.6529 -4.9763 1.7011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = 136.533259 kcal Electronic energy + Delta-G solvation = -29290.532456 eV Core-core repulsion = 25311.833389 eV Total energy + Delta-G solvation = -3978.699067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.50654 -42.28324 -39.56575 -39.35903 -35.88768 -35.53222 -35.27049 -34.35839 -33.24252 -31.64528 -30.81586 -28.02480 -26.85080 -26.13852 -25.71323 -25.13824 -24.27381 -23.11516 -22.14970 -20.89813 -20.51068 -20.09698 -18.77485 -18.43940 -18.18977 -17.92407 -16.95603 -16.73931 -16.47124 -16.32770 -15.84056 -15.53318 -15.23430 -14.96223 -14.79281 -14.41803 -14.11386 -13.90503 -13.87607 -13.45926 -13.40095 -13.26835 -13.09023 -12.83520 -12.66763 -12.61521 -12.45468 -12.41903 -12.27752 -12.15742 -12.03743 -11.77902 -11.57766 -11.56528 -11.25609 -10.99268 -10.88226 -10.56554 -10.23012 -9.70198 -8.87370 -8.16815 -6.31227 -0.31159 0.13664 0.40430 1.24664 1.38978 1.42475 1.44247 1.57346 1.67856 1.82036 2.43341 2.65314 2.90443 3.16406 3.16565 3.39905 3.61313 3.68961 3.92772 4.00812 4.07593 4.16115 4.25573 4.36196 4.38756 4.42746 4.51261 4.54569 4.59917 4.78098 4.85679 4.90613 5.00070 5.05868 5.09452 5.18908 5.19571 5.32039 5.43911 5.48958 5.52558 5.58112 5.60183 5.61313 5.62953 5.85008 6.10438 6.17375 6.36168 6.87409 7.08766 7.16536 7.39188 8.96159 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.003397 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.458102 B = 8239.841661 C =10934.196795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.249 1.249 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.116 4.116 11 C 0.503 3.497 12 O -0.552 6.552 13 N -0.545 5.545 14 C 0.141 3.859 15 C -0.133 4.133 16 C -0.086 4.086 17 C -0.106 4.106 18 C -0.021 4.021 19 C 0.210 3.790 20 N -0.307 5.307 21 N -0.063 5.063 22 N -0.197 5.197 23 H 0.495 0.505 24 N -0.284 5.284 25 C -0.166 4.166 26 C 0.092 3.908 27 C -0.132 4.132 28 C -0.125 4.125 29 C -0.160 4.160 30 H 0.262 0.738 31 H -0.022 1.022 32 H -0.019 1.019 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.087 -26.796 -0.837 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.172 1.172 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.155 4.155 11 C 0.296 3.704 12 O -0.431 6.431 13 N -0.267 5.267 14 C 0.046 3.954 15 C -0.154 4.154 16 C -0.105 4.105 17 C -0.127 4.127 18 C -0.025 4.025 19 C -0.070 4.070 20 N -0.179 5.179 21 N -0.058 5.058 22 N -0.049 5.049 23 H 0.355 0.645 24 N -0.137 5.137 25 C -0.188 4.188 26 C -0.009 4.009 27 C -0.169 4.169 28 C -0.162 4.162 29 C -0.197 4.197 30 H 0.070 0.930 31 H -0.004 1.004 32 H 0.000 1.000 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.749 -26.325 -0.604 27.449 hybrid contribution -1.067 0.986 0.030 1.453 sum 6.682 -25.340 -0.574 26.212 Atomic orbital electron populations 1.70204 1.08424 1.27680 1.51575 1.26159 0.95672 1.04018 0.94690 0.85274 0.79489 0.78051 0.77436 1.17191 1.20754 1.20806 1.21694 0.94022 0.91261 1.50547 0.90276 1.18730 0.93698 0.92692 0.94519 1.22014 0.99235 0.89056 1.05203 1.21760 0.87601 0.86730 0.74324 1.90418 1.16841 1.86711 1.49095 1.45885 1.08373 1.03918 1.68572 1.18069 0.90636 0.87008 0.99687 1.21705 1.02351 0.90148 1.01179 1.21317 0.92710 0.98694 0.97733 1.21363 0.95569 0.96435 0.99377 1.17342 0.84800 0.95247 1.05065 1.23964 0.97300 0.84725 1.00999 1.76291 0.96279 1.27059 1.18235 1.78902 1.16180 0.95101 1.15651 1.47798 1.09048 1.06892 1.41113 0.64541 1.74803 0.91814 1.25526 1.21587 1.22551 0.94840 1.00071 1.01375 1.23463 0.75115 1.01060 1.01277 1.23370 0.97287 0.96559 0.99682 1.22767 0.96471 0.93816 1.03173 1.23554 0.98572 0.99088 0.98519 0.92960 1.00378 1.00026 0.86512 0.87873 0.81119 0.80486 0.83318 0.83039 0.85622 0.90368 0.86945 0.87244 0.90227 0.89263 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.86 13.29 21.45 0.28 -60.57 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 9 C 0.04 2.35 4.29 29.85 0.13 2.48 16 10 C -0.12 -4.79 3.56 29.85 0.11 -4.68 16 11 C 0.50 20.89 7.31 87.66 0.64 21.54 16 12 O -0.55 -28.55 12.40 -3.06 -0.04 -28.59 16 13 N -0.55 -16.64 3.01 -606.28 -1.82 -18.46 16 14 C 0.14 4.18 6.17 38.12 0.24 4.41 16 15 C -0.13 -2.53 8.27 22.43 0.19 -2.34 16 16 C -0.09 -1.36 10.03 22.22 0.22 -1.14 16 17 C -0.11 -2.26 9.70 22.50 0.22 -2.04 16 18 C -0.02 -0.64 5.87 -20.06 -0.12 -0.75 16 19 C 0.21 6.73 7.94 137.38 1.09 7.82 16 20 N -0.31 -11.49 12.23 -52.17 -0.64 -12.13 16 21 N -0.06 -1.88 13.47 37.02 0.50 -1.38 16 22 N -0.20 -3.94 7.90 37.02 0.29 -3.65 16 23 H 0.50 3.97 8.96 -347.55 -3.12 0.86 16 24 N -0.28 -6.93 12.08 -52.12 -0.63 -7.56 16 25 C -0.17 -6.09 8.69 22.60 0.20 -5.90 16 26 C 0.09 1.80 3.55 45.52 0.16 1.96 16 27 C -0.13 -1.69 5.33 31.12 0.17 -1.52 16 28 C -0.12 -1.50 8.08 31.12 0.25 -1.25 16 29 C -0.16 -3.15 4.97 31.12 0.15 -3.00 16 30 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 31 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 32 H -0.02 -1.22 8.03 -2.39 -0.02 -1.24 16 33 H 0.12 4.28 5.14 -2.38 -0.01 4.27 16 34 H 0.10 3.73 7.88 -2.39 -0.02 3.71 16 35 H 0.17 2.00 4.60 -2.91 -0.01 1.99 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.15 2.47 7.88 -2.92 -0.02 2.45 16 38 H 0.15 7.10 4.41 -57.89 -0.26 6.85 16 39 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 1.27 7.73 -2.39 -0.02 1.25 16 41 H 0.11 0.72 6.81 -2.39 -0.02 0.70 16 42 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 1.74 7.46 -2.38 -0.02 1.72 16 45 H 0.07 1.74 6.97 -2.39 -0.02 1.72 16 Total: -1.00 -89.48 366.12 2.01 -87.48 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -2.30 Total: 13.11 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.33 Total: -14.97 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -2.02 Total: -103.74 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.04 Total: -28.59 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -89.48 2.01 -87.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.010 kcal (2) G-P(sol) polarization free energy of solvation -89.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds