Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00189 * 2 1 4 4 H 1.48500 * 109.47048 * 270.00166 * 3 2 1 5 5 H 1.48500 * 109.46970 * 30.00360 * 3 2 1 6 6 H 1.48496 * 109.47032 * 150.00460 * 3 2 1 7 7 C 1.38794 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00198 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99883 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47065 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00490 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.62669 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77977 * 233.63303 * 14 13 11 16 16 C 1.53043 * 109.30966 * 305.36980 * 15 14 13 17 17 C 1.53037 * 109.54131 * 61.36377 * 16 15 14 18 18 H 1.08996 * 109.49712 * 58.61523 * 17 16 15 19 19 C 1.53003 * 109.50130 * 178.68555 * 17 16 15 20 20 N 1.46890 * 109.47493 * 184.99922 * 19 17 16 21 21 C 1.46899 * 111.00432 * 179.97438 * 20 19 17 22 22 H 1.09006 * 110.53499 * 327.61480 * 21 20 19 23 23 C 1.54626 * 110.48813 * 205.00076 * 21 20 19 24 24 C 1.54487 * 101.76119 * 216.52223 * 23 21 20 25 25 N 1.46756 * 105.47255 * 25.41844 * 24 23 21 26 26 C 1.34415 * 111.30335 * 342.97792 * 25 24 23 27 27 O 1.21282 * 124.94358 * 180.37418 * 26 25 24 28 28 C 1.46920 * 120.63355 * 180.02562 * 13 11 10 29 29 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47097 * 60.00441 * 10 9 7 31 31 H 1.08997 * 109.47509 * 299.99776 * 10 9 7 32 32 H 1.09000 * 109.58604 * 113.84665 * 14 13 11 33 33 H 1.09005 * 109.70660 * 353.49303 * 14 13 11 34 34 H 1.08997 * 109.50415 * 185.41572 * 15 14 13 35 35 H 1.09003 * 109.49364 * 65.31438 * 15 14 13 36 36 H 1.08998 * 109.45885 * 301.34232 * 16 15 14 37 37 H 1.08997 * 109.44926 * 181.37779 * 16 15 14 38 38 H 1.08999 * 109.47098 * 64.99285 * 19 17 16 39 39 H 1.09005 * 109.46345 * 305.00041 * 19 17 16 40 40 H 1.00903 * 111.00001 * 56.04263 * 20 19 17 41 41 H 1.08996 * 110.97243 * 98.40447 * 23 21 20 42 42 H 1.08997 * 110.96807 * 334.64084 * 23 21 20 43 43 H 1.09002 * 110.23989 * 144.41449 * 24 23 21 44 44 H 1.08993 * 110.24361 * 266.32776 * 24 23 21 45 45 H 0.97010 * 124.35052 * 163.01029 * 25 24 23 46 46 H 1.08993 * 109.58973 * 6.57703 * 28 13 11 47 47 H 1.09003 * 109.58742 * 246.15342 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8439 -6.3432 -0.0008 14 6 4.2957 -6.1174 -0.0003 15 6 4.9156 -6.8915 -1.1678 16 6 4.5083 -8.3636 -1.0720 17 6 2.9855 -8.4808 -1.1690 18 1 2.6469 -8.0508 -2.1116 19 6 2.5817 -9.9553 -1.1061 20 7 1.1333 -10.0758 -1.3190 21 6 0.7084 -11.4810 -1.2658 22 1 1.4955 -12.1331 -1.6446 23 6 -0.5960 -11.6829 -2.0712 24 6 -1.3371 -12.7318 -1.2125 25 7 -0.8160 -12.5621 0.1489 26 6 0.3351 -11.8681 0.1482 27 8 0.9802 -11.5917 1.1374 28 6 2.3438 -7.7247 -0.0019 29 1 -0.4850 0.8401 0.0004 30 1 3.1243 -3.7314 0.8895 31 1 3.1243 -3.7314 -0.8905 32 1 4.7202 -6.4714 0.9392 33 1 4.5023 -5.0534 -0.1166 34 1 6.0016 -6.8108 -1.1222 35 1 4.5586 -6.4759 -2.1102 36 1 4.8439 -8.7719 -0.1187 37 1 4.9681 -8.9213 -1.8879 38 1 2.8403 -10.3614 -0.1282 39 1 3.1104 -10.5101 -1.8812 40 1 0.8592 -9.6483 -2.1909 41 1 -0.3835 -12.0733 -3.0664 42 1 -1.1650 -10.7552 -2.1310 43 1 -2.4107 -12.5442 -1.2316 44 1 -1.1236 -13.7365 -1.5771 45 1 -1.2468 -12.9069 0.9468 46 1 1.2604 -7.7210 -0.1207 47 1 2.6088 -8.2100 0.9374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661762350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = -102.762980 kcal Electronic energy + Delta-G solvation = -27412.565124 eV Core-core repulsion = 23526.640593 eV Total energy + Delta-G solvation = -3885.924530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38974 -41.07913 -38.78404 -37.46677 -36.50841 -34.58728 -34.09443 -32.56720 -31.18399 -30.19473 -27.83006 -27.65239 -26.09554 -25.58478 -23.16038 -22.73983 -21.54369 -20.96520 -20.32919 -19.44662 -18.37138 -18.11842 -17.68650 -17.05344 -16.87802 -16.64406 -16.26820 -16.06062 -15.88950 -15.60330 -15.23081 -14.83027 -14.75545 -14.64385 -14.49841 -14.38082 -14.14502 -14.03237 -13.45852 -13.41554 -13.21970 -13.15124 -13.02642 -12.88651 -12.68397 -12.56329 -12.08486 -11.99676 -11.82342 -11.71011 -11.59233 -11.36550 -11.14105 -11.03801 -10.81406 -10.26165 -10.04858 -9.64886 -9.36817 -8.67803 -8.34279 -6.13101 1.25672 1.42855 1.45982 1.57058 1.58039 1.59084 2.13353 2.27639 2.44555 2.99581 3.15365 3.26006 3.39823 3.59484 3.68630 3.80843 3.86905 4.02873 4.08356 4.11136 4.21196 4.24329 4.26900 4.41724 4.43707 4.47316 4.61954 4.69181 4.72225 4.75508 4.77778 4.93238 4.97158 4.97546 5.09808 5.13292 5.16450 5.24435 5.41587 5.46419 5.60676 5.85697 5.98102 6.04869 6.20005 6.34314 6.41605 7.06460 7.16952 7.30250 8.75161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002249 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.557424 B =12445.145181 C =13511.616702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.121 4.121 11 C 0.529 3.471 12 O -0.568 6.568 13 N -0.608 5.608 14 C 0.094 3.906 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.087 4.087 18 H 0.070 0.930 19 C 0.075 3.925 20 N -0.690 5.690 21 C 0.057 3.943 22 H 0.100 0.900 23 C -0.131 4.131 24 C 0.101 3.899 25 N -0.731 5.731 26 C 0.511 3.489 27 O -0.579 6.579 28 C 0.130 3.870 29 H 0.271 0.729 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.358 0.642 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.413 0.587 46 H 0.067 0.933 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -29.018 -8.441 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.272 4.272 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.341 5.341 14 C -0.028 4.028 15 C -0.165 4.165 16 C -0.146 4.146 17 C -0.107 4.107 18 H 0.088 0.912 19 C -0.054 4.054 20 N -0.324 5.324 21 C -0.057 4.057 22 H 0.117 0.883 23 C -0.168 4.168 24 C -0.022 4.022 25 N -0.386 5.386 26 C 0.297 3.703 27 O -0.458 6.458 28 C 0.007 3.993 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.179 0.821 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.252 0.748 46 H 0.085 0.915 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.383 -28.926 -7.387 30.529 hybrid contribution 1.312 0.889 -0.003 1.584 sum 7.695 -28.037 -7.390 29.998 Atomic orbital electron populations 1.70194 1.08024 1.28615 1.48011 1.26162 0.95997 1.03385 0.93715 0.84928 0.78164 0.75847 0.78875 1.19118 1.20302 1.18171 1.23188 0.95317 0.91843 1.58889 0.89897 1.85612 1.10693 0.99307 1.97013 1.23353 1.03312 0.94330 1.06186 1.20183 0.86054 0.86734 0.75329 1.90668 1.17306 1.85820 1.50863 1.48174 1.07467 1.05525 1.72962 1.22084 0.77882 1.02206 1.00606 1.21892 1.01950 0.95196 0.97474 1.21536 0.93086 0.96529 1.03493 1.21438 0.96811 0.94699 0.97749 0.91173 1.21975 0.86865 0.94969 1.01595 1.60055 1.15846 1.14165 1.42369 1.22209 0.99694 0.91088 0.92662 0.88299 1.22931 0.93337 1.00657 0.99925 1.22289 1.00032 1.00313 0.79600 1.46297 1.24732 1.56294 1.11268 1.21469 0.80771 0.76262 0.91820 1.90693 1.57162 1.57181 1.40720 1.21473 0.99649 0.79596 0.98536 0.91984 0.87785 0.87369 0.89905 0.89361 0.87808 0.91998 0.91134 0.89308 0.91820 0.92115 0.82105 0.85854 0.89642 0.88496 0.88403 0.74850 0.91474 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.08 13.22 21.65 0.29 -56.80 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.54 -31.82 9.50 67.95 0.65 -31.17 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -8.89 20.57 -56.49 -1.16 -10.05 16 10 C -0.12 -5.16 4.50 71.24 0.32 -4.84 16 11 C 0.53 22.08 7.72 87.66 0.68 22.76 16 12 O -0.57 -29.05 15.27 -3.04 -0.05 -29.09 16 13 N -0.61 -18.87 2.97 -818.98 -2.43 -21.31 16 14 C 0.09 2.06 6.34 86.36 0.55 2.60 16 15 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 16 C -0.11 -1.58 5.17 30.62 0.16 -1.43 16 17 C -0.09 -1.72 2.48 -10.73 -0.03 -1.75 16 18 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 19 C 0.08 1.31 4.90 86.31 0.42 1.73 16 20 N -0.69 -12.59 5.89 -491.62 -2.90 -15.49 16 21 C 0.06 0.80 3.26 44.91 0.15 0.95 16 22 H 0.10 1.05 7.83 -2.38 -0.02 1.03 16 23 C -0.13 -0.90 6.60 31.65 0.21 -0.69 16 24 C 0.10 0.59 7.78 86.84 0.68 1.26 16 25 N -0.73 -10.23 6.24 -459.82 -2.87 -13.10 16 26 C 0.51 11.16 8.06 87.90 0.71 11.87 16 27 O -0.58 -18.73 17.34 -3.04 -0.05 -18.78 16 28 C 0.13 3.77 5.53 86.35 0.48 4.25 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.10 4.09 7.94 -2.39 -0.02 4.07 16 31 H 0.11 4.15 7.70 -2.40 -0.02 4.13 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.94 5.95 -2.38 -0.01 1.93 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.42 7.49 -2.39 -0.02 1.40 16 39 H 0.06 0.74 8.08 -2.38 -0.02 0.72 16 40 H 0.36 5.45 8.37 -89.69 -0.75 4.70 16 41 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.08 0.81 8.04 -2.39 -0.02 0.79 16 43 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.41 5.09 8.96 -92.70 -0.83 4.26 16 46 H 0.07 2.44 6.79 -2.39 -0.02 2.43 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -88.98 390.46 -2.13 -91.10 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.59 Total: 22.38 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.61 Total: 4.88 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -7.91 Total: -106.69 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.10 Total: -47.88 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -88.98 -2.13 -91.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661762350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.658 kcal (2) G-P(sol) polarization free energy of solvation -88.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds