Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48496 * 109.46700 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.46871 * 29.99561 * 3 2 1 6 6 H 1.48492 * 109.46994 * 149.99859 * 3 2 1 7 7 C 1.38814 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99278 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99976 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46755 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47284 * 65.00255 * 11 10 9 13 13 N 1.46500 * 109.47302 * 305.00113 * 11 10 9 14 14 C 1.34779 * 120.00309 * 155.00461 * 13 11 10 15 15 O 1.21565 * 119.99500 * 359.97438 * 14 13 11 16 16 C 1.47750 * 120.00055 * 179.97438 * 14 13 11 17 17 C 1.40603 * 126.04465 * 179.97438 * 16 14 13 18 18 N 1.31248 * 106.62587 * 179.97438 * 17 16 14 19 19 N 1.40103 * 107.17935 * 359.97438 * 18 17 16 20 20 C 1.40141 * 125.57057 * 179.97438 * 19 18 17 21 21 C 1.38868 * 120.06644 * 0.02599 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.07350 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.13525 * 359.97313 * 23 22 21 25 25 C 1.38117 * 120.06919 * 0.02997 * 24 23 22 26 26 N 1.28707 * 108.86313 * 0.22808 * 19 18 17 27 27 C 1.52998 * 109.46775 * 185.00272 * 11 10 9 28 28 C 1.53000 * 117.49666 * 248.74259 * 27 11 10 29 29 C 1.53009 * 117.49814 * 180.08696 * 27 11 10 30 30 H 0.96993 * 120.00221 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99994 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46584 * 60.00342 * 10 9 7 33 33 H 1.08997 * 109.47226 * 299.99937 * 10 9 7 34 34 H 0.97004 * 119.99665 * 334.99938 * 13 11 10 35 35 H 1.08000 * 126.68718 * 359.93193 * 17 16 14 36 36 H 1.07998 * 120.03346 * 0.24948 * 21 20 19 37 37 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93551 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.96871 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.03442 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.55251 * 34.41450 * 27 11 10 42 42 H 1.08996 * 117.50139 * 0.02562 * 28 27 11 43 43 H 1.09002 * 117.49835 * 145.01958 * 28 27 11 44 44 H 1.08994 * 117.50007 * 214.97652 * 29 27 11 45 45 H 1.08997 * 117.49719 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.4982 -4.8135 -0.9317 13 7 0.1440 -4.6763 1.1310 14 6 -1.0804 -5.2372 1.0791 15 8 -1.4215 -5.8617 0.0935 16 6 -2.0080 -5.0931 2.2201 17 6 -3.3081 -5.6223 2.3014 18 7 -3.7853 -5.2679 3.4715 19 7 -2.7892 -4.5229 4.1163 20 6 -2.8942 -3.9542 5.3928 21 6 -4.0610 -4.1092 6.1297 22 6 -4.1611 -3.5480 7.3877 23 6 -3.1014 -2.8320 7.9134 24 6 -1.9382 -2.6759 7.1821 25 6 -1.8318 -3.2346 5.9234 26 7 -1.7639 -4.4416 3.3425 27 6 1.8248 -6.1411 0.1257 28 6 1.8348 -7.0691 -1.0908 29 6 1.0023 -7.4312 0.1417 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6848 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8894 34 1 0.4162 -4.1777 1.9173 35 1 -3.8154 -6.2060 1.5475 36 1 -4.8875 -4.6718 5.7213 37 1 -5.0685 -3.6678 7.9611 38 1 -3.1823 -2.3937 8.8971 39 1 -1.1120 -2.1165 7.5954 40 1 -0.9229 -3.1127 5.3529 41 1 2.7234 -6.1095 0.7419 42 1 1.2997 -6.7380 -1.9807 43 1 2.7398 -7.6482 -1.2746 44 1 1.3598 -8.2483 0.7681 45 1 -0.0809 -7.3384 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670549317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 126.115350 kcal Electronic energy + Delta-G solvation = -28847.389382 eV Core-core repulsion = 24868.238561 eV Total energy + Delta-G solvation = -3979.150821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.86797 -41.03432 -40.12226 -38.41243 -36.62445 -35.10811 -34.96180 -33.70012 -32.89016 -31.98676 -30.77856 -29.56873 -26.35107 -25.71302 -24.71673 -23.50261 -23.08545 -23.01501 -22.45733 -21.66328 -21.27712 -19.62334 -19.24630 -18.39766 -17.64438 -17.47530 -17.16045 -16.70557 -16.52247 -16.34609 -15.84801 -15.68771 -15.27828 -15.18905 -15.08048 -14.87361 -14.50654 -14.44792 -13.96608 -13.78433 -13.35431 -13.19193 -12.80566 -12.72851 -12.62227 -12.53563 -12.48764 -12.28010 -12.08378 -11.99700 -11.94551 -11.85862 -11.47332 -11.33420 -11.14615 -11.00042 -10.93256 -10.09311 -10.04692 -9.40254 -9.02639 -7.94792 -5.24789 -0.60944 0.26614 0.51577 0.75340 0.81888 1.47017 1.48807 1.57120 1.97329 2.11692 2.52530 2.55836 2.69283 3.02472 3.39662 3.55653 3.59518 3.77118 3.82065 3.87371 3.96435 4.13547 4.15121 4.19143 4.31637 4.33337 4.36224 4.40526 4.45842 4.53894 4.64183 4.81263 4.85426 4.89061 4.97326 5.06848 5.10404 5.21039 5.28222 5.31014 5.34992 5.43743 5.47917 5.49226 5.52576 5.89811 6.24890 6.33962 6.61776 7.04239 7.32469 8.05542 8.29337 9.28289 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007142 B = 0.003858 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.713004 B = 7255.102399 C =10187.815327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.069 0.931 13 N -0.689 5.689 14 C 0.610 3.390 15 O -0.549 6.549 16 C -0.069 4.069 17 C 0.083 3.917 18 N -0.288 5.288 19 N -0.160 5.160 20 C 0.116 3.884 21 C -0.115 4.115 22 C -0.096 4.096 23 C -0.105 4.105 24 C -0.100 4.100 25 C -0.127 4.127 26 N -0.209 5.209 27 C -0.169 4.169 28 C -0.158 4.158 29 C -0.183 4.183 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.408 0.592 35 H 0.246 0.754 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -13.245 15.362 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.087 0.913 13 N -0.338 5.338 14 C 0.394 3.606 15 O -0.426 6.426 16 C -0.235 4.235 17 C -0.108 4.108 18 N -0.116 5.116 19 N -0.053 5.053 20 C 0.026 3.974 21 C -0.136 4.136 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.148 4.148 26 N -0.054 5.054 27 C -0.189 4.189 28 C -0.195 4.195 29 C -0.220 4.220 30 H 0.057 0.943 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.244 0.756 35 H 0.262 0.738 36 H 0.159 0.841 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.176 0.824 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.199 -13.082 15.828 21.182 hybrid contribution 0.191 1.005 -1.015 1.441 sum -5.007 -12.077 14.813 19.757 Atomic orbital electron populations 1.69847 1.06779 1.25889 1.59532 1.25559 0.96239 1.01115 1.03650 0.85144 0.77806 0.79476 0.77357 1.21592 1.22535 1.19021 1.19644 0.91629 0.85040 1.41126 0.90129 1.42528 1.05596 1.01011 1.89528 1.21062 0.93330 0.83722 0.99600 1.20704 0.89454 0.93729 0.88704 0.91270 1.45809 1.13902 1.53215 1.20884 1.16696 0.80869 0.78779 0.84232 1.90704 1.76487 1.43145 1.32305 1.23013 0.98423 1.06735 0.95312 1.25588 0.92275 0.97773 0.95119 1.77942 1.13498 1.12084 1.08051 1.48549 1.06528 1.36935 1.13247 1.17892 0.98628 1.00758 0.80120 1.21128 0.95485 1.01428 0.95578 1.21481 1.00672 0.95808 0.93424 1.21800 0.92105 0.97095 1.01370 1.21427 0.99937 0.98267 0.92238 1.21143 0.97745 0.98134 0.97810 1.73749 1.13979 1.15475 1.02202 1.22554 1.01897 0.89924 1.04508 1.22993 1.02635 1.02048 0.91859 1.23221 0.99572 0.97473 1.01773 0.94259 0.79534 0.94385 0.93840 0.75639 0.73775 0.84102 0.81345 0.81483 0.82442 0.85593 0.86246 0.89519 0.86570 0.87954 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.74 -37.56 5.43 -343.45 -1.87 -39.42 16 10 C 0.15 5.81 5.80 86.38 0.50 6.31 16 11 C 0.18 6.10 2.43 44.99 0.11 6.21 16 12 H 0.07 2.68 7.33 -2.39 -0.02 2.66 16 13 N -0.69 -24.07 4.49 -445.50 -2.00 -26.08 16 14 C 0.61 21.51 7.16 86.76 0.62 22.13 16 15 O -0.55 -20.48 13.93 -3.92 -0.05 -20.53 16 16 C -0.07 -2.29 7.09 42.20 0.30 -1.99 16 17 C 0.08 2.32 11.91 85.36 1.02 3.34 16 18 N -0.29 -8.44 11.90 -56.32 -0.67 -9.11 16 19 N -0.16 -4.99 4.44 -51.14 -0.23 -5.21 16 20 C 0.12 3.09 6.74 38.11 0.26 3.35 16 21 C -0.12 -2.36 9.65 22.39 0.22 -2.14 16 22 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 23 C -0.11 -1.30 10.04 22.29 0.22 -1.08 16 24 C -0.10 -1.69 10.04 22.25 0.22 -1.46 16 25 C -0.13 -3.10 9.61 22.39 0.22 -2.88 16 26 N -0.21 -7.09 10.95 -48.60 -0.53 -7.62 16 27 C -0.17 -4.60 5.36 -10.79 -0.06 -4.66 16 28 C -0.16 -3.81 10.18 30.62 0.31 -3.49 16 29 C -0.18 -4.78 9.74 30.62 0.30 -4.48 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 31 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.41 14.58 8.30 -92.71 -0.77 13.81 16 35 H 0.25 5.02 8.06 -2.91 -0.02 4.99 16 36 H 0.14 2.76 7.67 -2.91 -0.02 2.74 16 37 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.13 3.41 7.67 -2.91 -0.02 3.39 16 41 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 42 H 0.09 2.26 8.05 -2.39 -0.02 2.24 16 43 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 2.99 5.02 -2.39 -0.01 2.98 16 Total: -1.00 -72.44 386.79 2.31 -70.12 By element: Atomic # 1 Polarization: 48.34 SS G_CDS: -0.41 Total: 47.93 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.76 Total: 1.76 kcal Atomic # 7 Polarization: -142.45 SS G_CDS: -5.02 Total: -147.47 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.44 2.31 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670549317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.238 kcal (2) G-P(sol) polarization free energy of solvation -72.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds