Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99941 * 2 1 4 4 H 1.48509 * 109.47037 * 269.99639 * 3 2 1 5 5 H 1.48499 * 109.47408 * 29.99085 * 3 2 1 6 6 H 1.48494 * 109.47463 * 149.99639 * 3 2 1 7 7 C 1.38794 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00152 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34767 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.65203 * 359.96817 * 13 11 10 15 15 C 1.54322 * 107.27494 * 181.10522 * 14 13 11 16 16 C 1.55162 * 102.93862 * 22.19832 * 15 14 13 17 17 H 1.09002 * 111.00840 * 82.60893 * 16 15 14 18 18 C 1.52999 * 111.00227 * 206.42220 * 16 15 14 19 19 N 1.46903 * 109.47113 * 184.99903 * 18 16 15 20 20 C 1.46903 * 110.99849 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.40055 * 35.00111 * 20 19 18 22 22 C 1.53068 * 109.40036 * 154.82969 * 20 19 18 23 23 C 1.53337 * 108.42929 * 168.94379 * 22 20 19 24 24 C 1.52923 * 108.67551 * 292.46903 * 23 22 20 25 25 N 1.45761 * 110.48732 * 50.74986 * 24 23 22 26 26 C 1.33182 * 124.05395 * 340.95575 * 25 24 23 27 27 O 1.21283 * 118.11795 * 182.18461 * 26 25 24 28 28 C 1.47432 * 125.64953 * 180.02562 * 13 11 10 29 29 H 0.96994 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47063 * 59.99826 * 10 9 7 31 31 H 1.09000 * 109.47011 * 300.00031 * 10 9 7 32 32 H 1.09005 * 109.87421 * 61.69174 * 14 13 11 33 33 H 1.08992 * 110.01417 * 300.60204 * 14 13 11 34 34 H 1.08991 * 110.72353 * 263.83369 * 15 14 13 35 35 H 1.08999 * 110.86895 * 140.62479 * 15 14 13 36 36 H 1.09003 * 109.47210 * 64.99916 * 18 16 15 37 37 H 1.09003 * 109.47209 * 304.99902 * 18 16 15 38 38 H 1.00894 * 110.99859 * 303.95181 * 19 18 16 39 39 H 1.08998 * 109.67439 * 288.68097 * 22 20 19 40 40 H 1.09005 * 109.67701 * 49.20721 * 22 20 19 41 41 H 1.08999 * 109.60441 * 52.22325 * 23 22 20 42 42 H 1.09004 * 109.61078 * 172.71038 * 23 22 20 43 43 H 1.09004 * 109.30336 * 171.05783 * 24 23 22 44 44 H 1.08997 * 109.30324 * 290.64684 * 24 23 22 45 45 H 0.96998 * 117.95020 * 160.92217 * 25 24 23 46 46 H 1.09003 * 110.36218 * 36.98713 * 28 13 11 47 47 H 1.08992 * 110.36655 * 274.66337 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 4.3112 -6.2451 0.0007 15 6 4.8666 -7.6846 -0.0273 16 6 3.6848 -8.5017 -0.6132 17 1 3.6707 -8.4430 -1.7015 18 6 3.7399 -9.9576 -0.1461 19 7 2.6800 -10.7260 -0.8125 20 6 2.7028 -12.1321 -0.3878 21 1 2.9945 -12.1889 0.6609 22 6 1.3080 -12.7383 -0.5611 23 6 1.4138 -14.2574 -0.3812 24 6 2.2160 -14.8340 -1.5485 25 7 3.4673 -14.1055 -1.7168 26 6 3.6945 -12.8896 -1.2231 27 8 4.7620 -12.3659 -1.4624 28 6 2.4656 -7.7680 -0.0008 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7314 0.8905 31 1 3.1245 -3.7314 -0.8894 32 1 4.6483 -5.7352 0.9032 33 1 4.6489 -5.7002 -0.8808 34 1 5.1086 -8.0243 0.9796 35 1 5.7403 -7.7512 -0.6757 36 1 3.5945 -9.9987 0.9334 37 1 4.7110 -10.3836 -0.3985 38 1 1.7747 -10.3125 -0.6466 39 1 0.6329 -12.3261 0.1888 40 1 0.9309 -12.5123 -1.5586 41 1 1.9220 -14.4801 0.5570 42 1 0.4156 -14.6952 -0.3720 43 1 2.4340 -15.8838 -1.3522 44 1 1.6296 -14.7529 -2.4637 45 1 4.1784 -14.5333 -2.2190 46 1 1.5800 -7.9246 -0.6166 47 1 2.2869 -8.1137 1.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690695493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = -102.052808 kcal Electronic energy + Delta-G solvation = -26823.709457 eV Core-core repulsion = 22937.815722 eV Total energy + Delta-G solvation = -3885.893735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43385 -41.01590 -38.84697 -37.47428 -36.70511 -34.59727 -33.84155 -32.34543 -30.88787 -30.43104 -28.76770 -27.68569 -25.93139 -24.91176 -23.89205 -23.01814 -21.40276 -20.72966 -20.01246 -19.55381 -18.28301 -18.05846 -17.84002 -17.23891 -16.89267 -16.78591 -16.59651 -16.14746 -15.63114 -15.48971 -15.27394 -15.19397 -14.98015 -14.56740 -14.42591 -14.30394 -14.28457 -13.87802 -13.56916 -13.37803 -13.18044 -13.13730 -12.89586 -12.79355 -12.62742 -12.55672 -12.23826 -12.01949 -11.84432 -11.70309 -11.65783 -11.60342 -11.15090 -10.99421 -10.82264 -10.30407 -9.99785 -9.71501 -9.45454 -8.69299 -8.35572 -6.14499 1.23011 1.42197 1.44217 1.53833 1.55821 1.64214 2.08625 2.26431 2.35174 2.98416 3.05420 3.23974 3.50573 3.56662 3.63507 3.76548 3.86831 3.89908 3.94069 4.11861 4.20244 4.25759 4.28361 4.35844 4.41580 4.43785 4.53680 4.59742 4.69004 4.75817 4.82567 4.84045 4.94171 4.95436 5.03356 5.05875 5.10905 5.26108 5.30516 5.38855 5.40686 5.83041 5.94262 6.18872 6.28986 6.37013 6.45154 7.05342 7.08705 7.29225 8.73822 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001762 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.050242 B =15891.301289 C =16565.784668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.121 4.121 11 C 0.545 3.455 12 O -0.567 6.567 13 N -0.617 5.617 14 C 0.091 3.909 15 C -0.113 4.113 16 C -0.086 4.086 17 H 0.082 0.918 18 C 0.079 3.921 19 N -0.686 5.686 20 C 0.077 3.923 21 H 0.083 0.917 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.103 3.897 25 N -0.716 5.716 26 C 0.519 3.481 27 O -0.592 6.592 28 C 0.108 3.892 29 H 0.272 0.728 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.354 0.646 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.401 0.599 46 H 0.064 0.936 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -33.443 0.367 34.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.272 4.272 11 C 0.334 3.666 12 O -0.445 6.445 13 N -0.352 5.352 14 C -0.031 4.031 15 C -0.151 4.151 16 C -0.105 4.105 17 H 0.101 0.899 18 C -0.050 4.050 19 N -0.320 5.320 20 C -0.036 4.036 21 H 0.101 0.899 22 C -0.164 4.164 23 C -0.169 4.169 24 C -0.021 4.021 25 N -0.367 5.367 26 C 0.306 3.694 27 O -0.473 6.473 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.236 0.764 46 H 0.082 0.918 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.037 -33.330 -0.180 34.286 hybrid contribution 1.344 1.290 0.498 1.928 sum 9.381 -32.040 0.318 33.387 Atomic orbital electron populations 1.70185 1.07968 1.28660 1.47892 1.26144 0.96000 1.03324 0.93649 0.84933 0.78188 0.75900 0.78828 1.19282 1.20141 1.18202 1.23194 0.95334 0.91917 1.59063 0.89970 1.85547 1.10413 0.99188 1.97034 1.23308 1.03462 0.94102 1.06287 1.19763 0.85468 0.85988 0.75424 1.90676 1.16933 1.85776 1.51157 1.48450 1.07892 1.05779 1.73077 1.22326 0.77999 0.99683 1.03049 1.22647 0.97762 0.91375 1.03339 1.22276 0.93804 0.93683 1.00784 0.89928 1.21957 0.96391 0.90938 0.95704 1.60038 1.08717 1.00737 1.62499 1.21399 0.95881 0.89171 0.97141 0.89902 1.21899 0.93729 0.96583 1.04148 1.21888 1.02597 0.94047 0.98374 1.21679 0.84037 0.96728 0.99610 1.45536 1.18733 1.17131 1.55293 1.20474 0.87834 0.81505 0.79611 1.90683 1.28132 1.67530 1.60914 1.22419 0.98656 0.79374 1.00969 0.91934 0.87578 0.87754 0.90103 0.90634 0.88886 0.88024 0.93681 0.89985 0.82461 0.89142 0.90538 0.90559 0.87100 0.88076 0.90743 0.76359 0.91793 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.91 9.50 67.95 0.65 -31.26 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.12 -5.11 5.35 71.24 0.38 -4.73 16 11 C 0.55 22.06 7.87 87.66 0.69 22.75 16 12 O -0.57 -27.89 16.12 -3.04 -0.05 -27.94 16 13 N -0.62 -18.22 3.33 -811.78 -2.70 -20.92 16 14 C 0.09 1.92 6.49 86.73 0.56 2.48 16 15 C -0.11 -1.75 6.42 31.78 0.20 -1.55 16 16 C -0.09 -1.59 3.25 -9.40 -0.03 -1.62 16 17 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 18 C 0.08 1.34 4.87 86.30 0.42 1.76 16 19 N -0.69 -11.36 6.20 -496.17 -3.08 -14.44 16 20 C 0.08 1.02 2.76 44.03 0.12 1.14 16 21 H 0.08 0.99 7.80 -2.39 -0.02 0.98 16 22 C -0.13 -0.92 5.29 30.73 0.16 -0.76 16 23 C -0.13 -0.38 6.02 30.68 0.18 -0.19 16 24 C 0.10 0.37 7.17 86.49 0.62 0.99 16 25 N -0.72 -7.81 5.44 -467.52 -2.54 -10.36 16 26 C 0.52 9.27 7.43 87.74 0.65 9.92 16 27 O -0.59 -15.84 15.70 -3.04 -0.05 -15.89 16 28 C 0.11 2.59 5.85 86.85 0.51 3.09 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 31 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.19 8.04 -2.39 -0.02 1.17 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 37 H 0.08 1.71 6.46 -2.39 -0.02 1.69 16 38 H 0.35 5.23 7.85 -89.70 -0.70 4.53 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 0.70 8.13 -2.38 -0.02 0.68 16 41 H 0.08 0.22 8.12 -2.39 -0.02 0.20 16 42 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 44 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.40 4.00 8.80 -92.71 -0.82 3.19 16 46 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 47 H 0.07 1.60 7.91 -2.39 -0.02 1.58 16 Total: -1.00 -85.30 391.74 -2.22 -87.51 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.54 Total: 18.59 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 5.59 Total: 3.28 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -8.04 Total: -102.02 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.10 Total: -43.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -85.30 -2.22 -87.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690695493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.538 kcal (2) G-P(sol) polarization free energy of solvation -85.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds