Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00307 * 2 1 4 4 H 1.48497 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46723 * 299.99920 * 3 2 1 6 6 H 1.48507 * 109.46784 * 59.99557 * 3 2 1 7 7 C 1.38801 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00501 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99890 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00368 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99871 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00061 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47341 * 184.96170 * 14 13 11 16 16 H 1.09007 * 112.73820 * 45.08592 * 15 14 13 17 17 C 1.53491 * 113.52334 * 274.29575 * 15 14 13 18 18 C 1.53758 * 83.25954 * 218.97396 * 17 15 14 19 19 N 1.47066 * 87.88776 * 26.23640 * 18 17 15 20 20 C 1.34773 * 136.06333 * 152.97125 * 19 18 17 21 21 O 1.21282 * 120.00903 * 174.59406 * 20 19 18 22 22 C 1.50705 * 119.99315 * 354.58526 * 20 19 18 23 23 N 1.46906 * 109.46883 * 180.02562 * 22 20 19 24 24 C 1.47844 * 110.99661 * 69.16253 * 23 22 20 25 25 C 1.54910 * 104.79579 * 146.36394 * 24 23 22 26 26 C 1.55140 * 101.64948 * 322.92714 * 25 24 23 27 27 C 1.47442 * 110.99875 * 190.00242 * 23 22 20 28 28 H 0.97001 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47155 * 59.99458 * 10 9 7 30 30 H 1.09002 * 109.46860 * 300.00049 * 10 9 7 31 31 H 0.97003 * 120.00368 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47099 * 64.96288 * 14 13 11 33 33 H 1.09001 * 109.47084 * 304.96545 * 14 13 11 34 34 H 1.08999 * 114.20500 * 332.72689 * 17 15 14 35 35 H 1.08992 * 114.21318 * 105.55134 * 17 15 14 36 36 H 1.09003 * 113.46523 * 271.50244 * 18 17 15 37 37 H 1.08997 * 113.55238 * 140.98420 * 18 17 15 38 38 H 1.09007 * 109.46986 * 60.00639 * 22 20 19 39 39 H 1.08996 * 109.47856 * 300.00408 * 22 20 19 40 40 H 1.08998 * 110.37586 * 27.53031 * 24 23 22 41 41 H 1.09006 * 110.37200 * 265.18847 * 24 23 22 42 42 H 1.08995 * 110.99036 * 204.83805 * 25 24 23 43 43 H 1.09001 * 110.99029 * 81.01936 * 25 24 23 44 44 H 1.09004 * 110.70463 * 154.04008 * 26 25 24 45 45 H 1.09000 * 110.70872 * 277.27062 * 26 25 24 46 46 H 1.09000 * 109.88838 * 117.34121 * 27 23 22 47 47 H 1.09003 * 109.89254 * 356.14693 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7909 -5.5023 0.0009 13 7 2.8440 -6.3432 0.0022 14 6 2.3302 -7.7151 0.0024 15 6 3.4971 -8.6967 0.1277 16 1 4.2160 -8.4012 0.8920 17 6 4.1461 -9.0518 -1.2172 18 6 4.2301 -10.4574 -0.5995 19 7 3.0726 -10.1007 0.2346 20 6 2.0682 -10.7675 0.8370 21 8 1.2942 -10.1754 1.5591 22 6 1.9066 -12.2491 0.6131 23 7 0.7476 -12.7356 1.3735 24 6 -0.5149 -12.2204 0.8023 25 6 -1.5444 -13.3553 1.0300 26 6 -0.6750 -14.6186 0.7954 27 6 0.6962 -14.2092 1.3730 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7310 0.8925 30 1 3.1250 -3.7318 -0.8875 31 1 3.8008 -6.1836 0.0032 32 1 1.7958 -7.9031 -0.9288 33 1 1.6510 -7.8487 0.8444 34 1 3.4739 -8.9752 -2.0718 35 1 5.1146 -8.5808 -1.3844 36 1 5.1422 -10.6261 -0.0270 37 1 4.0232 -11.2582 -1.3094 38 1 2.8051 -12.7673 0.9484 39 1 1.7510 -12.4414 -0.4484 40 1 -0.3968 -12.0232 -0.2632 41 1 -0.8261 -11.3154 1.3243 42 1 -2.3550 -13.2987 0.3034 43 1 -1.9325 -13.3319 2.0483 44 1 -1.0820 -15.4725 1.3370 45 1 -0.5945 -14.8389 -0.2691 46 1 0.7963 -14.5840 2.3916 47 1 1.4956 -14.6080 0.7485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -51.908398 kcal Electronic energy + Delta-G solvation = -26688.174414 eV Core-core repulsion = 22804.455104 eV Total energy + Delta-G solvation = -3883.719310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71525 -40.58285 -39.93140 -38.47928 -35.78333 -34.58936 -33.35763 -31.75604 -30.84371 -29.86717 -28.82402 -27.65725 -27.28109 -24.14581 -23.16376 -22.12512 -21.96300 -21.70903 -20.09914 -19.67775 -18.27311 -17.88321 -17.72082 -17.24160 -16.88822 -16.75756 -16.66567 -16.25759 -15.99638 -15.77821 -15.44322 -14.93901 -14.73275 -14.60671 -14.47610 -14.41193 -13.95081 -13.64505 -13.50706 -13.47439 -13.16686 -13.02061 -12.96182 -12.89778 -12.60305 -12.46967 -12.42164 -12.15322 -12.04318 -11.75726 -11.63080 -11.60493 -11.16361 -11.05037 -10.75481 -10.27548 -10.21407 -9.78121 -9.32961 -8.68737 -8.34971 -6.13974 1.23322 1.41921 1.43410 1.55382 1.55921 1.58677 1.68309 2.26564 2.33324 2.96410 2.99331 3.29749 3.31591 3.50568 3.70556 3.71559 3.78014 3.96404 3.98247 4.02317 4.06825 4.24256 4.28022 4.29420 4.30340 4.47451 4.48886 4.51867 4.57455 4.66987 4.67962 4.70824 4.91319 4.93635 4.95441 5.00481 5.01324 5.14150 5.25773 5.30987 5.35810 5.41894 5.87859 6.00146 6.19914 6.45645 6.71692 7.06063 7.16152 7.21550 8.74717 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.001843 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.606471 B =15188.341575 C =16268.244831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.118 3.882 16 H 0.116 0.884 17 C -0.136 4.136 18 C 0.106 3.894 19 N -0.653 5.653 20 C 0.527 3.473 21 O -0.572 6.572 22 C 0.048 3.952 23 N -0.542 5.542 24 C 0.047 3.953 25 C -0.130 4.130 26 C -0.135 4.135 27 C 0.042 3.958 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.421 0.579 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.840 -33.042 -4.014 36.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.067 5.933 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.002 4.002 15 C 0.014 3.986 16 H 0.134 0.866 17 C -0.174 4.174 18 C -0.015 4.015 19 N -0.391 5.391 20 C 0.317 3.683 21 O -0.450 6.450 22 C -0.083 4.083 23 N -0.267 5.267 24 C -0.081 4.081 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.259 0.741 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.196 -32.975 -3.014 35.287 hybrid contribution 1.228 1.414 -0.399 1.915 sum 13.424 -31.561 -3.414 34.467 Atomic orbital electron populations 1.70207 1.08109 1.28551 1.48121 1.26191 0.95986 1.03507 0.93736 0.84855 0.78674 0.76073 0.78010 1.17731 1.19901 1.20087 1.23244 0.95428 0.91704 1.58726 0.89559 1.85719 1.10925 0.99620 1.97075 1.23340 1.03440 0.93556 1.07233 1.20229 0.86163 0.86955 0.74961 1.90713 1.17923 1.86180 1.50107 1.45465 1.10477 1.04287 1.75703 1.21350 0.97129 0.80878 1.00811 1.23086 0.93605 0.81678 1.00216 0.86603 1.23627 1.03220 0.96318 0.94192 1.23323 0.87581 0.98652 0.91924 1.49987 1.26876 1.09352 1.52839 1.20900 0.79527 0.90085 0.77794 1.90748 1.45444 1.70518 1.38274 1.22142 0.96940 0.90503 0.98672 1.63182 1.01793 1.09152 1.52572 1.22962 0.89784 0.98432 0.96918 1.22731 0.97572 0.94117 1.02437 1.22775 0.94693 0.97876 1.01942 1.22927 0.98199 0.85231 1.02121 0.92030 0.86952 0.86400 0.74055 0.92771 0.94500 0.88991 0.85462 0.86699 0.87927 0.85378 0.89867 0.94006 0.93097 0.89871 0.91307 0.89152 0.90333 0.90226 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.21 13.22 21.65 0.29 -56.92 16 2 C 0.01 0.59 5.49 84.86 0.47 1.06 16 3 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 4 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.38 9.50 67.95 0.65 -30.73 16 8 H 0.09 4.58 7.80 -2.91 -0.02 4.55 16 9 S -0.16 -9.19 20.57 -56.49 -1.16 -10.35 16 10 C -0.12 -5.02 6.16 71.23 0.44 -4.58 16 11 C 0.53 20.92 7.85 87.65 0.69 21.61 16 12 O -0.57 -29.17 15.86 -3.04 -0.05 -29.22 16 13 N -0.70 -18.77 5.55 -463.06 -2.57 -21.34 16 14 C 0.12 3.36 5.47 86.38 0.47 3.83 16 15 C 0.12 1.85 4.06 41.79 0.17 2.02 16 16 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 17 C -0.14 -0.90 8.03 31.01 0.25 -0.65 16 18 C 0.11 0.50 8.43 83.27 0.70 1.20 16 19 N -0.65 -10.66 3.56 -833.17 -2.97 -13.63 16 20 C 0.53 12.26 7.75 87.66 0.68 12.94 16 21 O -0.57 -20.26 14.64 -3.04 -0.04 -20.30 16 22 C 0.05 0.72 4.89 85.56 0.42 1.14 16 23 N -0.54 -10.50 4.86 -890.06 -4.33 -14.83 16 24 C 0.05 1.02 5.74 86.77 0.50 1.52 16 25 C -0.13 -2.05 7.08 31.98 0.23 -1.83 16 26 C -0.13 -1.40 6.94 31.77 0.22 -1.18 16 27 C 0.04 0.50 6.87 86.65 0.59 1.09 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 30 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 31 H 0.42 7.15 8.48 -92.71 -0.79 6.36 16 32 H 0.05 1.60 7.90 -2.39 -0.02 1.59 16 33 H 0.04 1.38 7.14 -2.39 -0.02 1.37 16 34 H 0.09 0.82 7.95 -2.39 -0.02 0.80 16 35 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.13 1.17 8.03 -2.38 -0.02 1.15 16 39 H 0.08 0.91 7.85 -2.39 -0.02 0.89 16 40 H 0.04 0.87 7.62 -2.39 -0.02 0.85 16 41 H 0.05 1.53 7.38 -2.38 -0.02 1.51 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.08 0.56 7.55 -2.39 -0.02 0.54 16 Total: -1.00 -93.80 398.97 -2.16 -95.96 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.18 Total: 17.18 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.47 Total: 7.44 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -9.58 Total: -106.72 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.09 Total: -49.52 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.16 Total: -10.35 kcal Total: -93.80 -2.16 -95.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -93.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds