Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48504 * 109.47205 * 269.99752 * 3 2 1 5 5 H 1.48505 * 109.47193 * 29.99499 * 3 2 1 6 6 H 1.48499 * 109.47020 * 149.99764 * 3 2 1 7 7 C 1.38804 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99905 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46904 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.91511 * 51.09370 * 11 10 9 13 13 C 1.55159 * 111.00094 * 175.00085 * 11 10 9 14 14 C 1.54322 * 103.10225 * 153.66667 * 13 11 10 15 15 N 1.47029 * 107.27039 * 337.71166 * 14 13 11 16 16 C 1.34779 * 125.64975 * 178.97511 * 15 14 13 17 17 O 1.21572 * 119.99703 * 175.03273 * 16 15 14 18 18 C 1.47621 * 119.99702 * 355.03712 * 16 15 14 19 19 C 1.39618 * 120.19305 * 55.36137 * 18 16 15 20 20 C 1.37856 * 119.92016 * 179.97438 * 19 18 16 21 21 C 1.38511 * 120.30029 * 359.97438 * 20 19 18 22 22 C 1.38099 * 120.38265 * 359.97438 * 21 20 19 23 23 C 1.38716 * 120.07807 * 359.79327 * 22 21 20 24 24 N 1.39815 * 120.15409 * 180.25068 * 23 22 21 25 25 C 1.36325 * 126.86591 * 6.25549 * 24 23 22 26 26 C 1.34958 * 106.77801 * 179.84716 * 25 24 23 27 27 N 1.33383 * 109.01369 * 0.42295 * 26 25 24 28 28 N 1.28759 * 109.93140 * 359.73607 * 27 26 25 29 29 C 1.47425 * 108.70224 * 358.94805 * 15 14 13 30 30 H 0.97000 * 120.00137 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99959 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46914 * 59.99907 * 10 9 7 33 33 H 1.08998 * 109.46460 * 299.99556 * 10 9 7 34 34 H 1.08995 * 110.72134 * 35.21018 * 13 11 10 35 35 H 1.09003 * 110.71872 * 272.11462 * 13 11 10 36 36 H 1.08999 * 109.88834 * 97.12912 * 14 13 11 37 37 H 1.09001 * 109.88173 * 218.29908 * 14 13 11 38 38 H 1.08001 * 120.03905 * 0.02562 * 19 18 16 39 39 H 1.08000 * 119.85224 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.80784 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.96185 * 180.02562 * 22 21 20 42 42 H 1.07996 * 126.60867 * 0.02562 * 25 24 23 43 43 H 1.07998 * 125.49283 * 180.12275 * 26 25 24 44 44 H 1.08997 * 110.36815 * 142.96483 * 29 15 14 45 45 H 1.09004 * 110.36237 * 265.18012 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.3253 -4.7004 -0.7906 13 6 1.7994 -6.1801 -0.1230 14 6 0.8264 -7.1675 0.5551 15 7 -0.0330 -6.3846 1.4554 16 6 -1.0290 -6.8786 2.2172 17 8 -1.6177 -6.1520 2.9940 18 6 -1.4049 -8.3020 2.1083 19 6 -0.4435 -9.2981 2.2896 20 6 -0.8009 -10.6255 2.1872 21 6 -2.1108 -10.9769 1.9055 22 6 -3.0720 -10.0020 1.7250 23 6 -2.7308 -8.6615 1.8293 24 7 -3.7039 -7.6732 1.6520 25 6 -5.0439 -7.8645 1.4905 26 6 -5.5988 -6.6415 1.3578 27 7 -4.6380 -5.7188 1.4244 28 7 -3.4955 -6.2866 1.5986 29 6 0.3758 -4.9698 1.3872 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6841 -3.7140 0.8921 33 1 2.6854 -3.7148 -0.8879 34 1 2.7523 -6.1534 0.4056 35 1 1.9482 -6.4433 -1.1702 36 1 0.2170 -7.6648 -0.1995 37 1 1.3871 -7.9064 1.1276 38 1 0.5788 -9.0289 2.5105 39 1 -0.0562 -11.3951 2.3271 40 1 -2.3821 -12.0194 1.8275 41 1 -4.0914 -10.2836 1.5061 42 1 -5.5620 -8.8120 1.4750 43 1 -6.6507 -6.4423 1.2152 44 1 -0.4967 -4.3194 1.4493 45 1 1.0781 -4.7388 2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690759850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 102.500515 kcal Electronic energy + Delta-G solvation = -29394.231879 eV Core-core repulsion = 25414.057042 eV Total energy + Delta-G solvation = -3980.174837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.24342 -41.43473 -39.89122 -38.61593 -36.47353 -35.55520 -34.05099 -32.75478 -31.91087 -31.56060 -30.66811 -30.00483 -27.37682 -25.83056 -25.14708 -24.54745 -23.41383 -22.66102 -22.30701 -21.45772 -20.78521 -19.41204 -19.08797 -18.35273 -17.48888 -17.02372 -16.81324 -16.67502 -16.30984 -16.28419 -15.89127 -15.45311 -15.29456 -15.14028 -15.06128 -14.96808 -14.55219 -14.22559 -14.02106 -13.80157 -13.54084 -13.17203 -13.11697 -12.98920 -12.76726 -12.63658 -12.33944 -12.22439 -12.18181 -12.13319 -12.11516 -11.89906 -11.65376 -11.63754 -11.06721 -10.94603 -10.42669 -10.14254 -9.67045 -9.53696 -9.03127 -7.95778 -5.26669 -0.60938 0.01290 0.85450 1.17170 1.44009 1.47701 1.53179 1.56102 1.62414 1.95499 2.54394 2.63160 3.23406 3.32090 3.37897 3.56633 3.58797 3.67601 3.80281 3.87345 4.04370 4.10456 4.14619 4.20244 4.24385 4.27544 4.32855 4.40138 4.55864 4.56823 4.63245 4.74316 4.79856 4.82417 4.95251 5.03778 5.05375 5.15359 5.18967 5.23285 5.28037 5.35128 5.38025 5.47490 5.58115 5.88775 6.24604 6.47629 7.06274 7.16375 7.29829 8.06061 8.28070 9.28075 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002899 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.790972 B = 9655.523014 C =11196.719953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.096 4.096 12 H 0.065 0.935 13 C -0.110 4.110 14 C 0.101 3.899 15 N -0.613 5.613 16 C 0.566 3.434 17 O -0.563 6.563 18 C -0.143 4.143 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.064 4.064 22 C -0.122 4.122 23 C 0.142 3.858 24 N -0.331 5.331 25 C 0.035 3.965 26 C -0.087 4.087 27 N -0.290 5.290 28 N -0.086 5.086 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.369 0.631 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.173 0.827 42 H 0.256 0.744 43 H 0.223 0.777 44 H 0.028 0.972 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 -36.399 1.211 36.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.393 5.393 10 C 0.039 3.961 11 C -0.116 4.116 12 H 0.083 0.917 13 C -0.148 4.148 14 C -0.020 4.020 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.441 6.441 18 C -0.149 4.149 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.082 4.082 22 C -0.142 4.142 23 C 0.049 3.951 24 N -0.113 5.113 25 C -0.114 4.114 26 C -0.242 4.242 27 N -0.159 5.159 28 N -0.063 5.063 29 C 0.003 3.997 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.168 0.832 39 H 0.195 0.805 40 H 0.203 0.797 41 H 0.190 0.810 42 H 0.272 0.728 43 H 0.239 0.761 44 H 0.047 0.953 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.550 -34.747 1.741 34.972 hybrid contribution -1.125 1.437 0.179 1.834 sum -4.676 -33.310 1.920 33.691 Atomic orbital electron populations 1.69877 1.06998 1.26062 1.59581 1.25709 0.96370 1.01624 1.03746 0.85057 0.77640 0.78986 0.77574 1.21001 1.22565 1.18967 1.19695 0.91671 0.85199 1.41081 0.89960 1.42691 1.05532 1.01622 1.89477 1.20762 0.93167 0.83562 0.98591 1.22466 0.97709 0.96486 0.94906 0.91674 1.22676 0.98271 0.90587 1.03255 1.22376 0.92167 0.94738 0.92768 1.48474 1.33542 1.09126 1.43503 1.18251 0.78321 0.87988 0.79944 1.90811 1.53330 1.61036 1.38900 1.19653 0.94048 0.92917 1.08243 1.21479 0.98617 0.92425 0.96667 1.21729 0.98098 0.95183 0.97284 1.21758 0.91578 1.01042 0.93838 1.21339 1.03602 0.87325 1.01980 1.18044 0.86088 0.87842 1.03146 1.48369 1.07405 1.07190 1.48368 1.24466 0.82331 1.03708 1.00942 1.24060 1.02069 0.88048 1.10046 1.74425 0.98337 1.30503 1.12675 1.82687 1.16429 0.84723 1.22449 1.22065 0.97685 0.81873 0.98032 0.94144 0.80003 0.95457 0.94326 0.88380 0.87368 0.90810 0.87855 0.83244 0.80529 0.79724 0.80968 0.72838 0.76084 0.95295 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.89 13.06 21.65 0.28 -64.60 16 2 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 3 Si 0.98 48.82 29.55 68.60 2.03 50.84 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -14.47 9.99 84.03 0.84 -13.64 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.75 -41.33 5.56 -343.45 -1.91 -43.24 16 10 C 0.17 6.82 5.73 86.38 0.49 7.31 16 11 C -0.10 -3.33 3.07 -9.23 -0.03 -3.36 16 12 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.11 -2.38 6.40 31.78 0.20 -2.17 16 14 C 0.10 2.10 5.87 86.73 0.51 2.61 16 15 N -0.61 -20.04 3.33 -814.47 -2.71 -22.75 16 16 C 0.57 20.37 5.97 86.72 0.52 20.89 16 17 O -0.56 -26.68 14.90 -3.94 -0.06 -26.74 16 18 C -0.14 -3.56 5.27 -20.00 -0.11 -3.66 16 19 C -0.07 -1.03 8.54 22.51 0.19 -0.84 16 20 C -0.10 -0.59 10.02 22.24 0.22 -0.37 16 21 C -0.06 -0.25 10.03 22.30 0.22 -0.02 16 22 C -0.12 -1.16 9.47 22.35 0.21 -0.95 16 23 C 0.14 3.13 6.69 38.45 0.26 3.39 16 24 N -0.33 -9.33 3.82 -186.57 -0.71 -10.04 16 25 C 0.03 0.64 10.91 83.24 0.91 1.55 16 26 C -0.09 -2.12 11.86 83.70 0.99 -1.13 16 27 N -0.29 -11.31 12.33 -58.72 -0.72 -12.03 16 28 N -0.09 -3.53 9.58 37.02 0.35 -3.18 16 29 C 0.13 5.02 6.33 87.02 0.55 5.57 16 30 H 0.25 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.37 22.41 7.67 -92.71 -0.71 21.70 16 32 H 0.03 1.11 7.98 -2.39 -0.02 1.09 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.41 6.46 -2.39 -0.02 1.39 16 38 H 0.15 1.68 6.75 -2.91 -0.02 1.66 16 39 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 40 H 0.19 -0.84 8.06 -2.91 -0.02 -0.86 16 41 H 0.17 0.33 6.88 -2.91 -0.02 0.31 16 42 H 0.26 0.93 7.21 -2.91 -0.02 0.91 16 43 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 45 H 0.06 2.45 7.93 -2.39 -0.02 2.44 16 Total: -1.00 -101.62 375.00 3.33 -98.29 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.32 Total: 22.87 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.46 Total: 10.57 kcal Atomic # 7 Polarization: -150.42 SS G_CDS: -5.42 Total: -155.84 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.84 kcal Total: -101.62 3.33 -98.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690759850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.792 kcal (2) G-P(sol) polarization free energy of solvation -101.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds