Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48496 * 109.46700 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.46871 * 29.99561 * 3 2 1 6 6 H 1.48492 * 109.46994 * 149.99859 * 3 2 1 7 7 C 1.38814 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99278 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99976 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46755 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47284 * 65.00255 * 11 10 9 13 13 N 1.46500 * 109.47302 * 305.00113 * 11 10 9 14 14 C 1.34779 * 120.00309 * 155.00461 * 13 11 10 15 15 O 1.21565 * 119.99500 * 359.97438 * 14 13 11 16 16 C 1.47750 * 120.00055 * 179.97438 * 14 13 11 17 17 C 1.40603 * 126.04465 * 179.97438 * 16 14 13 18 18 N 1.31248 * 106.62587 * 179.97438 * 17 16 14 19 19 N 1.40103 * 107.17935 * 359.97438 * 18 17 16 20 20 C 1.40141 * 125.57057 * 179.97438 * 19 18 17 21 21 C 1.38868 * 120.06644 * 0.02599 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.07350 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.13525 * 359.97313 * 23 22 21 25 25 C 1.38117 * 120.06919 * 0.02997 * 24 23 22 26 26 N 1.28707 * 108.86313 * 0.22808 * 19 18 17 27 27 C 1.52998 * 109.46775 * 185.00272 * 11 10 9 28 28 C 1.53000 * 117.49666 * 248.74259 * 27 11 10 29 29 C 1.53009 * 117.49814 * 180.08696 * 27 11 10 30 30 H 0.96993 * 120.00221 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99994 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46584 * 60.00342 * 10 9 7 33 33 H 1.08997 * 109.47226 * 299.99937 * 10 9 7 34 34 H 0.97004 * 119.99665 * 334.99938 * 13 11 10 35 35 H 1.08000 * 126.68718 * 359.93193 * 17 16 14 36 36 H 1.07998 * 120.03346 * 0.24948 * 21 20 19 37 37 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93551 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.96871 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.03442 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.55251 * 34.41450 * 27 11 10 42 42 H 1.08996 * 117.50139 * 0.02562 * 28 27 11 43 43 H 1.09002 * 117.49835 * 145.01958 * 28 27 11 44 44 H 1.08994 * 117.50007 * 214.97652 * 29 27 11 45 45 H 1.08997 * 117.49719 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4982 -4.8135 -0.9317 13 7 0.1440 -4.6763 1.1310 14 6 -1.0804 -5.2372 1.0791 15 8 -1.4215 -5.8617 0.0935 16 6 -2.0080 -5.0931 2.2201 17 6 -3.3081 -5.6223 2.3014 18 7 -3.7853 -5.2679 3.4715 19 7 -2.7892 -4.5229 4.1163 20 6 -2.8942 -3.9542 5.3928 21 6 -4.0610 -4.1092 6.1297 22 6 -4.1611 -3.5480 7.3877 23 6 -3.1014 -2.8320 7.9134 24 6 -1.9382 -2.6759 7.1821 25 6 -1.8318 -3.2346 5.9234 26 7 -1.7639 -4.4416 3.3425 27 6 1.8248 -6.1411 0.1257 28 6 1.8348 -7.0691 -1.0908 29 6 1.0023 -7.4312 0.1417 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8894 34 1 0.4162 -4.1777 1.9173 35 1 -3.8154 -6.2060 1.5475 36 1 -4.8875 -4.6718 5.7213 37 1 -5.0685 -3.6678 7.9611 38 1 -3.1823 -2.3937 8.8971 39 1 -1.1120 -2.1165 7.5954 40 1 -0.9229 -3.1127 5.3529 41 1 2.7234 -6.1095 0.7419 42 1 1.2997 -6.7380 -1.9807 43 1 2.7398 -7.6482 -1.2746 44 1 1.3598 -8.2483 0.7681 45 1 -0.0809 -7.3384 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670549317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 147.067283 kcal Electronic energy + Delta-G solvation = -28846.480838 eV Core-core repulsion = 24868.238561 eV Total energy + Delta-G solvation = -3978.242277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.74522 -39.76077 -39.28373 -37.13373 -35.01929 -33.99446 -33.52279 -32.47372 -31.27601 -31.01819 -29.72478 -27.99950 -25.07562 -24.05221 -23.69197 -22.41666 -22.05907 -21.54683 -21.46507 -20.46438 -19.97981 -18.56428 -17.53234 -16.89158 -16.53602 -16.47608 -16.05885 -15.46058 -15.17931 -14.97415 -14.79473 -14.36930 -14.26871 -13.84423 -13.76560 -13.62927 -13.15318 -13.08349 -12.85179 -12.38089 -12.09961 -11.84946 -11.68655 -11.61589 -11.25945 -11.03728 -11.03442 -10.90162 -10.88635 -10.82021 -10.31455 -10.20672 -10.16430 -9.96435 -9.81448 -9.66860 -9.33781 -8.91822 -8.71386 -8.46605 -6.96282 -5.77575 -3.07684 0.36465 1.01337 1.61931 1.77938 1.83434 3.24629 3.37001 3.42473 3.47444 3.48555 3.49201 3.63583 4.12892 4.55387 4.56629 4.58072 4.74524 4.77158 4.89270 4.97004 5.02601 5.14812 5.17333 5.27567 5.34696 5.46246 5.50799 5.55687 5.66104 5.77614 5.78907 5.86131 5.90043 5.99580 6.07028 6.09289 6.16622 6.23193 6.31637 6.36725 6.45752 6.51812 6.65965 6.72777 6.89316 7.59391 7.68101 7.86292 8.38419 8.40201 9.51600 10.07156 10.42436 11.44605 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007142 B = 0.003858 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.713004 B = 7255.102399 C =10187.815327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.092 0.908 13 N -0.688 5.688 14 C 0.610 3.390 15 O -0.534 6.534 16 C -0.046 4.046 17 C 0.079 3.921 18 N -0.283 5.283 19 N -0.162 5.162 20 C 0.157 3.843 21 C -0.109 4.109 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.098 4.098 25 C -0.108 4.108 26 N -0.193 5.193 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.185 4.185 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.411 0.589 35 H 0.218 0.782 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -12.904 13.407 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.110 0.890 13 N -0.338 5.338 14 C 0.393 3.607 15 O -0.410 6.410 16 C -0.214 4.214 17 C -0.112 4.112 18 N -0.110 5.110 19 N -0.054 5.054 20 C 0.066 3.934 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.137 4.137 24 C -0.117 4.117 25 C -0.129 4.129 26 N -0.037 5.037 27 C -0.184 4.184 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.246 0.754 35 H 0.235 0.765 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.821 -12.703 13.875 19.692 hybrid contribution 0.389 0.913 -0.539 1.129 sum -5.432 -11.790 13.336 18.611 Atomic orbital electron populations 1.69671 1.05115 1.25651 1.57380 1.24743 0.95465 0.97669 1.02820 0.86201 0.78627 0.83867 0.77546 1.21696 1.21837 1.20736 1.19201 0.91016 0.84012 1.43122 0.91102 1.42346 1.05995 0.99716 1.89593 1.20925 0.92966 0.84997 0.99103 1.20899 0.90087 0.93054 0.89573 0.89037 1.45813 1.13669 1.53159 1.21109 1.16589 0.80890 0.79166 0.84085 1.90722 1.76219 1.42440 1.31649 1.23080 0.97600 1.05312 0.95364 1.25130 0.93060 0.98154 0.94844 1.77979 1.13388 1.11769 1.07838 1.48250 1.06928 1.37459 1.12797 1.17405 0.96974 0.98759 0.80236 1.20918 0.96345 1.01102 0.94663 1.21036 0.99306 0.97299 0.94512 1.21334 0.93347 0.98695 1.00366 1.21099 0.98462 0.98791 0.93329 1.21082 0.98360 0.96938 0.96484 1.73803 1.13053 1.15034 1.01768 1.22650 1.01565 0.91313 1.02843 1.22900 1.02025 1.03009 0.92755 1.23265 1.00658 0.97451 1.00866 0.93523 0.78006 0.95667 0.94461 0.75354 0.76527 0.84202 0.84777 0.85177 0.84523 0.83782 0.87790 0.88629 0.89189 0.89868 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.15 5.43 -59.91 -0.33 -18.48 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 C 0.17 2.83 2.43 -67.93 -0.17 2.67 16 12 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 13 N -0.69 -11.57 4.49 -54.78 -0.25 -11.82 16 14 C 0.61 10.29 7.16 -12.37 -0.09 10.20 16 15 O -0.53 -9.61 13.93 5.31 0.07 -9.54 16 16 C -0.05 -0.73 7.09 -82.99 -0.59 -1.32 16 17 C 0.08 1.08 11.91 -16.91 -0.20 0.88 16 18 N -0.28 -4.04 11.90 30.85 0.37 -3.67 16 19 N -0.16 -2.43 4.44 32.48 0.14 -2.29 16 20 C 0.16 2.04 6.74 -83.60 -0.56 1.48 16 21 C -0.11 -1.16 9.65 -39.39 -0.38 -1.54 16 22 C -0.10 -0.84 10.04 -39.61 -0.40 -1.23 16 23 C -0.12 -0.92 10.04 -39.55 -0.40 -1.32 16 24 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 25 C -0.11 -1.27 9.61 -39.40 -0.38 -1.65 16 26 N -0.19 -3.09 10.95 33.29 0.36 -2.73 16 27 C -0.16 -2.31 5.36 -90.62 -0.49 -2.80 16 28 C -0.17 -2.17 10.18 -26.69 -0.27 -2.44 16 29 C -0.19 -2.51 9.74 -26.69 -0.26 -2.77 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.39 10.30 7.33 -40.82 -0.30 10.00 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 6.99 8.30 -40.82 -0.34 6.66 16 35 H 0.22 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.14 1.40 7.67 -52.49 -0.40 1.00 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 1.79 7.67 -52.48 -0.40 1.39 16 41 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 42 H 0.10 1.27 8.05 -51.93 -0.42 0.86 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.12 1.80 5.02 -51.93 -0.26 1.54 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -32.70 386.79 -8.79 -41.49 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -5.85 Total: 16.89 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -4.85 Total: -5.51 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: 1.03 Total: -66.43 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.70 -8.79 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670549317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.561 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds