Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99629 * 2 1 4 4 H 1.48500 * 109.46592 * 239.99921 * 3 2 1 5 5 H 1.48495 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46938 * 120.00502 * 3 2 1 7 7 C 1.38814 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99507 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47430 * 35.00334 * 10 9 7 12 12 C 1.53001 * 109.47093 * 155.00003 * 10 9 7 13 13 N 1.46503 * 109.47163 * 305.00016 * 12 10 9 14 14 C 1.34771 * 119.99925 * 179.97438 * 13 12 10 15 15 O 1.21631 * 120.00242 * 354.96260 * 14 13 12 16 16 C 1.47150 * 119.99734 * 174.96910 * 14 13 12 17 17 C 1.37067 * 127.21402 * 354.08395 * 16 14 13 18 18 N 1.33312 * 106.37764 * 179.88463 * 17 16 14 19 19 N 1.28503 * 109.49209 * 0.39736 * 18 17 16 20 20 N 1.28713 * 110.67311 * 359.74798 * 19 18 17 21 21 C 1.40090 * 126.05905 * 180.02562 * 20 19 18 22 22 C 1.38863 * 120.07082 * 135.54230 * 21 20 19 23 23 C 1.38114 * 119.92540 * 179.69688 * 22 21 20 24 24 C 1.38280 * 120.07058 * 0.57614 * 23 22 21 25 25 C 1.38280 * 120.13937 * 359.72406 * 24 23 22 26 26 C 1.38104 * 120.07157 * 359.97069 * 25 24 23 27 27 C 1.52999 * 109.47416 * 274.99876 * 10 9 7 28 28 C 1.53002 * 117.49999 * 128.74666 * 27 10 9 29 29 C 1.53009 * 117.49672 * 60.08846 * 27 10 9 30 30 H 0.97000 * 120.00391 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00165 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46999 * 65.00031 * 12 10 9 33 33 H 1.08997 * 109.47422 * 184.99916 * 12 10 9 34 34 H 0.96997 * 119.99773 * 359.97438 * 13 12 10 35 35 H 1.08005 * 126.81229 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.03116 * 359.97419 * 22 21 20 37 37 H 1.08004 * 119.95974 * 180.29340 * 23 22 21 38 38 H 1.08002 * 119.92583 * 179.73970 * 24 23 22 39 39 H 1.08002 * 119.96419 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.03565 * 180.02562 * 26 25 24 41 41 H 1.08998 * 115.55207 * 274.42561 * 27 10 9 42 42 H 1.08997 * 117.49730 * 0.02562 * 28 27 10 43 43 H 1.08998 * 117.49749 * 145.02505 * 28 27 10 44 44 H 1.08996 * 117.49534 * 214.98490 * 29 27 10 45 45 H 1.08997 * 117.49648 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9688 -3.5505 0.5889 12 6 1.1810 -4.7521 0.6091 13 7 0.7343 -4.3355 1.9407 14 6 -0.0555 -5.1473 2.6712 15 8 -0.4724 -6.1839 2.1905 16 6 -0.4135 -4.7795 4.0503 17 6 0.0580 -3.7147 4.7732 18 7 -0.5395 -3.7744 5.9634 19 7 -1.3192 -4.7951 6.0011 20 7 -1.2850 -5.4345 4.8845 21 6 -2.0093 -6.5931 4.5752 22 6 -2.6507 -6.7060 3.3488 23 6 -3.3587 -7.8522 3.0445 24 6 -3.4392 -8.8816 3.9643 25 6 -2.8067 -8.7695 5.1889 26 6 -2.0919 -7.6287 5.4967 27 6 2.4220 -4.0356 -1.4375 28 6 3.8823 -4.3891 -1.7267 29 6 3.3029 -3.0621 -2.2233 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 0.3134 -4.9201 -0.0291 33 1 1.7559 -5.6745 0.6908 34 1 1.0070 -3.4754 2.2966 35 1 0.7703 -2.9729 4.4431 36 1 -2.5922 -5.9003 2.6320 37 1 -3.8538 -7.9425 2.0889 38 1 -3.9970 -9.7751 3.7255 39 1 -2.8711 -9.5755 5.9050 40 1 -1.5978 -7.5420 6.4532 41 1 1.6541 -4.5774 -1.9897 42 1 4.5836 -4.3522 -0.8932 43 1 4.0751 -5.1632 -2.4694 44 1 3.1147 -2.9638 -3.2924 45 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661172106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 140.662401 kcal Electronic energy + Delta-G solvation = -29115.361621 eV Core-core repulsion = 25136.841607 eV Total energy + Delta-G solvation = -3978.520014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.54164 -39.57028 -39.30470 -37.61756 -35.09318 -34.53585 -33.52440 -31.93711 -31.29245 -30.68085 -30.08853 -28.14262 -24.99361 -23.96211 -23.70430 -23.01144 -22.24268 -21.77429 -21.37875 -20.42364 -19.73352 -18.81767 -17.49979 -16.95606 -16.76977 -16.59655 -15.81264 -15.30932 -15.15643 -14.98908 -14.67829 -14.62430 -14.27836 -13.97894 -13.79204 -13.67714 -13.27922 -13.17267 -13.04669 -12.28154 -12.14822 -12.02312 -11.55773 -11.47198 -11.34860 -11.25018 -10.94287 -10.90265 -10.80938 -10.77712 -10.21359 -10.15656 -9.99420 -9.61921 -9.59309 -9.38695 -9.21504 -9.04915 -8.92064 -8.86022 -7.13470 -5.88185 -3.18718 0.39497 1.09165 1.27899 1.94271 2.26156 3.12480 3.19253 3.36592 3.41911 3.42117 3.43649 4.31262 4.35038 4.48039 4.53468 4.59931 4.63902 4.79746 4.87490 5.06040 5.08938 5.10855 5.26243 5.37319 5.42281 5.44098 5.53276 5.62780 5.70107 5.78307 5.86562 5.89014 5.96537 5.99966 6.07603 6.09390 6.18809 6.25151 6.33692 6.42643 6.50015 6.64477 6.70677 6.71520 6.89861 7.57393 7.58561 8.14130 8.25631 8.28253 9.40671 9.92920 10.28816 11.33188 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003065 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.418721 B = 9132.982980 C =10473.766853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.690 5.690 14 C 0.587 3.413 15 O -0.538 6.538 16 C -0.062 4.062 17 C 0.012 3.988 18 N -0.266 5.266 19 N -0.057 5.057 20 N -0.212 5.212 21 C 0.105 3.895 22 C -0.053 4.053 23 C -0.110 4.110 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.090 4.090 27 C -0.160 4.160 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.206 0.794 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 -16.701 5.916 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.416 6.416 16 C -0.194 4.194 17 C -0.147 4.147 18 N -0.130 5.130 19 N -0.036 5.036 20 N -0.003 5.003 21 C 0.016 3.984 22 C -0.073 4.073 23 C -0.128 4.128 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.110 4.110 27 C -0.182 4.182 28 C -0.234 4.234 29 C -0.192 4.192 30 H 0.067 0.933 31 H 0.220 0.780 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.222 0.778 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.144 -17.163 7.011 18.805 hybrid contribution 0.774 1.447 -1.138 1.997 sum -2.370 -15.716 5.874 16.945 Atomic orbital electron populations 1.69637 1.05077 1.25969 1.56784 1.24721 0.95420 0.97605 1.02549 0.86345 0.78621 0.83763 0.77892 1.21269 1.21749 1.21174 1.19089 0.90800 0.83745 1.43665 0.91119 1.42452 1.05800 0.99382 1.88168 1.20060 0.94318 0.86010 0.91409 0.92480 1.21722 0.98916 0.97892 0.81791 1.45679 1.49428 1.21241 1.17823 1.16623 0.79597 0.84173 0.82582 1.90832 1.54020 1.24943 1.71760 1.22149 1.01510 0.98901 0.96800 1.24056 1.02060 0.98111 0.90513 1.74913 1.07004 1.11421 1.19621 1.78361 1.17886 1.02751 1.04636 1.44702 1.27396 1.18626 1.09533 1.17521 0.99156 0.84645 0.97101 1.21101 0.92944 0.99445 0.93840 1.21037 0.99114 0.92692 0.99991 1.21354 0.98201 0.98792 0.93501 1.20992 0.97916 0.97236 0.97506 1.20994 0.99226 0.91941 0.98845 1.23013 0.92224 1.03227 0.99688 1.22969 0.97187 0.99861 1.03384 1.22784 1.03237 0.94057 0.99125 0.93334 0.78039 0.91191 0.91140 0.74819 0.77755 0.84673 0.84714 0.85169 0.84828 0.84900 0.89112 0.89500 0.90077 0.90203 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.85 13.06 55.49 0.72 -25.13 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.24 -5.84 8.63 -15.06 -0.13 -5.97 16 8 H 0.07 1.67 6.91 -52.49 -0.36 1.30 16 9 N -0.72 -15.23 4.54 -53.43 -0.24 -15.47 16 10 C 0.19 3.24 2.70 -67.93 -0.18 3.05 16 11 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.81 5.22 -4.04 -0.02 1.79 16 13 N -0.69 -10.28 5.37 -61.47 -0.33 -10.61 16 14 C 0.59 9.11 7.44 -12.65 -0.09 9.02 16 15 O -0.54 -9.09 13.15 5.25 0.07 -9.02 16 16 C -0.06 -0.93 6.79 -82.23 -0.56 -1.49 16 17 C 0.01 0.17 11.54 -17.33 -0.20 -0.03 16 18 N -0.27 -4.30 12.34 30.49 0.38 -3.93 16 19 N -0.06 -0.92 12.94 60.35 0.78 -0.14 16 20 N -0.21 -3.22 3.48 -7.21 -0.03 -3.24 16 21 C 0.11 1.44 5.90 -83.62 -0.49 0.95 16 22 C -0.05 -0.69 7.43 -39.40 -0.29 -0.98 16 23 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16 24 C -0.10 -0.85 10.04 -39.55 -0.40 -1.24 16 25 C -0.12 -1.03 10.04 -39.62 -0.40 -1.43 16 26 C -0.09 -1.01 9.82 -39.40 -0.39 -1.40 16 27 C -0.16 -2.56 5.36 -90.61 -0.49 -3.04 16 28 C -0.20 -2.75 10.18 -26.69 -0.27 -3.02 16 29 C -0.15 -2.58 9.78 -26.69 -0.26 -2.84 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 9.04 7.80 -40.82 -0.32 8.72 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.41 6.20 7.22 -40.82 -0.29 5.90 16 35 H 0.21 2.41 7.60 -52.48 -0.40 2.01 16 36 H 0.14 1.94 6.70 -52.49 -0.35 1.58 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 42 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.11 1.98 6.23 -51.93 -0.32 1.66 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -29.55 381.75 -8.40 -37.94 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -5.81 Total: 16.35 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -4.67 Total: -8.41 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 1.28 Total: -58.52 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.55 -8.40 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661172106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.605 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds