Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47247 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.47025 * 149.99746 * 3 2 1 7 7 C 1.37881 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00190 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99756 * 86.43174 * 10 9 7 12 12 C 1.50697 * 109.46829 * 269.99826 * 11 10 9 13 13 C 1.38224 * 119.61861 * 94.98625 * 12 11 10 14 14 C 1.38627 * 119.16446 * 179.79200 * 13 12 11 15 15 C 1.38681 * 118.41674 * 0.46352 * 14 13 12 16 16 C 1.38174 * 119.16430 * 359.51021 * 15 14 13 17 17 N 1.31862 * 119.61999 * 274.99858 * 12 11 10 18 18 C 1.34771 * 120.00160 * 266.43149 * 10 9 7 19 19 O 1.21688 * 120.00345 * 175.15791 * 18 10 9 20 20 C 1.46779 * 119.99732 * 355.16117 * 18 10 9 21 21 C 1.41627 * 126.55303 * 44.80223 * 20 18 10 22 22 N 1.30456 * 108.23075 * 179.97438 * 21 20 18 23 23 N 1.39496 * 109.13332 * 359.97438 * 22 21 20 24 24 C 1.35122 * 108.57007 * 359.75457 * 23 22 21 25 25 N 1.37899 * 125.24625 * 179.61246 * 24 23 22 26 26 C 1.47081 * 110.66647 * 18.66668 * 25 24 23 27 27 C 1.53218 * 109.54729 * 309.16489 * 26 25 24 28 28 C 1.46866 * 127.33714 * 180.02562 * 23 22 21 29 29 H 0.96997 * 119.99438 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47234 * 59.99818 * 9 7 2 31 31 H 1.09003 * 109.46740 * 299.99650 * 9 7 2 32 32 H 1.09003 * 109.46476 * 150.00341 * 11 10 9 33 33 H 1.08993 * 109.47384 * 30.00281 * 11 10 9 34 34 H 1.08005 * 120.41932 * 359.97438 * 13 12 11 35 35 H 1.07993 * 120.79421 * 180.23197 * 14 13 12 36 36 H 1.08000 * 120.41538 * 179.78467 * 15 14 13 37 37 H 1.08003 * 119.62170 * 180.24945 * 16 15 14 38 38 H 1.08000 * 125.88787 * 359.97438 * 21 20 18 39 39 H 1.00896 * 111.21923 * 254.78480 * 25 24 23 40 40 H 1.09002 * 109.45402 * 189.14498 * 26 25 24 41 41 H 1.08997 * 109.46102 * 69.19127 * 26 25 24 42 42 H 1.09000 * 109.58293 * 307.50511 * 27 26 25 43 43 H 1.09006 * 109.67773 * 187.18382 * 27 26 25 44 44 H 1.09006 * 109.79940 * 314.74868 * 28 23 22 45 45 H 1.09005 * 109.80032 * 75.54847 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.1700 -3.2920 -1.2655 12 6 2.8914 -4.0104 -1.6118 13 6 1.9754 -3.4075 -2.4533 14 6 0.8043 -4.0786 -2.7691 15 6 0.5928 -5.3328 -2.2164 16 6 1.5541 -5.8723 -1.3834 17 7 2.6590 -5.2068 -1.1084 18 6 4.2925 -3.1868 1.1658 19 8 4.6134 -4.3606 1.1732 20 6 4.2240 -2.4368 2.4257 21 6 3.1913 -1.5547 2.8272 22 7 3.4914 -1.0850 4.0067 23 7 4.7079 -1.6287 4.4195 24 6 5.1562 -2.4620 3.4548 25 7 6.3344 -3.1767 3.5051 26 6 6.8238 -3.2742 4.8886 27 6 6.8566 -1.8787 5.5204 28 6 5.4155 -1.3734 5.6808 29 1 -0.4849 0.8401 0.0004 30 1 3.8746 -0.6802 0.8910 31 1 3.8752 -0.6806 -0.8889 32 1 4.9786 -4.0164 -1.1671 33 1 4.4129 -2.5813 -2.0553 34 1 2.1711 -2.4271 -2.8621 35 1 0.0723 -3.6338 -3.4269 36 1 -0.3100 -5.8827 -2.4378 37 1 1.3988 -6.8502 -0.9521 38 1 2.3076 -1.3126 2.2555 39 1 7.0338 -2.7707 2.9018 40 1 7.8286 -3.6968 4.8894 41 1 6.1590 -3.9180 5.4645 42 1 7.4127 -1.1986 4.8752 43 1 7.3367 -1.9294 6.4977 44 1 5.4206 -0.3038 5.8914 45 1 4.9242 -1.9073 6.4944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649290876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 101.745448 kcal Electronic energy + Delta-G solvation = -30505.009950 eV Core-core repulsion = 26524.802370 eV Total energy + Delta-G solvation = -3980.207580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35321 -39.64913 -38.34592 -37.07903 -34.95337 -33.45922 -32.65985 -31.81013 -31.25547 -30.32064 -28.74330 -28.06016 -25.92848 -25.28562 -23.07347 -22.87187 -22.30423 -21.71522 -21.06435 -19.57768 -18.64456 -17.07620 -16.84930 -16.25310 -15.99749 -15.90718 -15.53667 -15.51835 -15.13655 -14.99003 -14.47866 -14.17648 -14.12986 -13.61903 -13.42838 -13.22583 -12.82320 -12.72119 -12.68720 -12.48439 -12.22256 -12.12515 -11.65621 -11.55809 -11.45283 -11.42801 -11.15616 -10.92339 -10.59651 -10.56568 -10.21089 -9.72047 -9.59313 -9.22038 -8.93732 -8.78624 -8.71900 -8.55987 -8.32845 -7.75732 -7.55835 -6.19059 -4.19423 1.70282 1.96106 2.02251 2.59156 2.99877 3.19548 3.29297 3.31591 3.76692 3.95032 4.04171 4.20433 4.29390 4.41588 4.62005 4.72231 4.91098 4.93194 5.10588 5.18426 5.20597 5.34018 5.35495 5.38573 5.55046 5.62621 5.64651 5.72855 5.79443 5.92026 6.04997 6.09675 6.17336 6.30852 6.37918 6.54043 6.56122 6.74254 6.78152 6.81644 6.88423 7.24203 7.31984 7.45159 7.50147 7.54760 8.16931 8.25636 8.51908 8.70458 8.91399 9.22755 9.41457 10.92242 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.004953 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.790419 B = 5651.358633 C = 7569.559641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.080 3.920 3 Si 0.863 3.137 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.204 3.796 10 N -0.588 5.588 11 C 0.177 3.823 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.085 3.915 17 N -0.458 5.458 18 C 0.599 3.401 19 O -0.535 6.535 20 C -0.270 4.270 21 C 0.109 3.891 22 N -0.309 5.309 23 N -0.399 5.399 24 C 0.298 3.702 25 N -0.586 5.586 26 C 0.047 3.953 27 C -0.174 4.174 28 C 0.133 3.867 29 H 0.266 0.734 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.219 0.781 39 H 0.365 0.635 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -3.282 3.709 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.690 3.310 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.100 0.900 9 C 0.083 3.917 10 N -0.319 5.319 11 C 0.052 3.948 12 C -0.018 4.018 13 C -0.147 4.147 14 C -0.106 4.106 15 C -0.200 4.200 16 C -0.072 4.072 17 N -0.167 5.167 18 C 0.386 3.614 19 O -0.412 6.412 20 C -0.287 4.287 21 C -0.078 4.078 22 N -0.128 5.128 23 N -0.186 5.186 24 C 0.073 3.927 25 N -0.219 5.219 26 C -0.082 4.082 27 C -0.214 4.214 28 C 0.012 3.988 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.235 0.765 39 H 0.193 0.807 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.652 -3.959 5.340 13.415 hybrid contribution -0.176 1.865 -0.926 2.090 sum 11.477 -2.094 4.414 12.473 Atomic orbital electron populations 1.69897 1.06110 1.27077 1.49104 1.24853 0.94617 0.98538 0.94367 0.87038 0.80798 0.84471 0.78702 1.20069 1.20981 1.18777 1.21422 0.89131 0.94923 1.51805 0.89974 1.19940 0.95848 0.78326 0.97631 1.47683 1.65001 1.15078 1.04149 1.20054 0.93247 0.94915 0.86537 1.21583 0.97169 0.90688 0.92365 1.21919 0.94311 0.99988 0.98454 1.21455 0.96707 0.94169 0.98280 1.22007 1.00529 0.97174 1.00299 1.22595 0.89908 0.99339 0.95388 1.67556 1.20978 1.08065 1.20133 1.16955 0.76623 0.85550 0.82223 1.90765 1.48557 1.15040 1.86795 1.19593 0.98962 1.11839 0.98275 1.25170 0.99654 0.91600 0.91363 1.77077 0.97612 1.22273 1.15862 1.49003 1.19137 1.34174 1.16261 1.19308 0.93448 0.89895 0.90022 1.57245 1.04115 1.50516 1.10020 1.22273 1.02390 0.95743 0.87791 1.22681 0.95724 0.98933 1.04099 1.21817 0.90689 1.02842 0.83497 0.92421 0.94140 0.95761 0.89371 0.89708 0.84850 0.85556 0.85825 0.83798 0.76541 0.80720 0.88667 0.89524 0.90552 0.88298 0.88862 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 13.96 55.43 0.77 -24.00 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.86 19.63 27.47 -169.99 -4.67 14.96 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -13.37 7.03 -34.44 -0.24 -13.61 16 8 H 0.08 2.36 7.53 -52.49 -0.40 1.97 16 9 C 0.20 4.47 3.81 -5.19 -0.02 4.45 16 10 N -0.59 -12.36 2.44 -177.94 -0.43 -12.79 16 11 C 0.18 3.31 5.72 -5.19 -0.03 3.28 16 12 C 0.12 2.40 6.00 -82.59 -0.50 1.90 16 13 C -0.13 -2.34 8.91 -39.44 -0.35 -2.69 16 14 C -0.08 -1.36 10.18 -39.27 -0.40 -1.76 16 15 C -0.18 -2.90 10.11 -39.44 -0.40 -3.30 16 16 C 0.09 1.51 11.18 -17.55 -0.20 1.31 16 17 N -0.46 -9.46 10.27 -9.47 -0.10 -9.56 16 18 C 0.60 13.30 7.53 -12.81 -0.10 13.20 16 19 O -0.53 -12.91 16.73 5.20 0.09 -12.83 16 20 C -0.27 -5.69 5.15 -104.92 -0.54 -6.23 16 21 C 0.11 2.39 9.69 -16.84 -0.16 2.23 16 22 N -0.31 -6.29 12.52 30.94 0.39 -5.90 16 23 N -0.40 -6.69 4.03 -59.57 -0.24 -6.93 16 24 C 0.30 5.27 7.11 -153.80 -1.09 4.18 16 25 N -0.59 -8.27 6.82 -59.61 -0.41 -8.68 16 26 C 0.05 0.45 6.59 -3.61 -0.02 0.43 16 27 C -0.17 -1.38 6.17 -26.33 -0.16 -1.54 16 28 C 0.13 1.48 7.40 -3.55 -0.03 1.45 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.92 4.55 -51.93 -0.24 0.68 16 31 H 0.02 0.51 7.37 -51.93 -0.38 0.12 16 32 H 0.09 1.64 7.49 -51.93 -0.39 1.25 16 33 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 34 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.22 5.22 5.46 -52.49 -0.29 4.94 16 39 H 0.36 4.47 8.84 -39.29 -0.35 4.12 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -34.11 371.48 -9.18 -43.29 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.84 Total: 11.55 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -4.34 Total: 5.29 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.02 Total: -67.87 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.11 -9.18 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649290876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.031 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds