Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47129 * 240.00199 * 3 2 1 5 5 H 1.48497 * 109.46701 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47138 * 120.00002 * 3 2 1 7 7 C 1.38803 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 S 1.76191 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00176 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47247 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00174 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00111 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47203 * 179.97438 * 14 13 11 16 16 C 1.30999 * 119.99881 * 127.00728 * 15 14 13 17 17 C 1.50700 * 120.00317 * 7.56218 * 16 15 14 18 18 N 1.46892 * 109.47602 * 127.15429 * 17 16 15 19 19 C 1.46900 * 111.00410 * 180.02562 * 18 17 16 20 20 C 1.50693 * 109.47639 * 180.02562 * 19 18 17 21 21 O 1.21286 * 119.99644 * 359.97438 * 20 19 18 22 22 N 1.34771 * 120.00559 * 179.72500 * 20 19 18 23 23 C 1.47030 * 125.64533 * 359.96898 * 22 20 19 24 24 C 1.54309 * 107.27591 * 180.96768 * 23 22 20 25 25 C 1.55163 * 102.86441 * 22.52407 * 24 23 22 26 26 C 1.47422 * 125.65386 * 180.27391 * 22 20 19 27 27 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46926 * 59.99658 * 10 9 7 29 29 H 1.09002 * 109.47005 * 300.00066 * 10 9 7 30 30 H 0.96997 * 119.99846 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47375 * 59.99903 * 14 13 11 32 32 H 1.08995 * 109.47394 * 299.99912 * 14 13 11 33 33 H 1.07999 * 120.00690 * 307.00539 * 15 14 13 34 34 H 1.08003 * 120.00314 * 187.55887 * 16 15 14 35 35 H 1.09002 * 109.46782 * 7.15566 * 17 16 15 36 36 H 1.09002 * 109.46895 * 247.15741 * 17 16 15 37 37 H 1.00903 * 111.00323 * 56.04988 * 18 17 16 38 38 H 1.09002 * 109.46972 * 59.99654 * 19 18 17 39 39 H 1.09000 * 109.47202 * 300.00437 * 19 18 17 40 40 H 1.08995 * 109.87703 * 300.50956 * 23 22 20 41 41 H 1.08997 * 109.88335 * 61.67516 * 23 22 20 42 42 H 1.08996 * 110.92607 * 264.10877 * 24 23 22 43 43 H 1.08998 * 110.59102 * 140.78033 * 24 23 22 44 44 H 1.09001 * 111.00305 * 206.23013 * 25 24 23 45 45 H 1.09000 * 111.00334 * 82.37657 * 25 24 23 46 46 H 1.09006 * 110.36745 * 274.67199 * 26 22 20 47 47 H 1.08993 * 110.36655 * 36.88400 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7151 -0.0008 15 6 3.4846 -8.6838 -0.0009 16 6 3.5475 -9.6279 0.9050 17 6 2.3869 -9.8542 1.8393 18 7 1.9908 -11.2680 1.7949 19 6 0.8590 -11.5263 2.6950 20 6 0.4822 -12.9836 2.6230 21 8 1.0957 -13.7332 1.8932 22 7 -0.5333 -13.4550 3.3733 23 6 -1.3534 -12.6619 4.3008 24 6 -2.3698 -13.6237 4.9511 25 6 -1.6908 -15.0088 4.7833 26 6 -1.0018 -14.8524 3.4047 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7314 0.8894 29 1 3.1244 -3.7314 -0.8905 30 1 3.8007 -6.1836 -0.0004 31 1 1.7219 -7.8753 -0.8910 32 1 1.7213 -7.8751 0.8889 33 1 4.2602 -8.5997 -0.7478 34 1 4.4310 -10.2443 0.9823 35 1 1.5466 -9.2316 1.5323 36 1 2.6818 -9.5913 2.8552 37 1 2.7712 -11.8693 2.0131 38 1 0.0082 -10.9153 2.3935 39 1 1.1428 -11.2748 3.7169 40 1 -0.7197 -12.2158 5.0672 41 1 -1.8822 -11.8814 3.7536 42 1 -3.3239 -13.5957 4.4249 43 1 -2.5029 -13.3848 6.0062 44 1 -2.4325 -15.8073 4.7611 45 1 -0.9563 -15.1817 5.5698 46 1 -1.7163 -15.0312 2.6011 47 1 -0.1581 -15.5373 3.3206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668721004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -72.903048 kcal Electronic energy + Delta-G solvation = -25456.680856 eV Core-core repulsion = 21572.051149 eV Total energy + Delta-G solvation = -3884.629707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08566 -40.62650 -38.64710 -37.92575 -36.08063 -34.57399 -34.02287 -32.74060 -31.07910 -30.14746 -28.73973 -27.68826 -26.52373 -25.13283 -23.87959 -22.05239 -21.79252 -20.59604 -20.07956 -19.48491 -18.27277 -17.82964 -17.61007 -17.33864 -17.17377 -16.86656 -16.71258 -16.16275 -15.89975 -15.65413 -15.49319 -15.16801 -14.68002 -14.52050 -14.45358 -14.26825 -14.18810 -13.87210 -13.69689 -13.52950 -13.24471 -13.15835 -13.13429 -12.88197 -12.84912 -12.61076 -12.21526 -12.15193 -11.77268 -11.68577 -11.61861 -11.11726 -11.05956 -10.97815 -10.41396 -10.26619 -9.98688 -9.72327 -9.39373 -8.65507 -8.33268 -6.11473 0.97409 1.31273 1.45074 1.49536 1.52480 1.59830 1.62221 1.89274 2.28586 2.45522 3.00802 3.23339 3.34592 3.45733 3.66544 3.70919 3.86898 3.99493 4.02944 4.06466 4.18151 4.28045 4.28989 4.33797 4.34652 4.41903 4.46664 4.52788 4.64174 4.66203 4.74495 4.82760 4.92729 4.96285 4.98384 5.10056 5.23230 5.35131 5.38686 5.42904 5.56685 5.76416 5.84439 6.20849 6.25386 6.44855 6.53313 7.07867 7.07887 7.25420 8.75680 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.001496 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.756762 B =18708.802674 C =19940.434594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.708 5.708 14 C 0.139 3.861 15 C -0.163 4.163 16 C -0.124 4.124 17 C 0.073 3.927 18 N -0.683 5.683 19 C 0.049 3.951 20 C 0.522 3.478 21 O -0.575 6.575 22 N -0.624 5.624 23 C 0.088 3.912 24 C -0.127 4.127 25 C -0.125 4.125 26 C 0.095 3.905 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.351 0.649 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -29.420 12.024 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.017 3.983 15 C -0.182 4.182 16 C -0.144 4.144 17 C -0.054 4.054 18 N -0.316 5.316 19 C -0.083 4.083 20 C 0.311 3.689 21 O -0.454 6.454 22 N -0.359 5.359 23 C -0.034 4.034 24 C -0.165 4.165 25 C -0.163 4.163 26 C -0.027 4.027 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.170 0.830 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.829 -29.962 11.046 31.986 hybrid contribution 2.280 1.234 0.521 2.644 sum 4.109 -28.728 11.568 31.241 Atomic orbital electron populations 1.70176 1.07974 1.28662 1.47932 1.26121 0.95952 1.03289 0.93705 0.85007 0.77804 0.75710 0.79491 1.18710 1.20416 1.18624 1.23185 0.95384 0.92031 1.59003 0.89874 1.85567 1.10591 0.99206 1.97064 1.23375 1.03555 0.94228 1.06895 1.20099 0.86228 0.86704 0.75157 1.90688 1.17444 1.86118 1.50314 1.45728 1.10407 1.04710 1.75344 1.20490 0.95973 0.79741 1.02130 1.22752 0.99030 0.97063 0.99370 1.22838 0.98177 0.98301 0.95040 1.21251 0.97127 0.88641 0.98413 1.60103 1.10700 1.05378 1.55399 1.21807 0.96952 0.92026 0.97496 1.20664 0.78814 0.90787 0.78622 1.90693 1.53824 1.60192 1.40688 1.48684 1.32933 1.11365 1.42887 1.22362 0.93493 0.95100 0.92457 1.22670 0.97784 0.93424 1.02632 1.22777 1.00215 0.98572 0.94701 1.22363 0.98598 0.82434 0.99292 0.91999 0.87054 0.87185 0.74567 0.92319 0.90971 0.84316 0.84686 0.90244 0.92717 0.82999 0.87302 0.89861 0.89839 0.90500 0.89833 0.87988 0.88046 0.90269 0.91652 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.34 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.55 -31.21 9.50 67.96 0.65 -30.57 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.61 7.85 87.66 0.69 20.30 16 12 O -0.57 -26.37 15.86 -3.02 -0.05 -26.42 16 13 N -0.71 -17.81 5.55 -466.81 -2.59 -20.40 16 14 C 0.14 3.20 5.76 85.63 0.49 3.69 16 15 C -0.16 -2.59 9.63 25.65 0.25 -2.34 16 16 C -0.12 -1.80 9.77 25.65 0.25 -1.55 16 17 C 0.07 1.15 5.77 85.56 0.49 1.64 16 18 N -0.68 -12.13 6.11 -522.01 -3.19 -15.32 16 19 C 0.05 0.74 5.36 85.55 0.46 1.20 16 20 C 0.52 10.48 7.89 87.66 0.69 11.17 16 21 O -0.57 -16.52 16.46 -3.05 -0.05 -16.57 16 22 N -0.62 -9.16 3.33 -811.84 -2.70 -11.86 16 23 C 0.09 0.68 6.48 86.72 0.56 1.24 16 24 C -0.13 -0.54 6.95 31.78 0.22 -0.32 16 25 C -0.12 -0.70 7.08 31.99 0.23 -0.47 16 26 C 0.10 1.21 6.91 86.85 0.60 1.81 16 27 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.42 7.51 8.46 -92.71 -0.78 6.72 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.76 5.30 -2.39 -0.01 1.74 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.08 1.47 5.30 -2.39 -0.01 1.46 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.35 6.06 8.42 -89.69 -0.76 5.31 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 0.98 8.03 -2.39 -0.02 0.96 16 Total: -1.00 -84.08 406.16 -1.50 -85.59 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.56 Total: 22.33 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.48 Total: 2.43 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -8.20 Total: -103.15 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.10 Total: -42.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -84.08 -1.50 -85.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668721004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.684 kcal (2) G-P(sol) polarization free energy of solvation -84.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds