Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99883 * 2 1 4 4 H 1.48502 * 109.47214 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00328 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00219 * 3 2 1 7 7 C 1.38812 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99699 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00002 * 185.00078 * 9 7 2 11 11 H 1.08998 * 109.46888 * 329.22042 * 10 9 7 12 12 C 1.53003 * 109.46893 * 209.22273 * 10 9 7 13 13 N 1.46498 * 109.47076 * 53.79134 * 12 10 9 14 14 C 1.34782 * 120.00154 * 175.22857 * 13 12 10 15 15 O 1.21630 * 119.99304 * 5.30266 * 14 13 12 16 16 C 1.47141 * 120.00508 * 185.30194 * 14 13 12 17 17 C 1.37081 * 127.21175 * 353.85887 * 16 14 13 18 18 N 1.33307 * 106.37479 * 180.21562 * 17 16 14 19 19 N 1.28504 * 109.49887 * 359.77724 * 18 17 16 20 20 N 1.28724 * 110.67027 * 359.97438 * 19 18 17 21 21 C 1.40083 * 126.05780 * 179.97438 * 20 19 18 22 22 C 1.38867 * 120.06670 * 135.75720 * 21 20 19 23 23 C 1.38108 * 119.92909 * 180.02562 * 22 21 20 24 24 C 1.38286 * 120.06832 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.13875 * 0.02562 * 24 23 22 26 26 C 1.38106 * 120.07044 * 359.97438 * 25 24 23 27 27 C 1.52992 * 109.47507 * 89.22103 * 10 9 7 28 28 C 1.53001 * 117.50052 * 8.74703 * 27 10 9 29 29 C 1.53003 * 117.49927 * 300.09003 * 27 10 9 30 30 H 0.96992 * 119.99982 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99803 * 4.99287 * 9 7 2 32 32 H 1.09005 * 109.47044 * 293.79015 * 12 10 9 33 33 H 1.09002 * 109.46986 * 173.78624 * 12 10 9 34 34 H 0.96997 * 120.00031 * 355.22096 * 13 12 10 35 35 H 1.08003 * 126.81183 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.03427 * 0.04252 * 22 21 20 37 37 H 1.07994 * 119.96327 * 180.27688 * 23 22 21 38 38 H 1.08002 * 119.92717 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.96201 * 179.97438 * 25 24 23 40 40 H 1.08009 * 120.03792 * 179.97438 * 26 25 24 41 41 H 1.09001 * 115.55419 * 154.41880 * 27 10 9 42 42 H 1.09005 * 117.49560 * 359.97438 * 28 27 10 43 43 H 1.09001 * 117.50402 * 145.01959 * 28 27 10 44 44 H 1.09005 * 117.49754 * 214.98096 * 29 27 10 45 45 H 1.09002 * 117.49937 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4660 -0.1122 11 1 3.5293 -3.2652 0.3458 12 6 5.4577 -2.3404 0.6052 13 7 5.2372 -1.8861 1.9804 14 6 6.2756 -1.7956 2.8349 15 8 7.4079 -1.9978 2.4394 16 6 6.0396 -1.4523 4.2461 17 6 4.8515 -1.0834 4.8220 18 7 5.1108 -0.8644 6.1111 19 7 6.3567 -1.0797 6.3407 20 7 6.9621 -1.4377 5.2626 21 6 8.3226 -1.7505 5.1459 22 6 8.7204 -2.8652 4.4195 23 6 10.0625 -3.1712 4.3068 24 6 11.0097 -2.3686 4.9160 25 6 10.6167 -1.2580 5.6400 26 6 9.2762 -0.9466 5.7564 27 6 4.3496 -2.7898 -1.5885 28 6 4.0003 -1.7092 -2.6139 29 6 3.1189 -2.9538 -2.4827 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3653 0.0720 32 1 6.0835 -1.6188 0.0800 33 1 5.9543 -3.3106 0.6184 34 1 4.3440 -1.6503 2.2760 35 1 3.8959 -0.9855 4.3284 36 1 7.9811 -3.4919 3.9429 37 1 10.3727 -4.0353 3.7383 38 1 12.0585 -2.6103 4.8267 39 1 11.3588 -0.6334 6.1150 40 1 8.9698 -0.0793 6.3224 41 1 5.2120 -3.4226 -1.7983 42 1 3.6008 -0.7678 -2.2366 43 1 4.6326 -1.6313 -3.4983 44 1 3.1718 -3.6943 -3.2808 45 1 2.1400 -2.8315 -2.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661172107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 129.010056 kcal Electronic energy + Delta-G solvation = -29311.352926 eV Core-core repulsion = 25332.327628 eV Total energy + Delta-G solvation = -3979.025298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.71932 -40.80637 -40.23768 -39.19161 -36.23616 -35.66001 -35.11627 -33.35137 -32.64020 -31.99185 -31.02992 -30.09349 -26.28614 -25.18173 -24.89482 -24.32409 -23.44096 -22.99372 -22.47941 -21.56039 -20.79515 -20.10519 -19.40853 -18.29221 -17.92614 -17.44131 -17.12069 -16.85387 -16.41912 -16.18090 -16.12215 -15.83296 -15.62238 -15.12558 -14.98134 -14.70495 -14.56578 -14.47918 -14.24784 -14.04993 -13.35574 -13.15675 -12.95881 -12.87082 -12.65090 -12.47136 -12.44791 -12.41529 -12.11276 -12.03957 -11.79782 -11.65088 -11.40241 -11.09048 -10.87679 -10.81982 -10.64295 -10.16550 -10.01196 -9.81678 -9.31585 -7.95625 -5.28647 -0.66314 0.25333 0.32015 0.84943 1.05225 1.39153 1.41602 1.48474 1.87516 1.97354 2.51152 2.60593 3.09675 3.17286 3.34305 3.39042 3.60446 3.64044 3.78652 3.81496 3.87251 4.06684 4.14010 4.25989 4.32661 4.33473 4.40053 4.48535 4.50124 4.55780 4.65265 4.76528 4.85570 4.92337 4.99901 5.15939 5.18050 5.20267 5.22863 5.34581 5.41485 5.42570 5.53792 5.62456 5.86098 5.89738 6.26628 6.29864 6.87725 7.04852 7.13877 7.87508 8.05478 9.25528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003241 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.216902 B = 8637.347937 C = 9941.795460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.051 4.051 3 Si 0.934 3.066 4 H -0.289 1.289 5 H -0.307 1.307 6 H -0.252 1.252 7 C -0.204 4.204 8 H 0.066 0.934 9 N -0.741 5.741 10 C 0.195 3.805 11 H 0.068 0.932 12 C 0.127 3.873 13 N -0.693 5.693 14 C 0.593 3.407 15 O -0.547 6.547 16 C -0.076 4.076 17 C 0.013 3.987 18 N -0.289 5.289 19 N -0.071 5.071 20 N -0.204 5.204 21 C 0.068 3.932 22 C -0.071 4.071 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.111 4.111 26 C -0.103 4.103 27 C -0.160 4.160 28 C -0.174 4.174 29 C -0.176 4.176 30 H 0.254 0.746 31 H 0.365 0.635 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.414 0.586 35 H 0.225 0.775 36 H 0.120 0.880 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.596 -7.292 6.442 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.242 4.242 3 Si 0.764 3.236 4 H -0.216 1.216 5 H -0.234 1.234 6 H -0.177 1.177 7 C -0.335 4.335 8 H 0.084 0.916 9 N -0.384 5.384 10 C 0.086 3.914 11 H 0.086 0.914 12 C 0.003 3.997 13 N -0.344 5.344 14 C 0.376 3.624 15 O -0.425 6.425 16 C -0.208 4.208 17 C -0.147 4.147 18 N -0.151 5.151 19 N -0.049 5.049 20 N 0.004 4.996 21 C -0.021 4.021 22 C -0.091 4.091 23 C -0.131 4.131 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.181 4.181 28 C -0.211 4.211 29 C -0.213 4.213 30 H 0.063 0.937 31 H 0.198 0.802 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.252 0.748 35 H 0.242 0.758 36 H 0.138 0.862 37 H 0.176 0.824 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.277 -7.243 7.671 26.471 hybrid contribution -1.224 1.420 -1.067 2.157 sum 23.053 -5.823 6.605 24.677 Atomic orbital electron populations 1.69839 1.06974 1.26125 1.60194 1.25222 0.95553 1.00063 1.03408 0.85742 0.78813 0.81528 0.77526 1.21566 1.23446 1.17694 1.18861 0.81945 0.93012 1.39713 0.91613 1.42827 1.02616 1.04209 1.88766 1.20158 0.90499 0.88475 0.92235 0.91404 1.21705 0.97353 1.01080 0.79517 1.45703 1.10708 1.65880 1.12122 1.16563 0.85302 0.77818 0.82669 1.90827 1.21997 1.51625 1.78096 1.22224 0.90695 1.14810 0.93100 1.24451 0.99447 1.00204 0.90609 1.74896 1.05453 1.18344 1.16420 1.78321 1.01861 1.15676 1.09074 1.44913 1.08597 1.40718 1.05328 1.17946 0.77427 0.99837 1.06885 1.21087 0.98560 0.94075 0.95404 1.21385 0.90675 1.01356 0.99672 1.21829 1.01633 0.93125 0.94045 1.21437 0.94084 0.98247 0.99146 1.21217 0.93378 0.98761 0.98927 1.23007 0.99333 1.02732 0.93041 1.22805 1.03600 0.94227 1.00508 1.22788 0.95426 1.00504 1.02565 0.93728 0.80157 0.91260 0.88551 0.74820 0.75845 0.86214 0.82445 0.81385 0.81632 0.85056 0.85644 0.90680 0.88450 0.88179 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.00 13.97 21.65 0.30 -58.70 16 2 C -0.05 -2.71 5.50 84.86 0.47 -2.25 16 3 Si 0.93 42.77 27.78 68.60 1.91 44.68 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.25 -10.28 6.45 99.48 0.64 -9.64 16 7 C -0.20 -9.91 8.83 84.03 0.74 -9.17 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 N -0.74 -28.07 2.57 -322.94 -0.83 -28.90 16 10 C 0.19 5.78 2.89 44.99 0.13 5.91 16 11 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 12 C 0.13 3.16 5.25 86.38 0.45 3.62 16 13 N -0.69 -18.17 5.40 -466.64 -2.52 -20.69 16 14 C 0.59 16.67 7.42 86.58 0.64 17.32 16 15 O -0.55 -16.69 13.20 -4.13 -0.05 -16.74 16 16 C -0.08 -2.18 6.79 40.36 0.27 -1.90 16 17 C 0.01 0.36 11.55 84.20 0.97 1.33 16 18 N -0.29 -9.18 12.34 -57.46 -0.71 -9.89 16 19 N -0.07 -2.22 12.95 37.02 0.48 -1.74 16 20 N -0.20 -5.95 3.48 -176.72 -0.62 -6.57 16 21 C 0.07 1.73 5.89 38.12 0.22 1.95 16 22 C -0.07 -1.60 7.44 22.39 0.17 -1.43 16 23 C -0.11 -1.75 10.04 22.25 0.22 -1.53 16 24 C -0.09 -1.03 10.04 22.29 0.22 -0.81 16 25 C -0.11 -1.50 10.04 22.25 0.22 -1.27 16 26 C -0.10 -2.11 9.82 22.39 0.22 -1.89 16 27 C -0.16 -4.41 5.70 -10.79 -0.06 -4.47 16 28 C -0.17 -5.49 9.80 30.62 0.30 -5.19 16 29 C -0.18 -5.58 9.92 30.62 0.30 -5.27 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.36 13.98 5.69 -92.71 -0.53 13.45 16 32 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.41 11.07 7.06 -92.71 -0.65 10.41 16 35 H 0.23 5.11 7.57 -2.91 -0.02 5.09 16 36 H 0.12 2.94 6.73 -2.91 -0.02 2.92 16 37 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 39 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.13 2.67 8.11 -2.39 -0.02 2.65 16 42 H 0.07 2.90 6.82 -2.38 -0.02 2.88 16 43 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 45 H 0.07 2.80 6.74 -2.39 -0.02 2.79 16 Total: -1.00 -68.29 376.89 3.26 -65.03 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.20 Total: 38.58 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.51 Total: -5.06 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -3.89 Total: -126.49 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.05 Total: -16.74 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.91 Total: 44.68 kcal Total: -68.29 3.26 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661172107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.040 kcal (2) G-P(sol) polarization free energy of solvation -68.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds