Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99941 * 2 1 4 4 H 1.48509 * 109.47037 * 269.99639 * 3 2 1 5 5 H 1.48499 * 109.47408 * 29.99085 * 3 2 1 6 6 H 1.48494 * 109.47463 * 149.99639 * 3 2 1 7 7 C 1.38794 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00152 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34767 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.65203 * 359.96817 * 13 11 10 15 15 C 1.54322 * 107.27494 * 181.10522 * 14 13 11 16 16 C 1.55162 * 102.93862 * 22.19832 * 15 14 13 17 17 H 1.09002 * 111.00840 * 82.60893 * 16 15 14 18 18 C 1.52999 * 111.00227 * 206.42220 * 16 15 14 19 19 N 1.46903 * 109.47113 * 184.99903 * 18 16 15 20 20 C 1.46903 * 110.99849 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.40055 * 35.00111 * 20 19 18 22 22 C 1.53068 * 109.40036 * 154.82969 * 20 19 18 23 23 C 1.53337 * 108.42929 * 168.94379 * 22 20 19 24 24 C 1.52923 * 108.67551 * 292.46903 * 23 22 20 25 25 N 1.45761 * 110.48732 * 50.74986 * 24 23 22 26 26 C 1.33182 * 124.05395 * 340.95575 * 25 24 23 27 27 O 1.21283 * 118.11795 * 182.18461 * 26 25 24 28 28 C 1.47432 * 125.64953 * 180.02562 * 13 11 10 29 29 H 0.96994 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47063 * 59.99826 * 10 9 7 31 31 H 1.09000 * 109.47011 * 300.00031 * 10 9 7 32 32 H 1.09005 * 109.87421 * 61.69174 * 14 13 11 33 33 H 1.08992 * 110.01417 * 300.60204 * 14 13 11 34 34 H 1.08991 * 110.72353 * 263.83369 * 15 14 13 35 35 H 1.08999 * 110.86895 * 140.62479 * 15 14 13 36 36 H 1.09003 * 109.47210 * 64.99916 * 18 16 15 37 37 H 1.09003 * 109.47209 * 304.99902 * 18 16 15 38 38 H 1.00894 * 110.99859 * 303.95181 * 19 18 16 39 39 H 1.08998 * 109.67439 * 288.68097 * 22 20 19 40 40 H 1.09005 * 109.67701 * 49.20721 * 22 20 19 41 41 H 1.08999 * 109.60441 * 52.22325 * 23 22 20 42 42 H 1.09004 * 109.61078 * 172.71038 * 23 22 20 43 43 H 1.09004 * 109.30336 * 171.05783 * 24 23 22 44 44 H 1.08997 * 109.30324 * 290.64684 * 24 23 22 45 45 H 0.96998 * 117.95020 * 160.92217 * 25 24 23 46 46 H 1.09003 * 110.36218 * 36.98713 * 28 13 11 47 47 H 1.08992 * 110.36655 * 274.66337 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 4.3112 -6.2451 0.0007 15 6 4.8666 -7.6846 -0.0273 16 6 3.6848 -8.5017 -0.6132 17 1 3.6707 -8.4430 -1.7015 18 6 3.7399 -9.9576 -0.1461 19 7 2.6800 -10.7260 -0.8125 20 6 2.7028 -12.1321 -0.3878 21 1 2.9945 -12.1889 0.6609 22 6 1.3080 -12.7383 -0.5611 23 6 1.4138 -14.2574 -0.3812 24 6 2.2160 -14.8340 -1.5485 25 7 3.4673 -14.1055 -1.7168 26 6 3.6945 -12.8896 -1.2231 27 8 4.7620 -12.3659 -1.4624 28 6 2.4656 -7.7680 -0.0008 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7314 0.8905 31 1 3.1245 -3.7314 -0.8894 32 1 4.6483 -5.7352 0.9032 33 1 4.6489 -5.7002 -0.8808 34 1 5.1086 -8.0243 0.9796 35 1 5.7403 -7.7512 -0.6757 36 1 3.5945 -9.9987 0.9334 37 1 4.7110 -10.3836 -0.3985 38 1 1.7747 -10.3125 -0.6466 39 1 0.6329 -12.3261 0.1888 40 1 0.9309 -12.5123 -1.5586 41 1 1.9220 -14.4801 0.5570 42 1 0.4156 -14.6952 -0.3720 43 1 2.4340 -15.8838 -1.3522 44 1 1.6296 -14.7529 -2.4637 45 1 4.1784 -14.5333 -2.2190 46 1 1.5800 -7.9246 -0.6166 47 1 2.2869 -8.1137 1.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690695493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -72.887272 kcal Electronic energy + Delta-G solvation = -26822.444745 eV Core-core repulsion = 22937.815722 eV Total energy + Delta-G solvation = -3884.629022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81714 -39.78024 -37.62094 -36.89143 -35.94739 -32.98826 -32.40667 -31.55391 -29.69797 -29.46142 -27.91661 -25.54236 -24.98567 -24.36600 -23.12485 -22.37681 -20.55477 -19.55639 -19.24463 -17.76067 -17.65514 -17.10500 -16.55388 -16.35010 -16.16684 -15.23035 -15.14846 -14.84033 -14.77697 -14.58195 -14.42332 -14.11993 -13.97644 -13.80985 -13.60938 -13.34746 -12.83604 -12.59607 -12.56683 -12.27463 -12.18806 -12.02565 -11.83837 -11.74936 -11.58197 -11.06291 -11.04637 -11.00490 -10.92999 -10.83381 -10.73099 -10.17271 -9.78997 -9.49759 -9.36348 -9.04396 -8.80971 -8.44352 -8.20734 -6.47625 -6.19446 -3.89848 2.29507 2.83148 2.96576 3.11008 3.24087 3.28210 3.32368 3.63287 3.68139 4.02829 4.11449 4.22408 4.26780 4.32591 4.43015 4.48221 4.72148 4.75712 4.77635 4.98809 5.04228 5.12692 5.15401 5.16078 5.17394 5.22390 5.28237 5.32496 5.42427 5.55501 5.58958 5.62266 5.71329 5.75085 5.79802 5.88357 6.01242 6.12000 6.18435 6.34598 6.48356 6.53899 6.86605 7.02145 7.61844 7.73347 7.89819 8.37614 8.60422 9.25791 10.88035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001762 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.050242 B =15891.301289 C =16565.784668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.518 6.518 13 N -0.625 5.625 14 C 0.102 3.898 15 C -0.124 4.124 16 C -0.099 4.099 17 H 0.095 0.905 18 C 0.069 3.931 19 N -0.672 5.672 20 C 0.077 3.923 21 H 0.077 0.923 22 C -0.130 4.130 23 C -0.135 4.135 24 C 0.109 3.891 25 N -0.723 5.723 26 C 0.529 3.471 27 O -0.542 6.542 28 C 0.110 3.890 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.096 0.904 38 H 0.351 0.649 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.399 0.601 46 H 0.077 0.923 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -32.199 -0.157 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.021 4.021 15 C -0.162 4.162 16 C -0.119 4.119 17 H 0.114 0.886 18 C -0.060 4.060 19 N -0.306 5.306 20 C -0.036 4.036 21 H 0.095 0.905 22 C -0.168 4.168 23 C -0.173 4.173 24 C -0.016 4.016 25 N -0.376 5.376 26 C 0.314 3.686 27 O -0.418 6.418 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.171 0.829 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.234 0.766 46 H 0.096 0.904 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.291 -32.005 -0.700 32.625 hybrid contribution 1.850 1.101 0.691 2.260 sum 8.140 -30.904 -0.009 31.958 Atomic orbital electron populations 1.70023 1.05942 1.27417 1.46931 1.24992 0.95033 0.99012 0.94560 0.86164 0.79403 0.81558 0.78350 1.20266 1.20755 1.19705 1.22866 0.94913 0.91627 1.58864 0.90933 1.85376 1.05059 0.96337 1.96710 1.23507 1.06390 0.95020 1.04794 1.20016 0.85677 0.85494 0.75130 1.90699 1.14940 1.85186 1.48397 1.48480 1.06563 1.05649 1.75579 1.21984 0.80477 0.97512 1.02142 1.22636 0.97958 0.93652 1.01967 1.22408 0.94615 0.93121 1.01725 0.88631 1.22114 0.96839 0.91945 0.95076 1.60097 1.08654 0.99841 1.61990 1.21331 0.94780 0.90135 0.97363 0.90510 1.21899 0.95383 0.95252 1.04237 1.21856 1.01427 0.95526 0.98481 1.21402 0.85302 0.95870 0.98994 1.45458 1.17614 1.17919 1.56620 1.20042 0.88162 0.80808 0.79588 1.90714 1.26198 1.66089 1.58765 1.22240 0.97956 0.80898 1.00225 0.92208 0.89340 0.89299 0.91317 0.91213 0.90587 0.89733 0.94934 0.88573 0.82906 0.90195 0.89781 0.90846 0.89227 0.90486 0.91471 0.76555 0.90420 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -15.49 9.50 30.94 0.29 -15.19 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.12 5.35 36.01 0.19 -2.93 16 11 C 0.55 11.04 7.87 -10.99 -0.09 10.95 16 12 O -0.52 -12.35 16.12 5.55 0.09 -12.26 16 13 N -0.63 -9.53 3.33 -170.52 -0.57 -10.10 16 14 C 0.10 1.19 6.49 -3.06 -0.02 1.17 16 15 C -0.12 -1.12 6.42 -24.89 -0.16 -1.28 16 16 C -0.10 -0.99 3.25 -88.47 -0.29 -1.27 16 17 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 18 C 0.07 0.62 4.87 -3.82 -0.02 0.61 16 19 N -0.67 -5.77 6.20 -108.18 -0.67 -6.44 16 20 C 0.08 0.55 2.76 -69.08 -0.19 0.36 16 21 H 0.08 0.51 7.80 -51.93 -0.40 0.11 16 22 C -0.13 -0.58 5.29 -26.52 -0.14 -0.72 16 23 C -0.13 -0.36 6.02 -26.60 -0.16 -0.52 16 24 C 0.11 0.32 7.17 -4.48 -0.03 0.29 16 25 N -0.72 -4.32 5.44 -61.42 -0.33 -4.66 16 26 C 0.53 4.83 7.43 -11.95 -0.09 4.74 16 27 O -0.54 -7.14 15.70 5.55 0.09 -7.05 16 28 C 0.11 1.36 5.85 -2.52 -0.01 1.35 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 31 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.27 7.87 -51.93 -0.41 -0.14 16 37 H 0.10 1.04 6.46 -51.93 -0.34 0.70 16 38 H 0.35 2.69 7.85 -39.29 -0.31 2.38 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 41 H 0.07 0.20 8.12 -51.93 -0.42 -0.22 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.40 2.13 8.80 -40.82 -0.36 1.77 16 46 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 47 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -37.73 391.74 -10.48 -48.21 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.68 Total: -0.17 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.81 Total: -0.45 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.84 Total: -46.92 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.73 -10.48 -48.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690695493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.675 kcal (2) G-P(sol) polarization free energy of solvation -37.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds