Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00307 * 2 1 4 4 H 1.48497 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46723 * 299.99920 * 3 2 1 6 6 H 1.48507 * 109.46784 * 59.99557 * 3 2 1 7 7 C 1.38801 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00501 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99890 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00368 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99871 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00061 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47341 * 184.96170 * 14 13 11 16 16 H 1.09007 * 112.73820 * 45.08592 * 15 14 13 17 17 C 1.53491 * 113.52334 * 274.29575 * 15 14 13 18 18 C 1.53758 * 83.25954 * 218.97396 * 17 15 14 19 19 N 1.47066 * 87.88776 * 26.23640 * 18 17 15 20 20 C 1.34773 * 136.06333 * 152.97125 * 19 18 17 21 21 O 1.21282 * 120.00903 * 174.59406 * 20 19 18 22 22 C 1.50705 * 119.99315 * 354.58526 * 20 19 18 23 23 N 1.46906 * 109.46883 * 180.02562 * 22 20 19 24 24 C 1.47844 * 110.99661 * 69.16253 * 23 22 20 25 25 C 1.54910 * 104.79579 * 146.36394 * 24 23 22 26 26 C 1.55140 * 101.64948 * 322.92714 * 25 24 23 27 27 C 1.47442 * 110.99875 * 190.00242 * 23 22 20 28 28 H 0.97001 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47155 * 59.99458 * 10 9 7 30 30 H 1.09002 * 109.46860 * 300.00049 * 10 9 7 31 31 H 0.97003 * 120.00368 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47099 * 64.96288 * 14 13 11 33 33 H 1.09001 * 109.47084 * 304.96545 * 14 13 11 34 34 H 1.08999 * 114.20500 * 332.72689 * 17 15 14 35 35 H 1.08992 * 114.21318 * 105.55134 * 17 15 14 36 36 H 1.09003 * 113.46523 * 271.50244 * 18 17 15 37 37 H 1.08997 * 113.55238 * 140.98420 * 18 17 15 38 38 H 1.09007 * 109.46986 * 60.00639 * 22 20 19 39 39 H 1.08996 * 109.47856 * 300.00408 * 22 20 19 40 40 H 1.08998 * 110.37586 * 27.53031 * 24 23 22 41 41 H 1.09006 * 110.37200 * 265.18847 * 24 23 22 42 42 H 1.08995 * 110.99036 * 204.83805 * 25 24 23 43 43 H 1.09001 * 110.99029 * 81.01936 * 25 24 23 44 44 H 1.09004 * 110.70463 * 154.04008 * 26 25 24 45 45 H 1.09000 * 110.70872 * 277.27062 * 26 25 24 46 46 H 1.09000 * 109.88838 * 117.34121 * 27 23 22 47 47 H 1.09003 * 109.89254 * 356.14693 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7909 -5.5023 0.0009 13 7 2.8440 -6.3432 0.0022 14 6 2.3302 -7.7151 0.0024 15 6 3.4971 -8.6967 0.1277 16 1 4.2160 -8.4012 0.8920 17 6 4.1461 -9.0518 -1.2172 18 6 4.2301 -10.4574 -0.5995 19 7 3.0726 -10.1007 0.2346 20 6 2.0682 -10.7675 0.8370 21 8 1.2942 -10.1754 1.5591 22 6 1.9066 -12.2491 0.6131 23 7 0.7476 -12.7356 1.3735 24 6 -0.5149 -12.2204 0.8023 25 6 -1.5444 -13.3553 1.0300 26 6 -0.6750 -14.6186 0.7954 27 6 0.6962 -14.2092 1.3730 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7310 0.8925 30 1 3.1250 -3.7318 -0.8875 31 1 3.8008 -6.1836 0.0032 32 1 1.7958 -7.9031 -0.9288 33 1 1.6510 -7.8487 0.8444 34 1 3.4739 -8.9752 -2.0718 35 1 5.1146 -8.5808 -1.3844 36 1 5.1422 -10.6261 -0.0270 37 1 4.0232 -11.2582 -1.3094 38 1 2.8051 -12.7673 0.9484 39 1 1.7510 -12.4414 -0.4484 40 1 -0.3968 -12.0232 -0.2632 41 1 -0.8261 -11.3154 1.3243 42 1 -2.3550 -13.2987 0.3034 43 1 -1.9325 -13.3319 2.0483 44 1 -1.0820 -15.4725 1.3370 45 1 -0.5945 -14.8389 -0.2691 46 1 0.7963 -14.5840 2.3916 47 1 1.4956 -14.6080 0.7485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = -21.032567 kcal Electronic energy + Delta-G solvation = -26686.835538 eV Core-core repulsion = 22804.455104 eV Total energy + Delta-G solvation = -3882.380434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97801 -39.49054 -38.85191 -37.64406 -34.40949 -32.68153 -32.40636 -30.56618 -29.85108 -29.24998 -27.73960 -26.62722 -25.45358 -23.36650 -22.52271 -21.51551 -21.12010 -20.46718 -19.15766 -17.89481 -17.48956 -16.76902 -16.63414 -16.16134 -15.98020 -15.44823 -15.18745 -15.10864 -14.79926 -14.77051 -14.00452 -13.91399 -13.81509 -13.76354 -13.29909 -13.06120 -12.91826 -12.86332 -12.53097 -12.39991 -12.35476 -11.94865 -11.86195 -11.69778 -11.60951 -11.40054 -11.05595 -11.04948 -10.99694 -10.94721 -10.72776 -9.92055 -9.78397 -9.37456 -9.07620 -9.05616 -8.85154 -8.67560 -8.19630 -6.47126 -6.19392 -3.89716 2.24550 2.40893 3.10392 3.15048 3.23116 3.30291 3.35543 3.56482 3.79853 3.86350 4.06115 4.22366 4.26486 4.36655 4.45638 4.56478 4.59187 4.75623 4.81048 4.84417 4.91162 4.93747 4.95211 5.12388 5.15696 5.20494 5.21009 5.31487 5.34436 5.41575 5.51291 5.57376 5.60114 5.67383 5.79297 5.84905 5.91366 5.92900 6.05574 6.16161 6.53957 6.57025 6.62159 7.39755 7.61944 7.72424 7.96307 8.37632 8.66002 9.25838 10.88098 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.001843 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.606471 B =15188.341575 C =16268.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.117 3.883 15 C 0.125 3.875 16 H 0.099 0.901 17 C -0.152 4.152 18 C 0.100 3.900 19 N -0.648 5.648 20 C 0.539 3.461 21 O -0.506 6.506 22 C 0.041 3.959 23 N -0.515 5.515 24 C 0.044 3.956 25 C -0.131 4.131 26 C -0.143 4.143 27 C 0.042 3.958 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.445 -31.358 -2.716 33.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.008 4.008 15 C 0.022 3.978 16 H 0.117 0.883 17 C -0.189 4.189 18 C -0.023 4.023 19 N -0.387 5.387 20 C 0.328 3.672 21 O -0.379 6.379 22 C -0.090 4.090 23 N -0.239 5.239 24 C -0.083 4.083 25 C -0.169 4.169 26 C -0.182 4.182 27 C -0.085 4.085 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.687 -31.238 -1.683 32.214 hybrid contribution 2.543 0.974 -0.808 2.841 sum 10.230 -30.263 -2.491 32.042 Atomic orbital electron populations 1.70032 1.05955 1.27322 1.46947 1.25001 0.95028 0.99043 0.94587 0.86111 0.79558 0.81897 0.77881 1.19630 1.20593 1.20574 1.22913 0.94941 0.91655 1.58794 0.90863 1.85453 1.04947 0.96315 1.96699 1.23519 1.06548 0.95266 1.04921 1.20308 0.86522 0.86195 0.75229 1.90722 1.15386 1.85507 1.47125 1.45833 1.09857 1.05167 1.78323 1.21402 0.95549 0.80387 1.03484 1.22849 0.95310 0.82752 0.96929 0.88339 1.23637 1.02474 0.95901 0.96919 1.23015 0.88631 0.98407 0.92288 1.49752 1.26349 1.09133 1.53440 1.20144 0.79788 0.88696 0.78577 1.90769 1.42951 1.69042 1.35149 1.22095 0.96486 0.92788 0.97635 1.63310 1.01759 1.07249 1.51602 1.23143 0.88248 0.99121 0.97751 1.22740 0.97594 0.93865 1.02703 1.22790 0.95675 0.98675 1.01015 1.22861 0.96960 0.87140 1.01542 0.92246 0.89187 0.89191 0.76935 0.91510 0.89785 0.88206 0.88735 0.89432 0.90256 0.88130 0.91873 0.93903 0.88728 0.90674 0.90395 0.90549 0.91530 0.90072 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 10.33 7.85 -10.99 -0.09 10.24 16 12 O -0.51 -12.41 15.86 5.55 0.09 -12.32 16 13 N -0.74 -10.10 5.55 -60.29 -0.33 -10.44 16 14 C 0.12 1.54 5.47 -4.04 -0.02 1.52 16 15 C 0.13 1.09 4.06 -72.40 -0.29 0.80 16 16 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.15 -0.79 8.03 -26.08 -0.21 -1.00 16 18 C 0.10 0.45 8.43 -8.37 -0.07 0.38 16 19 N -0.65 -5.78 3.56 -177.28 -0.63 -6.41 16 20 C 0.54 6.19 7.75 -10.98 -0.09 6.11 16 21 O -0.51 -8.22 14.64 5.56 0.08 -8.14 16 22 C 0.04 0.34 4.89 -4.97 -0.02 0.31 16 23 N -0.51 -4.99 4.86 -232.68 -1.13 -6.12 16 24 C 0.04 0.45 5.74 -2.30 -0.01 0.44 16 25 C -0.13 -1.00 7.08 -24.59 -0.17 -1.17 16 26 C -0.14 -0.86 6.94 -24.91 -0.17 -1.03 16 27 C 0.04 0.29 6.87 -2.84 -0.02 0.27 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.40 3.93 8.48 -40.82 -0.35 3.59 16 32 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.08 1.45 7.14 -51.93 -0.37 1.08 16 34 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.06 0.42 7.85 -51.93 -0.41 0.01 16 40 H 0.04 0.42 7.62 -51.93 -0.40 0.02 16 41 H 0.09 1.22 7.38 -51.93 -0.38 0.84 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.29 7.55 -51.93 -0.39 -0.11 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -38.80 398.97 -10.90 -49.70 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.73 Total: -0.06 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.75 Total: 0.87 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -1.36 Total: -48.72 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.17 Total: -20.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.80 -10.90 -49.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds