Wall clock time and date at job start Sat Apr 11 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46751 * 269.99814 * 3 2 1 5 5 H 1.48500 * 109.47174 * 29.99713 * 3 2 1 6 6 H 1.48489 * 109.47160 * 150.00164 * 3 2 1 7 7 C 1.38811 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00171 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47360 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.87984 * 308.87605 * 11 10 9 13 13 C 1.55155 * 111.00395 * 184.99576 * 11 10 9 14 14 C 1.54327 * 102.94281 * 206.38206 * 13 11 10 15 15 N 1.47029 * 107.26646 * 22.19130 * 14 13 11 16 16 C 1.34779 * 125.64240 * 181.01936 * 15 14 13 17 17 O 1.21583 * 119.99663 * 185.78245 * 16 15 14 18 18 C 1.47618 * 120.00110 * 5.78854 * 16 15 14 19 19 C 1.39625 * 120.19117 * 303.44799 * 18 16 15 20 20 C 1.37858 * 119.92216 * 179.97438 * 19 18 16 21 21 C 1.38512 * 120.30059 * 0.02562 * 20 19 18 22 22 C 1.38109 * 120.38206 * 359.95428 * 21 20 19 23 23 C 1.38719 * 120.07669 * 0.04232 * 22 21 20 24 24 N 1.39812 * 120.15471 * 179.97438 * 23 22 21 25 25 C 1.36331 * 126.86115 * 0.84294 * 24 23 22 26 26 C 1.34962 * 106.77239 * 179.97438 * 25 24 23 27 27 N 1.33370 * 109.01969 * 0.02562 * 26 25 24 28 28 N 1.28770 * 109.93045 * 359.71094 * 27 26 25 29 29 C 1.47420 * 108.70666 * 1.28776 * 15 14 13 30 30 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99650 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47337 * 59.98805 * 10 9 7 33 33 H 1.09008 * 109.46687 * 299.99625 * 10 9 7 34 34 H 1.09002 * 110.71673 * 88.02113 * 13 11 10 35 35 H 1.08993 * 110.87432 * 324.82018 * 13 11 10 36 36 H 1.08996 * 109.87887 * 262.78095 * 14 13 11 37 37 H 1.08987 * 110.01014 * 141.67949 * 14 13 11 38 38 H 1.08000 * 120.04067 * 359.70595 * 19 18 16 39 39 H 1.07998 * 119.85425 * 179.97438 * 20 19 18 40 40 H 1.07993 * 119.81047 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.96410 * 180.02562 * 22 21 20 42 42 H 1.07998 * 126.61105 * 0.02562 * 25 24 23 43 43 H 1.08003 * 125.48615 * 180.02562 * 26 25 24 44 44 H 1.09001 * 110.36728 * 94.47830 * 29 15 14 45 45 H 1.08996 * 110.37147 * 216.80519 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 1 0.3253 -4.6992 0.7946 13 6 1.7993 -6.1800 0.1294 14 6 0.8246 -7.1649 -0.5501 15 7 -0.0335 -6.3792 -1.4491 16 6 -1.0302 -6.8706 -2.2116 17 8 -1.6080 -6.1455 -2.9982 18 6 -1.4206 -8.2892 -2.0918 19 6 -0.4732 -9.2968 -2.2833 20 6 -0.8437 -10.6198 -2.1695 21 6 -2.1529 -10.9552 -1.8663 22 6 -3.1001 -9.9687 -1.6739 23 6 -2.7446 -8.6325 -1.7845 24 7 -3.7022 -7.6325 -1.5907 25 6 -5.0163 -7.8091 -1.2731 26 6 -5.5640 -6.5788 -1.1835 27 7 -4.6255 -5.6657 -1.4367 28 7 -3.5019 -6.2464 -1.6783 29 6 0.3813 -4.9661 -1.3832 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6843 -3.7141 0.8920 33 1 2.6854 -3.7149 -0.8879 34 1 1.9452 -6.4429 1.1771 35 1 2.7533 -6.1566 -0.3972 36 1 0.2145 -7.6620 0.2040 37 1 1.3820 -7.9056 -1.1232 38 1 0.5478 -9.0401 -2.5246 39 1 -0.1100 -11.3982 -2.3183 40 1 -2.4346 -11.9942 -1.7794 41 1 -4.1189 -10.2379 -1.4373 42 1 -5.5212 -8.7516 -1.1216 43 1 -6.5961 -6.3679 -0.9452 44 1 1.0873 -4.7403 -2.1824 45 1 -0.4882 -4.3121 -1.4481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690759851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:57 Heat of formation + Delta-G solvation = 133.754636 kcal Electronic energy + Delta-G solvation = -29409.715811 eV Core-core repulsion = 25430.896253 eV Total energy + Delta-G solvation = -3978.819557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32645 -40.42377 -38.99876 -37.33715 -34.81461 -34.52405 -32.52494 -31.62299 -30.84037 -30.32752 -29.87855 -28.61211 -25.85186 -24.53290 -24.29517 -23.22789 -21.94517 -21.77644 -21.48791 -20.09698 -19.74337 -18.52036 -17.54860 -16.85851 -16.29340 -16.08159 -15.85401 -15.62138 -15.50046 -15.01535 -14.55318 -14.38528 -14.30029 -14.10517 -13.63185 -13.39832 -13.33485 -13.11586 -12.87144 -12.51281 -12.33729 -12.18503 -11.97814 -11.75201 -11.38735 -11.34187 -11.20477 -11.15072 -10.80630 -10.59590 -10.52902 -10.37255 -9.99309 -9.83327 -9.61654 -9.55646 -9.49279 -8.80970 -8.77974 -8.42314 -6.85219 -5.67625 -2.97490 0.13283 0.57863 1.61663 1.93763 2.48723 2.72364 2.97038 3.31367 3.49542 3.53778 3.56154 3.97179 4.15552 4.29481 4.39933 4.52109 4.63433 4.69436 4.74835 4.80404 4.84219 4.93818 5.00059 5.03618 5.17283 5.28703 5.37906 5.47432 5.65051 5.65994 5.67642 5.75584 5.83523 5.91945 5.98613 6.04035 6.06540 6.09766 6.19733 6.35022 6.47085 6.50880 6.56905 6.75146 6.88417 7.63779 7.76438 8.08501 8.30242 8.50071 9.61113 10.18739 10.53000 11.54817 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002913 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.065274 B = 9609.751351 C =11132.291596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.166 3.834 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.125 4.125 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.570 3.430 17 O -0.495 6.495 18 C -0.111 4.111 19 C -0.069 4.069 20 C -0.123 4.123 21 C -0.081 4.081 22 C -0.135 4.135 23 C 0.184 3.816 24 N -0.333 5.333 25 C 0.008 3.992 26 C -0.070 4.070 27 N -0.232 5.232 28 N -0.004 5.004 29 C 0.120 3.880 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.193 0.807 43 H 0.189 0.811 44 H 0.071 0.929 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 -30.508 -1.320 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.038 3.962 11 C -0.124 4.124 12 H 0.103 0.897 13 C -0.163 4.163 14 C -0.022 4.022 15 N -0.347 5.347 16 C 0.356 3.644 17 O -0.367 6.367 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.141 4.141 21 C -0.099 4.099 22 C -0.156 4.156 23 C 0.090 3.910 24 N -0.115 5.115 25 C -0.140 4.140 26 C -0.223 4.223 27 N -0.103 5.103 28 N 0.017 4.983 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.210 0.790 43 H 0.206 0.794 44 H 0.089 0.911 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.062 -28.815 -2.070 29.330 hybrid contribution -0.666 -0.081 0.231 0.710 sum -5.728 -28.896 -1.839 29.516 Atomic orbital electron populations 1.69669 1.05069 1.25667 1.57357 1.24761 0.95499 0.97686 1.02966 0.86202 0.78575 0.83969 0.77497 1.21728 1.21801 1.20824 1.19193 0.90954 0.84145 1.43047 0.91216 1.42383 1.05962 0.99903 1.89493 1.20572 0.92689 0.84863 0.98085 1.22627 0.98433 0.94622 0.96741 0.89729 1.22643 0.98154 0.94439 1.01067 1.22085 0.92576 0.94717 0.92787 1.48393 1.32923 1.10210 1.43139 1.17424 0.79482 0.86107 0.81393 1.90880 1.51908 1.58563 1.35386 1.19785 0.92200 0.95271 1.04407 1.21269 0.98988 0.91763 0.96764 1.21226 0.96680 0.96124 1.00102 1.21138 0.92589 0.99318 0.96889 1.20842 1.01261 0.89525 1.03950 1.17444 0.86827 0.86382 1.00387 1.48164 1.07260 1.07961 1.48141 1.23478 0.84647 1.02077 1.03791 1.23301 1.01567 0.87948 1.09528 1.74512 0.97627 1.28011 1.10196 1.82853 1.15591 0.81705 1.18114 1.22376 1.00145 0.80394 0.97199 0.93458 0.78118 0.95906 0.96059 0.90064 0.90223 0.91974 0.91694 0.84206 0.84476 0.84331 0.84450 0.79007 0.79378 0.91104 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.16 5.55 -59.91 -0.33 -19.49 16 10 C 0.17 3.34 5.72 -4.04 -0.02 3.31 16 11 C -0.10 -1.73 3.06 -88.35 -0.27 -2.00 16 12 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 13 C -0.12 -1.46 6.41 -24.90 -0.16 -1.62 16 14 C 0.10 1.13 5.88 -3.06 -0.02 1.12 16 15 N -0.61 -9.36 3.32 -171.58 -0.57 -9.93 16 16 C 0.57 9.45 6.01 -12.43 -0.07 9.37 16 17 O -0.49 -10.38 14.77 5.29 0.08 -10.30 16 18 C -0.11 -1.39 5.25 -104.82 -0.55 -1.94 16 19 C -0.07 -0.59 8.55 -39.20 -0.34 -0.92 16 20 C -0.12 -0.70 10.02 -39.62 -0.40 -1.10 16 21 C -0.08 -0.42 10.03 -39.53 -0.40 -0.82 16 22 C -0.13 -0.96 9.47 -39.45 -0.37 -1.33 16 23 C 0.18 2.13 6.71 -83.31 -0.56 1.57 16 24 N -0.33 -4.58 3.84 -10.32 -0.04 -4.62 16 25 C 0.01 0.08 10.92 -16.72 -0.18 -0.10 16 26 C -0.07 -0.83 11.86 -18.05 -0.21 -1.04 16 27 N -0.23 -4.07 12.33 30.09 0.37 -3.70 16 28 N 0.00 -0.08 9.46 60.35 0.57 0.49 16 29 C 0.12 2.15 6.31 -2.41 -0.02 2.13 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.39 10.78 7.67 -40.82 -0.31 10.46 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.43 7.97 -51.92 -0.41 0.02 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.55 6.55 -51.94 -0.34 0.21 16 38 H 0.14 1.00 6.85 -52.49 -0.36 0.64 16 39 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 40 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.14 0.57 6.84 -52.49 -0.36 0.21 16 42 H 0.19 0.83 7.17 -52.49 -0.38 0.45 16 43 H 0.19 1.45 8.06 -52.48 -0.42 1.02 16 44 H 0.07 1.29 7.91 -51.93 -0.41 0.87 16 45 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -39.36 374.89 -8.30 -47.67 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.92 Total: 5.74 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -3.82 Total: -0.97 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: 0.72 Total: -65.86 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.36 -8.30 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690759851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.420 kcal (2) G-P(sol) polarization free energy of solvation -39.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds