Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48499 * 109.46941 * 270.00557 * 3 2 1 5 5 H 1.48503 * 109.46829 * 30.00715 * 3 2 1 6 6 H 1.48496 * 109.47016 * 150.00351 * 3 2 1 7 7 C 1.37878 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99983 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.49645 * 59.93485 * 9 7 2 11 11 C 1.53037 * 109.49617 * 179.97438 * 9 7 2 12 12 C 1.53042 * 109.53666 * 181.31608 * 11 9 7 13 13 C 1.53192 * 109.31484 * 298.64125 * 12 11 9 14 14 N 1.46917 * 108.77773 * 54.63179 * 13 12 11 15 15 C 1.34783 * 120.63149 * 126.37018 * 14 13 12 16 16 O 1.21587 * 119.99726 * 175.57230 * 15 14 13 17 17 N 1.34768 * 119.99834 * 355.57314 * 15 14 13 18 18 C 1.40022 * 120.00251 * 187.67524 * 17 15 14 19 19 C 1.38892 * 120.00032 * 32.41692 * 18 17 15 20 20 C 1.38032 * 119.99306 * 179.67703 * 19 18 17 21 21 C 1.38852 * 120.00282 * 0.61841 * 20 19 18 22 22 N 1.40287 * 119.99217 * 179.69976 * 21 20 19 23 23 C 1.34699 * 126.84328 * 359.97438 * 22 21 20 24 24 N 1.30871 * 108.03618 * 179.97438 * 23 22 21 25 25 C 1.33240 * 109.84368 * 0.02562 * 24 23 22 26 26 N 1.30772 * 108.99458 * 359.74598 * 25 24 23 27 27 C 1.38845 * 120.00977 * 359.67527 * 21 20 19 28 28 C 1.38036 * 120.00265 * 0.02562 * 27 21 20 29 29 C 1.46931 * 118.73906 * 306.64480 * 14 13 12 30 30 H 0.97000 * 120.00255 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.45952 * 61.30271 * 11 9 7 32 32 H 1.09002 * 109.46249 * 301.33884 * 11 9 7 33 33 H 1.09002 * 109.49960 * 178.68471 * 12 11 9 34 34 H 1.08999 * 109.49685 * 58.58967 * 12 11 9 35 35 H 1.09008 * 109.58460 * 294.84270 * 13 12 11 36 36 H 1.09000 * 109.70575 * 174.49579 * 13 12 11 37 37 H 0.97005 * 120.00123 * 7.67454 * 17 15 14 38 38 H 1.07998 * 120.00254 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.99172 * 180.31748 * 20 19 18 40 40 H 1.07997 * 125.97866 * 359.96481 * 23 22 21 41 41 H 1.08000 * 125.50045 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.99942 * 180.02562 * 27 21 20 43 43 H 1.08003 * 119.99928 * 180.02562 * 28 27 21 44 44 H 1.09002 * 109.58342 * 173.14532 * 29 14 13 45 45 H 1.08998 * 109.58455 * 293.57140 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8757 -0.6795 0.8882 11 6 4.0223 -2.6367 -0.0010 12 6 5.5524 -2.6379 0.0315 13 6 6.0864 -1.9359 -1.2210 14 7 5.4857 -0.5978 -1.3056 15 6 6.2622 0.4971 -1.4276 16 8 5.7520 1.5905 -1.5776 17 7 7.6040 0.3798 -1.3835 18 6 8.4063 1.5269 -1.3483 19 6 7.9511 2.6734 -0.7101 20 6 8.7449 3.8020 -0.6697 21 6 9.9930 3.7951 -1.2782 22 7 10.7969 4.9442 -1.2425 23 6 10.4973 6.1218 -0.6611 24 7 11.5059 6.9344 -0.8486 25 6 12.4618 6.3166 -1.5412 26 7 12.0766 5.0943 -1.8015 27 6 10.4456 2.6510 -1.9215 28 6 9.6547 1.5202 -1.9567 29 6 4.0226 -0.4753 -1.2484 30 1 -0.4850 0.8400 0.0004 31 1 3.6780 -3.1439 -0.9022 32 1 3.6400 -3.1572 0.8771 33 1 5.9150 -3.6655 0.0552 34 1 5.8978 -2.1092 0.9200 35 1 5.8183 -2.5134 -2.1058 36 1 7.1709 -1.8463 -1.1580 37 1 8.0141 -0.4992 -1.3761 38 1 6.9782 2.6804 -0.2413 39 1 8.3930 4.6919 -0.1690 40 1 9.5846 6.3545 -0.1328 41 1 13.4046 6.7533 -1.8359 42 1 11.4166 2.6457 -2.3944 43 1 10.0070 0.6302 -2.4568 44 1 3.7457 0.5779 -1.2009 45 1 3.5829 -0.9312 -2.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649016554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 112.809573 kcal Electronic energy + Delta-G solvation = -28993.831321 eV Core-core repulsion = 25014.103518 eV Total energy + Delta-G solvation = -3979.727803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58949 -40.87174 -39.25953 -37.36917 -35.42018 -33.86744 -32.99317 -32.04653 -31.94175 -31.08186 -30.64192 -28.71184 -25.37712 -25.19750 -23.93792 -23.73409 -22.20779 -21.74815 -21.58391 -20.23293 -19.18798 -18.71241 -18.40934 -17.37444 -16.74661 -16.13240 -16.07645 -15.56535 -15.40989 -14.85242 -14.61948 -14.46451 -14.21329 -14.08785 -13.98676 -13.67156 -13.49698 -13.14718 -13.10372 -12.89486 -12.69372 -12.57203 -12.31895 -11.66278 -11.47378 -11.27014 -11.15357 -10.74137 -10.52859 -10.44834 -10.21688 -10.20427 -10.09404 -9.93787 -9.83231 -9.36942 -9.31915 -9.19563 -8.68112 -8.32900 -7.96163 -6.16893 -4.19094 0.41643 1.02368 1.67773 1.88344 2.56924 2.59684 3.12395 3.32189 3.39853 3.48271 3.57323 3.79989 3.92997 4.10288 4.35420 4.48842 4.56125 4.68408 4.86527 4.94718 5.05775 5.14579 5.16237 5.23345 5.29559 5.49827 5.65233 5.69660 5.70907 5.83738 5.92702 5.98416 6.04069 6.06344 6.15304 6.16490 6.27821 6.41227 6.47339 6.50935 6.59982 6.68609 6.79397 6.95105 7.09876 7.33957 7.63993 7.66928 7.91035 8.40060 8.58038 8.86175 9.43969 10.95019 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002652 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.198112 B =10557.005203 C =11878.923141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.112 3.888 14 N -0.616 5.616 15 C 0.699 3.301 16 O -0.572 6.572 17 N -0.691 5.691 18 C 0.184 3.816 19 C -0.098 4.098 20 C -0.105 4.105 21 C 0.113 3.887 22 N -0.319 5.319 23 C 0.258 3.742 24 N -0.541 5.541 25 C 0.201 3.799 26 N -0.318 5.318 27 C -0.085 4.085 28 C -0.134 4.134 29 C 0.118 3.882 30 H 0.266 0.734 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.222 0.778 41 H 0.221 0.779 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.191 2.351 -2.353 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.096 0.904 9 C -0.016 4.016 10 H 0.048 0.952 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.011 4.011 14 N -0.352 5.352 15 C 0.401 3.599 16 O -0.449 6.449 17 N -0.341 5.341 18 C 0.087 3.913 19 C -0.120 4.120 20 C -0.126 4.126 21 C 0.020 3.980 22 N -0.103 5.103 23 C -0.037 4.037 24 N -0.268 5.268 25 C -0.101 4.101 26 N -0.144 5.144 27 C -0.106 4.106 28 C -0.155 4.155 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.239 0.761 41 H 0.238 0.762 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.099 0.901 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.989 2.994 -2.739 23.344 hybrid contribution 0.370 0.464 -0.007 0.594 sum 23.359 3.458 -2.746 23.773 Atomic orbital electron populations 1.69882 1.06281 1.27230 1.49706 1.25059 0.94781 0.99130 0.94052 0.86976 0.79556 0.83480 0.79013 1.19771 1.22248 1.18986 1.20931 0.88048 0.94672 1.51877 0.90391 1.19437 0.96919 0.92237 0.92970 0.95168 1.21437 0.91776 0.98868 1.01730 1.21992 0.98833 0.99568 0.97073 1.21648 0.96072 0.83857 0.99548 1.47773 1.08269 1.04354 1.74771 1.15940 0.80491 0.85161 0.78273 1.90938 1.72533 1.25296 1.56136 1.42990 1.05281 1.08107 1.77717 1.17639 0.90628 0.87614 0.95464 1.21109 1.00820 0.91445 0.98577 1.20677 0.91611 0.99721 1.00637 1.17497 0.90921 0.85283 1.04277 1.47711 1.12681 1.10474 1.39438 1.26206 0.99924 0.81722 0.95814 1.70630 1.01950 1.32719 1.21464 1.26135 0.99889 0.88511 0.95593 1.78105 0.93738 1.20477 1.22090 1.20615 1.00547 0.90547 0.98871 1.20742 0.94314 0.99217 1.01260 1.22547 0.73851 1.02695 1.01209 0.92428 0.92380 0.92050 0.91454 0.91921 0.91055 0.91738 0.75470 0.83192 0.84751 0.76147 0.76237 0.84195 0.84614 0.90146 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.88 22.37 24.32 -169.99 -4.13 18.23 16 4 H -0.27 -7.00 6.92 56.52 0.39 -6.61 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -6.63 6.53 56.52 0.37 -6.26 16 7 C -0.52 -13.78 9.15 -34.44 -0.31 -14.09 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.09 1.83 -91.87 -0.17 -0.08 16 10 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 11 C -0.10 -1.74 5.11 -26.69 -0.14 -1.87 16 12 C -0.14 -1.76 6.08 -26.61 -0.16 -1.93 16 13 C 0.11 1.36 6.43 -3.72 -0.02 1.33 16 14 N -0.62 -10.40 2.98 -178.76 -0.53 -10.93 16 15 C 0.70 11.97 8.00 -86.92 -0.70 11.27 16 16 O -0.57 -12.07 13.51 5.29 0.07 -11.99 16 17 N -0.69 -8.56 5.25 -14.20 -0.07 -8.64 16 18 C 0.18 2.22 6.29 -83.64 -0.53 1.70 16 19 C -0.10 -1.28 8.65 -39.42 -0.34 -1.62 16 20 C -0.11 -1.12 9.47 -39.43 -0.37 -1.50 16 21 C 0.11 1.24 6.70 -83.53 -0.56 0.68 16 22 N -0.32 -3.53 3.82 -11.78 -0.05 -3.58 16 23 C 0.26 2.49 11.98 -90.38 -1.08 1.41 16 24 N -0.54 -5.86 11.19 -15.75 -0.18 -6.04 16 25 C 0.20 1.96 13.03 -91.76 -1.20 0.76 16 26 N -0.32 -3.63 12.05 29.30 0.35 -3.27 16 27 C -0.09 -0.87 9.68 -39.43 -0.38 -1.25 16 28 C -0.13 -1.29 9.95 -39.42 -0.39 -1.69 16 29 C 0.12 2.48 5.08 -3.93 -0.02 2.46 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.55 5.58 -51.93 -0.29 0.26 16 37 H 0.41 3.63 6.29 -40.82 -0.26 3.37 16 38 H 0.15 2.30 6.42 -52.49 -0.34 1.97 16 39 H 0.13 1.07 6.80 -52.48 -0.36 0.72 16 40 H 0.22 1.26 7.10 -52.49 -0.37 0.89 16 41 H 0.22 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.14 1.33 7.73 -52.48 -0.41 0.93 16 43 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 44 H 0.08 1.93 2.35 -51.93 -0.12 1.81 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -35.04 361.22 -10.28 -45.32 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.49 Total: 3.86 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -6.47 Total: -2.46 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.30 Total: -58.40 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.04 -10.28 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649016554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.131 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds