Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46994 * 269.99749 * 3 2 1 5 5 H 1.48501 * 109.47243 * 29.99907 * 3 2 1 6 6 H 1.48502 * 109.46986 * 150.00029 * 3 2 1 7 7 C 1.38816 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00119 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00053 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47454 * 180.02562 * 10 9 7 12 12 C 1.53777 * 113.61606 * 175.00209 * 11 10 9 13 13 C 1.53782 * 87.08341 * 139.97965 * 12 11 10 14 14 N 1.46506 * 113.61465 * 89.11309 * 13 12 11 15 15 C 1.34773 * 119.99968 * 156.52949 * 14 13 12 16 16 O 1.21588 * 120.00151 * 359.73123 * 15 14 13 17 17 C 1.47516 * 119.99824 * 180.02562 * 15 14 13 18 18 C 1.36615 * 125.76702 * 179.44215 * 17 15 14 19 19 N 1.35072 * 106.79446 * 179.89945 * 18 17 15 20 20 C 1.40226 * 126.61283 * 180.13074 * 19 18 17 21 21 C 1.38828 * 120.06723 * 359.97058 * 20 19 18 22 22 C 1.38123 * 119.93204 * 179.71983 * 21 20 19 23 23 C 1.38276 * 120.06752 * 0.56005 * 22 21 20 24 24 C 1.38278 * 120.13248 * 359.71733 * 23 22 21 25 25 C 1.38120 * 120.06221 * 0.02562 * 24 23 22 26 26 N 1.40209 * 106.77382 * 0.35847 * 19 18 17 27 27 N 1.28748 * 108.38850 * 359.76760 * 26 19 18 28 28 C 1.53787 * 87.17091 * 334.52857 * 13 12 11 29 29 H 0.96997 * 120.00107 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00402 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46972 * 60.00371 * 10 9 7 32 32 H 1.08996 * 109.47493 * 300.00298 * 10 9 7 33 33 H 1.08998 * 112.84936 * 43.80407 * 11 10 9 34 34 H 1.09003 * 113.61384 * 25.43665 * 12 11 10 35 35 H 1.08998 * 113.61881 * 254.52872 * 12 11 10 36 36 H 1.08997 * 113.61995 * 219.93907 * 13 12 11 37 37 H 0.96998 * 119.99507 * 336.53804 * 14 13 12 38 38 H 1.08005 * 126.60366 * 0.03804 * 18 17 15 39 39 H 1.08003 * 120.03304 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.96645 * 180.27847 * 22 21 20 41 41 H 1.08004 * 119.93499 * 179.74262 * 23 22 21 42 42 H 1.07996 * 119.96672 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.03248 * 180.02562 * 25 24 23 44 44 H 1.08997 * 113.61390 * 140.02122 * 28 13 12 45 45 H 1.09001 * 113.60902 * 270.92487 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.7305 -6.2000 -0.1229 13 6 0.7045 -6.7001 0.9078 14 7 -0.5387 -7.1907 0.3078 15 6 -1.3115 -8.0668 0.9800 16 8 -0.9744 -8.4536 2.0823 17 6 -2.5630 -8.5612 0.3756 18 6 -3.4260 -9.4545 0.9445 19 7 -4.4373 -9.6331 0.0672 20 6 -5.5531 -10.4656 0.2353 21 6 -5.6959 -11.2111 1.3977 22 6 -6.7990 -12.0257 1.5629 23 6 -7.7547 -12.1082 0.5670 24 6 -7.6124 -11.3713 -0.5944 25 6 -6.5141 -10.5508 -0.7630 26 7 -4.1536 -8.8297 -1.0463 27 7 -3.0440 -8.2134 -0.8304 28 6 0.6154 -5.2492 1.4097 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6847 -3.7145 0.8906 32 1 2.6847 -3.7146 -0.8894 33 1 0.2381 -4.6702 -0.6957 34 1 2.7586 -6.2221 0.2385 35 1 1.6170 -6.6538 -1.1074 36 1 1.1223 -7.3906 1.6403 37 1 -0.8056 -6.8852 -0.5733 38 1 -3.3210 -9.9254 1.9109 39 1 -4.9473 -11.1509 2.1739 40 1 -6.9129 -12.6025 2.4689 41 1 -8.6143 -12.7491 0.6967 42 1 -8.3606 -11.4374 -1.3703 43 1 -6.4036 -9.9752 -1.6701 44 1 -0.3977 -4.9357 1.6616 45 1 1.3393 -5.0117 2.1893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674558743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = 104.256140 kcal Electronic energy + Delta-G solvation = -27357.751928 eV Core-core repulsion = 23377.653220 eV Total energy + Delta-G solvation = -3980.098708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.62908 -41.19963 -40.23417 -39.34998 -36.34550 -35.82559 -34.42352 -32.87936 -32.51807 -31.79794 -30.78768 -28.54049 -26.61674 -25.94476 -25.35435 -24.89534 -23.55908 -22.84486 -22.51166 -21.58867 -20.29580 -19.93015 -19.04869 -18.10404 -17.41298 -17.19449 -17.06342 -16.71235 -16.35872 -16.08194 -15.98879 -15.70254 -15.56393 -15.19476 -15.06436 -14.90114 -14.52279 -14.46362 -14.14368 -13.72466 -13.54388 -13.35660 -13.11787 -12.90295 -12.88799 -12.69786 -12.47785 -12.36913 -12.17498 -12.09889 -11.92118 -11.76691 -11.36619 -11.32571 -11.13896 -10.84681 -10.75490 -10.10373 -10.09469 -9.60204 -8.97045 -7.94175 -5.22702 -0.67738 0.25648 0.40050 0.70257 0.80237 1.46761 1.49151 1.57596 1.96444 2.08095 2.56758 2.67829 2.96868 3.17558 3.38690 3.57903 3.60147 3.62311 3.69601 3.83550 3.94468 3.96790 3.98605 4.17012 4.29897 4.34293 4.35169 4.48634 4.55498 4.60742 4.77225 4.87369 4.88742 4.94054 4.95102 5.00130 5.16941 5.20493 5.26519 5.27565 5.35364 5.42780 5.44759 5.49506 5.65161 5.86928 6.28222 6.31620 6.68346 7.01070 7.33890 8.12576 8.34627 9.29591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.001734 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.664111 B =16143.666214 C =17013.361179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.127 3.873 14 N -0.690 5.690 15 C 0.610 3.390 16 O -0.560 6.560 17 C -0.113 4.113 18 C 0.106 3.894 19 N -0.301 5.301 20 C 0.096 3.904 21 C -0.125 4.125 22 C -0.095 4.095 23 C -0.106 4.106 24 C -0.102 4.102 25 C -0.120 4.120 26 N -0.080 5.080 27 N -0.214 5.214 28 C -0.141 4.141 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.413 0.587 38 H 0.241 0.759 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.130 0.870 44 H 0.048 0.952 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -32.834 2.587 36.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.134 4.134 12 C -0.154 4.154 13 C 0.022 3.978 14 N -0.339 5.339 15 C 0.395 3.605 16 O -0.438 6.438 17 C -0.252 4.252 18 C -0.048 4.048 19 N -0.079 5.079 20 C 0.006 3.994 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.140 4.140 26 N -0.059 5.059 27 N -0.087 5.087 28 C -0.180 4.180 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.250 0.750 38 H 0.257 0.743 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.148 0.852 44 H 0.067 0.933 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.859 -32.521 1.965 35.808 hybrid contribution 0.091 1.415 0.262 1.442 sum -14.767 -31.106 2.227 34.505 Atomic orbital electron populations 1.69833 1.06714 1.25992 1.59731 1.25611 0.96419 1.01259 1.03867 0.85105 0.77699 0.79309 0.77450 1.21353 1.22267 1.19276 1.19698 0.91587 0.85517 1.40936 0.90526 1.42602 1.05567 1.01366 1.89300 1.20834 0.93700 0.84399 0.97647 1.22745 0.98491 0.94605 0.97568 1.23237 0.99167 0.93218 0.99761 1.21886 0.84266 0.94745 0.96936 1.45489 1.22774 1.44108 1.21526 1.16765 0.81371 0.78376 0.83994 1.90785 1.72822 1.60026 1.20202 1.21476 1.01686 1.07175 0.94836 1.23841 0.86243 0.96653 0.98085 1.47796 1.16366 1.30232 1.13504 1.18049 0.86842 0.95710 0.98818 1.21309 1.01036 0.96833 0.95340 1.21481 0.92097 0.97150 1.00650 1.21816 0.99852 0.98168 0.92633 1.21441 0.96558 0.94798 0.99216 1.21124 0.94060 1.00469 0.98357 1.82024 1.10979 1.06703 1.06193 1.74646 1.03704 1.16085 1.14286 1.23475 1.01377 0.95775 0.97331 0.94109 0.79696 0.95708 0.96086 0.90382 0.86740 0.89396 0.87381 0.75049 0.74299 0.82915 0.81581 0.82042 0.82567 0.85242 0.93270 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.57 13.06 21.65 0.28 -61.28 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -39.39 5.60 -343.46 -1.92 -41.32 16 10 C 0.16 6.47 6.10 86.38 0.53 7.00 16 11 C -0.12 -3.68 3.65 -10.18 -0.04 -3.72 16 12 C -0.12 -2.68 7.38 31.12 0.23 -2.45 16 13 C 0.13 3.20 4.30 45.52 0.20 3.39 16 14 N -0.69 -17.68 5.26 -443.21 -2.33 -20.01 16 15 C 0.61 16.53 7.82 86.69 0.68 17.21 16 16 O -0.56 -17.15 16.48 -3.99 -0.07 -17.22 16 17 C -0.11 -2.79 6.99 40.82 0.29 -2.50 16 18 C 0.11 1.99 10.60 83.81 0.89 2.88 16 19 N -0.30 -6.00 3.82 -186.89 -0.71 -6.72 16 20 C 0.10 1.44 6.70 38.08 0.25 1.69 16 21 C -0.12 -1.09 9.47 22.38 0.21 -0.88 16 22 C -0.10 -0.44 10.04 22.25 0.22 -0.22 16 23 C -0.11 -0.46 10.04 22.29 0.22 -0.23 16 24 C -0.10 -0.76 10.04 22.25 0.22 -0.54 16 25 C -0.12 -1.63 9.68 22.38 0.22 -1.41 16 26 N -0.08 -2.07 13.12 37.02 0.49 -1.58 16 27 N -0.21 -5.85 12.03 -49.98 -0.60 -6.45 16 28 C -0.14 -4.32 7.45 31.21 0.23 -4.09 16 29 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.37 21.06 7.67 -92.71 -0.71 20.34 16 31 H 0.03 0.99 7.85 -2.38 -0.02 0.97 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.67 7.50 -2.39 -0.02 2.65 16 37 H 0.41 10.16 8.39 -92.71 -0.78 9.38 16 38 H 0.24 2.56 7.13 -2.91 -0.02 2.54 16 39 H 0.15 0.70 6.81 -2.91 -0.02 0.68 16 40 H 0.17 -0.18 8.06 -2.91 -0.02 -0.21 16 41 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 43 H 0.13 1.99 7.73 -2.91 -0.02 1.96 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 2.83 7.90 -2.39 -0.02 2.81 16 Total: -1.00 -77.90 387.94 2.37 -75.53 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.45 Total: 31.10 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.66 Total: -1.47 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -4.80 Total: -137.35 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.07 Total: -17.22 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -77.90 2.37 -75.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674558743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.784 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds