Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99883 * 2 1 4 4 H 1.48502 * 109.47214 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00328 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00219 * 3 2 1 7 7 C 1.38812 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99699 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00002 * 185.00078 * 9 7 2 11 11 H 1.08998 * 109.46888 * 329.22042 * 10 9 7 12 12 C 1.53003 * 109.46893 * 209.22273 * 10 9 7 13 13 N 1.46498 * 109.47076 * 53.79134 * 12 10 9 14 14 C 1.34782 * 120.00154 * 175.22857 * 13 12 10 15 15 O 1.21630 * 119.99304 * 5.30266 * 14 13 12 16 16 C 1.47141 * 120.00508 * 185.30194 * 14 13 12 17 17 C 1.37081 * 127.21175 * 353.85887 * 16 14 13 18 18 N 1.33307 * 106.37479 * 180.21562 * 17 16 14 19 19 N 1.28504 * 109.49887 * 359.77724 * 18 17 16 20 20 N 1.28724 * 110.67027 * 359.97438 * 19 18 17 21 21 C 1.40083 * 126.05780 * 179.97438 * 20 19 18 22 22 C 1.38867 * 120.06670 * 135.75720 * 21 20 19 23 23 C 1.38108 * 119.92909 * 180.02562 * 22 21 20 24 24 C 1.38286 * 120.06832 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.13875 * 0.02562 * 24 23 22 26 26 C 1.38106 * 120.07044 * 359.97438 * 25 24 23 27 27 C 1.52992 * 109.47507 * 89.22103 * 10 9 7 28 28 C 1.53001 * 117.50052 * 8.74703 * 27 10 9 29 29 C 1.53003 * 117.49927 * 300.09003 * 27 10 9 30 30 H 0.96992 * 119.99982 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99803 * 4.99287 * 9 7 2 32 32 H 1.09005 * 109.47044 * 293.79015 * 12 10 9 33 33 H 1.09002 * 109.46986 * 173.78624 * 12 10 9 34 34 H 0.96997 * 120.00031 * 355.22096 * 13 12 10 35 35 H 1.08003 * 126.81183 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.03427 * 0.04252 * 22 21 20 37 37 H 1.07994 * 119.96327 * 180.27688 * 23 22 21 38 38 H 1.08002 * 119.92717 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.96201 * 179.97438 * 25 24 23 40 40 H 1.08009 * 120.03792 * 179.97438 * 26 25 24 41 41 H 1.09001 * 115.55419 * 154.41880 * 27 10 9 42 42 H 1.09005 * 117.49560 * 359.97438 * 28 27 10 43 43 H 1.09001 * 117.50402 * 145.01959 * 28 27 10 44 44 H 1.09005 * 117.49754 * 214.98096 * 29 27 10 45 45 H 1.09002 * 117.49937 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4660 -0.1122 11 1 3.5293 -3.2652 0.3458 12 6 5.4577 -2.3404 0.6052 13 7 5.2372 -1.8861 1.9804 14 6 6.2756 -1.7956 2.8349 15 8 7.4079 -1.9978 2.4394 16 6 6.0396 -1.4523 4.2461 17 6 4.8515 -1.0834 4.8220 18 7 5.1108 -0.8644 6.1111 19 7 6.3567 -1.0797 6.3407 20 7 6.9621 -1.4377 5.2626 21 6 8.3226 -1.7505 5.1459 22 6 8.7204 -2.8652 4.4195 23 6 10.0625 -3.1712 4.3068 24 6 11.0097 -2.3686 4.9160 25 6 10.6167 -1.2580 5.6400 26 6 9.2762 -0.9466 5.7564 27 6 4.3496 -2.7898 -1.5885 28 6 4.0003 -1.7092 -2.6139 29 6 3.1189 -2.9538 -2.4827 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3653 0.0720 32 1 6.0835 -1.6188 0.0800 33 1 5.9543 -3.3106 0.6184 34 1 4.3440 -1.6503 2.2760 35 1 3.8959 -0.9855 4.3284 36 1 7.9811 -3.4919 3.9429 37 1 10.3727 -4.0353 3.7383 38 1 12.0585 -2.6103 4.8267 39 1 11.3588 -0.6334 6.1150 40 1 8.9698 -0.0793 6.3224 41 1 5.2120 -3.4226 -1.7983 42 1 3.6008 -0.7678 -2.2366 43 1 4.6326 -1.6313 -3.4983 44 1 3.1718 -3.6943 -3.2808 45 1 2.1400 -2.8315 -2.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661172107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 147.562539 kcal Electronic energy + Delta-G solvation = -29310.548430 eV Core-core repulsion = 25332.327628 eV Total energy + Delta-G solvation = -3978.220801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.62854 -39.67998 -39.41012 -37.82694 -35.13491 -34.54895 -33.44245 -32.03270 -31.40004 -30.91772 -30.17512 -28.67039 -25.11231 -24.01774 -23.68968 -22.98575 -22.41652 -21.74933 -21.39121 -20.46205 -19.49509 -18.90392 -17.79063 -17.10488 -16.87047 -16.68671 -15.91135 -15.49368 -15.23926 -15.12643 -14.82737 -14.63857 -14.43139 -14.09649 -13.83277 -13.60837 -13.39450 -13.20085 -12.88830 -12.57904 -12.23512 -12.12618 -11.76755 -11.62299 -11.45896 -11.31595 -11.04691 -10.87807 -10.85806 -10.67994 -10.31011 -10.24171 -9.68902 -9.68489 -9.64786 -9.33562 -9.30084 -9.13198 -9.00839 -8.97665 -7.48154 -5.91439 -3.29987 0.30823 1.01013 1.18428 1.85435 2.17665 3.00755 3.08062 3.25972 3.30449 3.33819 3.38138 4.23704 4.38452 4.42473 4.45460 4.51803 4.54931 4.72140 4.78320 4.98137 5.00969 5.07439 5.17242 5.17926 5.32856 5.36336 5.56452 5.61400 5.64241 5.72128 5.78291 5.82576 5.84218 5.91876 5.99326 6.10113 6.13192 6.24893 6.29016 6.37626 6.49356 6.60098 6.62816 6.91707 7.03281 7.45273 7.83702 8.02701 8.16873 8.26531 9.03402 9.75327 9.93567 11.25922 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003241 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.216902 B = 8637.347937 C = 9941.795460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.015 3.985 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.743 5.743 10 C 0.197 3.803 11 H 0.071 0.929 12 C 0.117 3.883 13 N -0.694 5.694 14 C 0.587 3.413 15 O -0.536 6.536 16 C -0.065 4.065 17 C 0.011 3.989 18 N -0.265 5.265 19 N -0.056 5.056 20 N -0.212 5.212 21 C 0.105 3.895 22 C -0.054 4.054 23 C -0.110 4.110 24 C -0.100 4.100 25 C -0.117 4.117 26 C -0.090 4.090 27 C -0.178 4.178 28 C -0.167 4.167 29 C -0.167 4.167 30 H 0.261 0.739 31 H 0.364 0.636 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.207 0.793 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.435 -6.392 6.840 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.182 4.182 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.111 0.889 9 N -0.387 5.387 10 C 0.087 3.913 11 H 0.089 0.911 12 C -0.007 4.007 13 N -0.346 5.346 14 C 0.370 3.630 15 O -0.413 6.413 16 C -0.197 4.197 17 C -0.148 4.148 18 N -0.128 5.128 19 N -0.035 5.035 20 N -0.003 5.003 21 C 0.016 3.984 22 C -0.075 4.075 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.200 4.200 28 C -0.204 4.204 29 C -0.204 4.204 30 H 0.071 0.929 31 H 0.197 0.803 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.224 0.776 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.045 -6.310 8.057 22.506 hybrid contribution -0.071 1.297 -1.180 1.755 sum 19.974 -5.013 6.876 21.711 Atomic orbital electron populations 1.69680 1.05107 1.26019 1.56423 1.24652 0.95084 0.96980 1.01529 0.86700 0.79143 0.85446 0.77991 1.20987 1.21713 1.20436 1.18985 0.80131 0.94615 1.44204 0.88912 1.42893 1.04249 1.02586 1.88950 1.19988 0.89754 0.90435 0.91147 0.91114 1.21778 0.99008 0.99852 0.80048 1.45739 1.10859 1.65951 1.12087 1.16643 0.85509 0.78140 0.82718 1.90838 1.21565 1.51018 1.77913 1.22147 0.90392 1.14187 0.92966 1.24123 0.98757 1.00867 0.91044 1.74929 1.05085 1.17279 1.15509 1.78382 1.01767 1.14882 1.08455 1.44717 1.07860 1.41930 1.05756 1.17518 0.77964 0.98227 1.04711 1.21041 0.97459 0.94170 0.94794 1.21024 0.91622 1.00488 0.99758 1.21364 1.00057 0.94371 0.96008 1.21013 0.94740 0.97909 0.99853 1.21020 0.92397 0.98763 0.98765 1.22997 0.99083 1.03443 0.94476 1.22844 1.03003 0.95596 0.98950 1.22869 0.96768 0.99525 1.01255 0.92862 0.80284 0.91318 0.90795 0.74776 0.77603 0.84851 0.84724 0.85117 0.84756 0.84842 0.89266 0.87431 0.90962 0.90748 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.78 13.97 55.49 0.78 -26.01 16 2 C 0.01 0.38 5.50 -17.43 -0.10 0.29 16 3 Si 0.88 20.40 27.78 -169.99 -4.72 15.68 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.06 6.45 56.52 0.36 -5.70 16 7 C -0.25 -5.98 8.83 -15.06 -0.13 -6.11 16 8 H 0.09 2.43 7.74 -52.48 -0.41 2.02 16 9 N -0.74 -14.45 2.57 -53.43 -0.14 -14.59 16 10 C 0.20 3.12 2.89 -67.93 -0.20 2.92 16 11 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 12 C 0.12 1.63 5.25 -4.04 -0.02 1.61 16 13 N -0.69 -9.72 5.40 -61.47 -0.33 -10.06 16 14 C 0.59 8.62 7.42 -12.64 -0.09 8.52 16 15 O -0.54 -8.60 13.20 5.25 0.07 -8.53 16 16 C -0.06 -0.94 6.79 -82.23 -0.56 -1.50 16 17 C 0.01 0.16 11.55 -17.33 -0.20 -0.04 16 18 N -0.26 -4.16 12.34 30.49 0.38 -3.78 16 19 N -0.06 -0.86 12.95 60.35 0.78 -0.08 16 20 N -0.21 -3.07 3.48 -7.21 -0.03 -3.10 16 21 C 0.11 1.36 5.89 -83.62 -0.49 0.87 16 22 C -0.05 -0.64 7.44 -39.40 -0.29 -0.93 16 23 C -0.11 -1.01 10.04 -39.61 -0.40 -1.41 16 24 C -0.10 -0.78 10.04 -39.55 -0.40 -1.17 16 25 C -0.12 -0.97 10.04 -39.61 -0.40 -1.37 16 26 C -0.09 -0.97 9.82 -39.40 -0.39 -1.36 16 27 C -0.18 -2.72 5.70 -90.62 -0.52 -3.24 16 28 C -0.17 -2.80 9.80 -26.69 -0.26 -3.06 16 29 C -0.17 -2.77 9.92 -26.69 -0.26 -3.04 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.36 7.28 5.69 -40.82 -0.23 7.05 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.41 5.82 7.06 -40.82 -0.29 5.53 16 35 H 0.21 2.39 7.57 -52.48 -0.40 2.00 16 36 H 0.13 1.66 6.73 -52.48 -0.35 1.30 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 42 H 0.11 2.12 6.82 -51.93 -0.35 1.77 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.11 2.14 6.74 -51.93 -0.35 1.79 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -30.11 376.89 -8.02 -38.13 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -5.77 Total: 15.68 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -4.71 Total: -9.02 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 1.44 Total: -57.62 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.72 Total: 15.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.11 -8.02 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661172107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.690 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds