Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47247 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.47025 * 149.99746 * 3 2 1 7 7 C 1.37881 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00190 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99756 * 86.43174 * 10 9 7 12 12 C 1.50697 * 109.46829 * 269.99826 * 11 10 9 13 13 C 1.38224 * 119.61861 * 94.98625 * 12 11 10 14 14 C 1.38627 * 119.16446 * 179.79200 * 13 12 11 15 15 C 1.38681 * 118.41674 * 0.46352 * 14 13 12 16 16 C 1.38174 * 119.16430 * 359.51021 * 15 14 13 17 17 N 1.31862 * 119.61999 * 274.99858 * 12 11 10 18 18 C 1.34771 * 120.00160 * 266.43149 * 10 9 7 19 19 O 1.21688 * 120.00345 * 175.15791 * 18 10 9 20 20 C 1.46779 * 119.99732 * 355.16117 * 18 10 9 21 21 C 1.41627 * 126.55303 * 44.80223 * 20 18 10 22 22 N 1.30456 * 108.23075 * 179.97438 * 21 20 18 23 23 N 1.39496 * 109.13332 * 359.97438 * 22 21 20 24 24 C 1.35122 * 108.57007 * 359.75457 * 23 22 21 25 25 N 1.37899 * 125.24625 * 179.61246 * 24 23 22 26 26 C 1.47081 * 110.66647 * 18.66668 * 25 24 23 27 27 C 1.53218 * 109.54729 * 309.16489 * 26 25 24 28 28 C 1.46866 * 127.33714 * 180.02562 * 23 22 21 29 29 H 0.96997 * 119.99438 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47234 * 59.99818 * 9 7 2 31 31 H 1.09003 * 109.46740 * 299.99650 * 9 7 2 32 32 H 1.09003 * 109.46476 * 150.00341 * 11 10 9 33 33 H 1.08993 * 109.47384 * 30.00281 * 11 10 9 34 34 H 1.08005 * 120.41932 * 359.97438 * 13 12 11 35 35 H 1.07993 * 120.79421 * 180.23197 * 14 13 12 36 36 H 1.08000 * 120.41538 * 179.78467 * 15 14 13 37 37 H 1.08003 * 119.62170 * 180.24945 * 16 15 14 38 38 H 1.08000 * 125.88787 * 359.97438 * 21 20 18 39 39 H 1.00896 * 111.21923 * 254.78480 * 25 24 23 40 40 H 1.09002 * 109.45402 * 189.14498 * 26 25 24 41 41 H 1.08997 * 109.46102 * 69.19127 * 26 25 24 42 42 H 1.09000 * 109.58293 * 307.50511 * 27 26 25 43 43 H 1.09006 * 109.67773 * 187.18382 * 27 26 25 44 44 H 1.09006 * 109.79940 * 314.74868 * 28 23 22 45 45 H 1.09005 * 109.80032 * 75.54847 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.1700 -3.2920 -1.2655 12 6 2.8914 -4.0104 -1.6118 13 6 1.9754 -3.4075 -2.4533 14 6 0.8043 -4.0786 -2.7691 15 6 0.5928 -5.3328 -2.2164 16 6 1.5541 -5.8723 -1.3834 17 7 2.6590 -5.2068 -1.1084 18 6 4.2925 -3.1868 1.1658 19 8 4.6134 -4.3606 1.1732 20 6 4.2240 -2.4368 2.4257 21 6 3.1913 -1.5547 2.8272 22 7 3.4914 -1.0850 4.0067 23 7 4.7079 -1.6287 4.4195 24 6 5.1562 -2.4620 3.4548 25 7 6.3344 -3.1767 3.5051 26 6 6.8238 -3.2742 4.8886 27 6 6.8566 -1.8787 5.5204 28 6 5.4155 -1.3734 5.6808 29 1 -0.4849 0.8401 0.0004 30 1 3.8746 -0.6802 0.8910 31 1 3.8752 -0.6806 -0.8889 32 1 4.9786 -4.0164 -1.1671 33 1 4.4129 -2.5813 -2.0553 34 1 2.1711 -2.4271 -2.8621 35 1 0.0723 -3.6338 -3.4269 36 1 -0.3100 -5.8827 -2.4378 37 1 1.3988 -6.8502 -0.9521 38 1 2.3076 -1.3126 2.2555 39 1 7.0338 -2.7707 2.9018 40 1 7.8286 -3.6968 4.8894 41 1 6.1590 -3.9180 5.4645 42 1 7.4127 -1.1986 4.8752 43 1 7.3367 -1.9294 6.4977 44 1 5.4206 -0.3038 5.8914 45 1 4.9242 -1.9073 6.4944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649290876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = 77.706926 kcal Electronic energy + Delta-G solvation = -30506.052338 eV Core-core repulsion = 26524.802370 eV Total energy + Delta-G solvation = -3981.249968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71649 -41.09642 -39.91354 -38.24479 -36.67317 -34.69265 -34.44261 -33.26060 -32.72171 -31.52846 -30.15485 -29.87084 -27.41998 -26.29232 -24.60424 -24.24826 -23.83733 -23.10591 -22.53323 -20.71371 -20.11807 -19.01427 -18.32964 -17.70507 -17.31942 -17.20238 -17.06248 -16.75528 -16.44771 -16.40840 -15.97758 -15.62976 -15.22586 -15.12476 -14.74514 -14.62757 -14.39632 -14.15275 -14.09389 -13.92320 -13.72197 -13.47188 -13.25714 -13.11363 -12.65231 -12.59549 -12.39633 -12.24870 -12.22443 -12.00519 -11.95598 -11.61368 -10.96745 -10.74920 -10.66693 -10.57254 -10.23741 -9.90953 -9.77366 -9.33332 -9.08548 -8.21161 -6.23943 0.30282 0.55764 0.63344 1.32410 1.38865 1.39442 1.44158 1.50532 2.33158 2.38175 2.45089 2.74699 3.10698 3.16146 3.35605 3.55545 3.69754 3.87624 3.97394 4.03560 4.10353 4.19221 4.25960 4.36990 4.38371 4.40510 4.51552 4.58940 4.63534 4.65221 4.72752 4.78400 4.82802 4.89962 4.95817 5.01120 5.01285 5.32876 5.36050 5.42690 5.53000 5.58762 5.85552 5.90917 5.95877 6.25853 6.31408 6.66673 6.73271 6.84468 7.28068 7.36365 7.57277 8.93687 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.004953 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.790419 B = 5651.358633 C = 7569.559641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.034 3.966 3 Si 0.922 3.078 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.512 4.512 8 H 0.036 0.964 9 C 0.214 3.786 10 N -0.587 5.587 11 C 0.172 3.828 12 C 0.102 3.898 13 C -0.140 4.140 14 C -0.089 4.089 15 C -0.172 4.172 16 C 0.069 3.931 17 N -0.495 5.495 18 C 0.597 3.403 19 O -0.563 6.563 20 C -0.313 4.313 21 C 0.094 3.906 22 N -0.328 5.328 23 N -0.388 5.388 24 C 0.321 3.679 25 N -0.598 5.598 26 C 0.042 3.958 27 C -0.158 4.158 28 C 0.114 3.886 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.187 0.813 39 H 0.377 0.623 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.142 0.858 44 H 0.107 0.893 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.051 -2.798 4.701 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.175 1.175 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.092 3.908 10 N -0.318 5.318 11 C 0.049 3.951 12 C -0.037 4.037 13 C -0.160 4.160 14 C -0.115 4.115 15 C -0.192 4.192 16 C -0.088 4.088 17 N -0.204 5.204 18 C 0.386 3.614 19 O -0.443 6.443 20 C -0.330 4.330 21 C -0.093 4.093 22 N -0.149 5.149 23 N -0.175 5.175 24 C 0.093 3.907 25 N -0.233 5.233 26 C -0.086 4.086 27 C -0.198 4.198 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.204 0.796 39 H 0.208 0.792 40 H 0.149 0.851 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.160 0.840 44 H 0.125 0.875 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.184 -3.465 6.332 15.915 hybrid contribution -0.936 1.555 -1.095 2.120 sum 13.248 -1.911 5.236 14.373 Atomic orbital electron populations 1.70036 1.07902 1.27791 1.51511 1.25494 0.95104 1.01763 0.94201 0.86088 0.79756 0.80098 0.79377 1.18454 1.21816 1.17544 1.21303 0.90555 0.92911 1.50286 0.94616 1.19760 0.93586 0.79198 0.98237 1.47701 1.64415 1.14789 1.04846 1.20268 0.93066 0.95419 0.86349 1.21696 0.97872 0.90963 0.93172 1.22047 0.95000 1.00279 0.98718 1.21849 0.96578 0.94590 0.98453 1.22384 1.01169 0.96858 0.98747 1.23100 0.89677 1.00248 0.95761 1.67527 1.22717 1.08929 1.21273 1.17191 0.76000 0.85289 0.82872 1.90723 1.50224 1.16033 1.87284 1.19616 1.00550 1.13497 0.99327 1.24601 0.99420 0.93026 0.92219 1.76939 0.99705 1.22978 1.15264 1.49405 1.17868 1.32572 1.17642 1.19396 0.93870 0.88643 0.88752 1.57242 1.03441 1.49441 1.13189 1.22516 1.03826 0.97116 0.85096 1.22668 0.93428 0.97271 1.06399 1.22458 0.92329 1.04324 0.81352 0.92584 0.94261 0.93757 0.89683 0.86896 0.84639 0.83245 0.82137 0.81567 0.79640 0.79248 0.85128 0.90409 0.89930 0.84018 0.87505 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.96 21.45 0.30 -53.84 16 2 C 0.03 1.80 5.46 84.65 0.46 2.27 16 3 Si 0.92 40.67 27.47 68.60 1.88 42.56 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.51 -26.53 7.03 25.60 0.18 -26.35 16 8 H 0.04 2.17 7.53 -2.91 -0.02 2.15 16 9 C 0.21 9.47 3.81 85.63 0.33 9.80 16 10 N -0.59 -25.26 2.44 -835.11 -2.04 -27.30 16 11 C 0.17 6.59 5.72 85.63 0.49 7.08 16 12 C 0.10 4.14 6.00 42.55 0.26 4.39 16 13 C -0.14 -5.29 8.91 22.36 0.20 -5.09 16 14 C -0.09 -2.99 10.18 22.47 0.23 -2.76 16 15 C -0.17 -5.39 10.11 22.36 0.23 -5.17 16 16 C 0.07 2.47 11.18 84.67 0.95 3.42 16 17 N -0.49 -21.03 10.27 -183.89 -1.89 -22.92 16 18 C 0.60 27.33 7.53 86.48 0.65 27.98 16 19 O -0.56 -28.01 16.73 -4.31 -0.07 -28.08 16 20 C -0.31 -13.48 5.15 -20.06 -0.10 -13.58 16 21 C 0.09 4.26 9.69 85.73 0.83 5.09 16 22 N -0.33 -13.51 12.52 -56.04 -0.70 -14.21 16 23 N -0.39 -12.51 4.03 -342.37 -1.38 -13.89 16 24 C 0.32 11.10 7.11 132.54 0.94 12.05 16 25 N -0.60 -15.69 6.82 -342.50 -2.33 -18.02 16 26 C 0.04 0.65 6.59 86.34 0.57 1.22 16 27 C -0.16 -1.77 6.17 30.85 0.19 -1.58 16 28 C 0.11 2.19 7.40 86.50 0.64 2.83 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.04 1.79 4.55 -2.39 -0.01 1.78 16 31 H 0.04 1.79 7.37 -2.39 -0.02 1.78 16 32 H 0.08 3.26 7.49 -2.39 -0.02 3.24 16 33 H 0.11 3.53 7.83 -2.39 -0.02 3.51 16 34 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.17 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.19 9.57 5.46 -2.91 -0.02 9.55 16 39 H 0.38 8.39 8.84 -89.70 -0.79 7.59 16 40 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.14 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -79.13 371.48 0.99 -78.14 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.19 Total: 35.98 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 7.04 Total: 21.58 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -8.04 Total: -150.18 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.07 Total: -28.08 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.56 kcal Total: -79.13 0.99 -78.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649290876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.847 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds