Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48500 * 109.47147 * 269.99658 * 3 2 1 5 5 H 1.48496 * 109.47376 * 29.99774 * 3 2 1 6 6 H 1.48503 * 109.46934 * 150.00139 * 3 2 1 7 7 C 1.38810 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99872 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99722 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61436 * 174.99877 * 11 10 9 13 13 C 1.53785 * 87.08458 * 139.97924 * 12 11 10 14 14 N 1.46503 * 113.61441 * 89.11269 * 13 12 11 15 15 C 1.34772 * 119.99895 * 156.53377 * 14 13 12 16 16 O 1.21612 * 120.00120 * 359.97438 * 15 14 13 17 17 C 1.47408 * 120.00183 * 179.97438 * 15 14 13 18 18 C 1.41339 * 126.40660 * 0.02562 * 17 15 14 19 19 N 1.30483 * 108.06412 * 179.97438 * 18 17 15 20 20 N 1.39942 * 108.91497 * 359.74666 * 19 18 17 21 21 C 1.40167 * 125.76938 * 180.26784 * 20 19 18 22 22 C 1.39264 * 120.48546 * 0.18613 * 21 20 19 23 23 C 1.38514 * 118.36238 * 179.97438 * 22 21 20 24 24 C 1.38270 * 119.23111 * 0.02562 * 23 22 21 25 25 N 1.31860 * 120.91274 * 0.02562 * 24 23 22 26 26 C 1.31817 * 121.79330 * 359.68235 * 25 24 23 27 27 C 1.34532 * 108.45716 * 0.43049 * 20 19 18 28 28 C 1.53788 * 87.16768 * 334.52543 * 13 12 11 29 29 H 0.96996 * 120.00283 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00516 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47705 * 59.99729 * 10 9 7 32 32 H 1.09007 * 109.47182 * 299.99132 * 10 9 7 33 33 H 1.08998 * 112.84896 * 43.79940 * 11 10 9 34 34 H 1.08999 * 113.61980 * 25.43239 * 12 11 10 35 35 H 1.09002 * 113.69165 * 254.53626 * 12 11 10 36 36 H 1.08995 * 113.61768 * 219.93477 * 13 12 11 37 37 H 0.97002 * 120.00170 * 336.53139 * 14 13 12 38 38 H 1.07992 * 125.96959 * 0.02562 * 18 17 15 39 39 H 1.08002 * 120.82190 * 359.95436 * 22 21 20 40 40 H 1.08001 * 120.38282 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.54564 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.66985 * 180.28937 * 26 25 24 43 43 H 1.08002 * 126.31165 * 179.84928 * 27 20 19 44 44 H 1.09008 * 113.61141 * 140.02169 * 28 13 12 45 45 H 1.09002 * 113.61156 * 270.91992 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1911 0.0011 12 6 6.4786 -3.4585 0.1239 13 6 7.4242 -2.8202 -0.9073 14 7 8.4709 -1.9887 -0.3080 15 6 9.6156 -1.7576 -0.9807 16 8 9.7799 -2.2397 -2.0851 17 6 10.6687 -0.9205 -0.3780 18 6 10.6216 -0.2967 0.8895 19 7 11.7399 0.3530 1.0624 20 7 12.5475 0.1746 -0.0665 21 6 13.8278 0.7141 -0.2515 22 6 14.4110 1.5042 0.7360 23 6 15.6783 2.0145 0.5073 24 6 16.3176 1.7256 -0.6842 25 7 15.7373 0.9747 -1.5996 26 6 14.5350 0.4650 -1.4197 27 6 11.8856 -0.5993 -0.9456 28 6 6.2119 -2.0179 -1.4091 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0421 -0.8891 32 1 3.8486 -3.0424 0.8909 33 1 5.9000 -1.4009 0.6963 34 1 5.9836 -4.3600 -0.2370 35 1 6.9291 -3.5880 1.1079 36 1 7.8131 -3.5276 -1.6397 37 1 8.3401 -1.6044 0.5730 38 1 9.8035 -0.3494 1.5924 39 1 13.8879 1.7143 1.6573 40 1 16.1614 2.6308 1.2511 41 1 17.3057 2.1211 -0.8679 42 1 14.0940 -0.1494 -2.1907 43 1 12.2424 -0.9152 -1.9148 44 1 6.4469 -0.9838 -1.6614 45 1 5.6441 -2.5263 -2.1884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674552012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = 123.332549 kcal Electronic energy + Delta-G solvation = -27467.855826 eV Core-core repulsion = 23488.584333 eV Total energy + Delta-G solvation = -3979.271493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32925 -40.63588 -39.99790 -38.21509 -34.82865 -34.65664 -33.20244 -32.94981 -31.23041 -30.87096 -30.02126 -27.28569 -25.59876 -25.13807 -24.61851 -23.45524 -22.58555 -21.66067 -21.31050 -20.48591 -19.22360 -19.14593 -17.70026 -17.50899 -17.02549 -16.42774 -16.20152 -16.09948 -15.50496 -14.99069 -14.90612 -14.67587 -14.41712 -14.36710 -14.16528 -13.88991 -13.79823 -13.41640 -13.34396 -12.83088 -12.64999 -12.46790 -12.30954 -11.79313 -11.74040 -11.44246 -11.36827 -10.89173 -10.64645 -10.43524 -10.32940 -10.26221 -10.18422 -10.09142 -9.87721 -9.78717 -9.56945 -9.14048 -8.87720 -8.82437 -7.20070 -5.75397 -3.10217 -0.07303 0.46261 1.29201 1.53856 1.68515 2.98261 3.07441 3.16383 3.37398 3.40684 3.45712 3.65590 3.73601 3.93966 4.17607 4.20996 4.33985 4.54282 4.60122 4.61920 4.68051 4.68442 4.72105 4.90609 5.00924 5.02053 5.13629 5.30037 5.37048 5.54578 5.64708 5.68103 5.70922 5.82092 5.84093 5.86372 5.96743 6.12100 6.13460 6.26792 6.30587 6.55510 6.69902 6.83520 6.86335 7.17258 7.36792 8.01674 8.07368 8.44024 9.23735 9.96272 10.16466 11.43198 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.001906 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.614664 B =14687.596349 C =15733.725384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.704 5.704 15 C 0.597 3.403 16 O -0.545 6.545 17 C -0.275 4.275 18 C 0.096 3.904 19 N -0.289 5.289 20 N -0.312 5.312 21 C 0.104 3.896 22 C -0.071 4.071 23 C -0.147 4.147 24 C 0.090 3.910 25 N -0.456 5.456 26 C 0.090 3.910 27 C 0.128 3.872 28 C -0.142 4.142 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.400 0.600 38 H 0.199 0.801 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.195 0.805 44 H 0.067 0.933 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.922 0.050 2.089 34.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.013 3.987 14 N -0.354 5.354 15 C 0.384 3.616 16 O -0.423 6.423 17 C -0.289 4.289 18 C -0.093 4.093 19 N -0.106 5.106 20 N -0.085 5.085 21 C 0.009 3.991 22 C -0.098 4.098 23 C -0.167 4.167 24 C -0.067 4.067 25 N -0.164 5.164 26 C -0.070 4.070 27 C -0.019 4.019 28 C -0.180 4.180 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.216 0.784 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.086 0.914 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 35.978 0.206 1.298 36.002 hybrid contribution -0.637 1.223 0.805 1.596 sum 35.342 1.429 2.103 35.433 Atomic orbital electron populations 1.69700 1.05097 1.25766 1.57769 1.24676 0.95241 0.97195 1.02178 0.86530 0.79117 0.84995 0.77755 1.21124 1.21800 1.20430 1.19085 0.80778 0.94710 1.42743 0.89256 1.42695 1.03956 1.02310 1.91116 1.20622 0.87712 0.89212 0.98524 1.22871 0.96439 0.97342 0.97147 1.23292 0.96588 0.98571 0.98972 1.21936 0.86739 0.93346 0.96645 1.45431 1.16377 1.52432 1.21141 1.17082 0.80806 0.79258 0.84469 1.90794 1.80061 1.51730 1.19707 1.20359 0.98081 1.12350 0.98079 1.24318 0.95933 0.93221 0.95834 1.77278 1.03784 1.24260 1.05299 1.45527 1.12051 1.37298 1.13583 1.18713 0.83305 0.99376 0.97675 1.21443 0.95119 0.94378 0.98881 1.22181 0.94674 1.00590 0.99241 1.22958 1.00191 0.94123 0.89426 1.67802 1.08865 1.08452 1.31285 1.22658 0.90954 0.98880 0.94544 1.23060 0.91562 0.91251 0.96005 1.23510 0.95906 1.00974 0.97635 0.93107 0.80743 0.95324 0.95574 0.89564 0.88429 0.91091 0.88061 0.76555 0.78388 0.83034 0.83438 0.81698 0.81833 0.78811 0.91424 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.58 13.97 55.49 0.78 -28.81 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 22.26 27.74 -169.99 -4.71 17.55 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -17.83 5.41 -59.91 -0.32 -18.16 16 10 C 0.17 3.09 6.10 -4.04 -0.02 3.06 16 11 C -0.12 -1.65 3.65 -89.67 -0.33 -1.97 16 12 C -0.14 -1.44 7.38 -25.92 -0.19 -1.63 16 13 C 0.12 1.34 4.30 -67.11 -0.29 1.05 16 14 N -0.70 -7.09 5.26 -54.09 -0.28 -7.38 16 15 C 0.60 6.93 7.81 -12.53 -0.10 6.84 16 16 O -0.54 -8.16 16.52 5.27 0.09 -8.07 16 17 C -0.27 -2.64 6.13 -105.05 -0.64 -3.28 16 18 C 0.10 0.79 11.50 -16.95 -0.19 0.60 16 19 N -0.29 -2.76 11.85 30.88 0.37 -2.39 16 20 N -0.31 -2.76 3.77 -10.11 -0.04 -2.80 16 21 C 0.10 0.80 6.70 -83.45 -0.56 0.24 16 22 C -0.07 -0.45 9.77 -39.10 -0.38 -0.84 16 23 C -0.15 -0.65 10.11 -39.47 -0.40 -1.04 16 24 C 0.09 0.46 11.18 -17.53 -0.20 0.27 16 25 N -0.46 -3.39 10.35 -13.09 -0.14 -3.52 16 26 C 0.09 0.63 10.62 -17.34 -0.18 0.44 16 27 C 0.13 1.11 10.62 -16.43 -0.17 0.93 16 28 C -0.14 -1.90 7.45 -25.77 -0.19 -2.09 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.36 8.30 5.53 -40.82 -0.23 8.08 16 31 H 0.03 0.54 7.85 -51.93 -0.41 0.14 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.40 3.08 7.66 -40.82 -0.31 2.76 16 38 H 0.20 0.99 7.50 -52.49 -0.39 0.60 16 39 H 0.15 0.92 7.77 -52.49 -0.41 0.52 16 40 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 41 H 0.17 0.37 8.06 -52.48 -0.42 -0.06 16 42 H 0.16 0.82 6.74 -52.48 -0.35 0.46 16 43 H 0.20 1.22 7.04 -52.49 -0.37 0.85 16 44 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -37.02 383.50 -8.42 -45.44 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.82 Total: 6.89 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.11 Total: -4.54 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.36 Total: -63.05 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.02 -8.42 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674552012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.772 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds