Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46751 * 269.99814 * 3 2 1 5 5 H 1.48500 * 109.47174 * 29.99713 * 3 2 1 6 6 H 1.48489 * 109.47160 * 150.00164 * 3 2 1 7 7 C 1.38811 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00171 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47360 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.87984 * 308.87605 * 11 10 9 13 13 C 1.55155 * 111.00395 * 184.99576 * 11 10 9 14 14 C 1.54327 * 102.94281 * 206.38206 * 13 11 10 15 15 N 1.47029 * 107.26646 * 22.19130 * 14 13 11 16 16 C 1.34779 * 125.64240 * 181.01936 * 15 14 13 17 17 O 1.21583 * 119.99663 * 185.78245 * 16 15 14 18 18 C 1.47618 * 120.00110 * 5.78854 * 16 15 14 19 19 C 1.39625 * 120.19117 * 303.44799 * 18 16 15 20 20 C 1.37858 * 119.92216 * 179.97438 * 19 18 16 21 21 C 1.38512 * 120.30059 * 0.02562 * 20 19 18 22 22 C 1.38109 * 120.38206 * 359.95428 * 21 20 19 23 23 C 1.38719 * 120.07669 * 0.04232 * 22 21 20 24 24 N 1.39812 * 120.15471 * 179.97438 * 23 22 21 25 25 C 1.36331 * 126.86115 * 0.84294 * 24 23 22 26 26 C 1.34962 * 106.77239 * 179.97438 * 25 24 23 27 27 N 1.33370 * 109.01969 * 0.02562 * 26 25 24 28 28 N 1.28770 * 109.93045 * 359.71094 * 27 26 25 29 29 C 1.47420 * 108.70666 * 1.28776 * 15 14 13 30 30 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99650 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47337 * 59.98805 * 10 9 7 33 33 H 1.09008 * 109.46687 * 299.99625 * 10 9 7 34 34 H 1.09002 * 110.71673 * 88.02113 * 13 11 10 35 35 H 1.08993 * 110.87432 * 324.82018 * 13 11 10 36 36 H 1.08996 * 109.87887 * 262.78095 * 14 13 11 37 37 H 1.08987 * 110.01014 * 141.67949 * 14 13 11 38 38 H 1.08000 * 120.04067 * 359.70595 * 19 18 16 39 39 H 1.07998 * 119.85425 * 179.97438 * 20 19 18 40 40 H 1.07993 * 119.81047 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.96410 * 180.02562 * 22 21 20 42 42 H 1.07998 * 126.61105 * 0.02562 * 25 24 23 43 43 H 1.08003 * 125.48615 * 180.02562 * 26 25 24 44 44 H 1.09001 * 110.36728 * 94.47830 * 29 15 14 45 45 H 1.08996 * 110.37147 * 216.80519 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 1 0.3253 -4.6992 0.7946 13 6 1.7993 -6.1800 0.1294 14 6 0.8246 -7.1649 -0.5501 15 7 -0.0335 -6.3792 -1.4491 16 6 -1.0302 -6.8706 -2.2116 17 8 -1.6080 -6.1455 -2.9982 18 6 -1.4206 -8.2892 -2.0918 19 6 -0.4732 -9.2968 -2.2833 20 6 -0.8437 -10.6198 -2.1695 21 6 -2.1529 -10.9552 -1.8663 22 6 -3.1001 -9.9687 -1.6739 23 6 -2.7446 -8.6325 -1.7845 24 7 -3.7022 -7.6325 -1.5907 25 6 -5.0163 -7.8091 -1.2731 26 6 -5.5640 -6.5788 -1.1835 27 7 -4.6255 -5.6657 -1.4367 28 7 -3.5019 -6.2464 -1.6783 29 6 0.3813 -4.9661 -1.3832 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6843 -3.7141 0.8920 33 1 2.6854 -3.7149 -0.8879 34 1 1.9452 -6.4429 1.1771 35 1 2.7533 -6.1566 -0.3972 36 1 0.2145 -7.6620 0.2040 37 1 1.3820 -7.9056 -1.1232 38 1 0.5478 -9.0401 -2.5246 39 1 -0.1100 -11.3982 -2.3183 40 1 -2.4346 -11.9942 -1.7794 41 1 -4.1189 -10.2379 -1.4373 42 1 -5.5212 -8.7516 -1.1216 43 1 -6.5961 -6.3679 -0.9452 44 1 1.0873 -4.7403 -2.1824 45 1 -0.4882 -4.3121 -1.4481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690759851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 104.030563 kcal Electronic energy + Delta-G solvation = -29411.004743 eV Core-core repulsion = 25430.896253 eV Total energy + Delta-G solvation = -3980.108490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.24275 -41.43267 -39.89805 -38.61414 -36.47176 -35.55584 -34.04880 -32.75274 -31.91014 -31.55487 -30.66674 -30.01433 -27.37226 -25.82644 -25.14885 -24.54848 -23.41622 -22.65759 -22.29798 -21.45968 -20.77572 -19.41818 -19.08781 -18.34960 -17.48115 -17.02889 -16.82293 -16.66840 -16.30881 -16.28273 -15.89244 -15.44837 -15.29794 -15.14233 -15.05883 -14.96659 -14.54440 -14.22498 -14.02079 -13.81151 -13.54365 -13.16702 -13.11440 -12.99432 -12.77813 -12.61930 -12.30021 -12.21717 -12.19378 -12.12878 -12.11990 -11.89232 -11.65928 -11.64228 -11.05420 -10.94759 -10.42630 -10.13716 -9.66416 -9.53453 -9.03312 -7.95907 -5.26784 -0.61004 0.01783 0.85790 1.17100 1.43945 1.47696 1.53063 1.55999 1.63275 1.95536 2.54330 2.63234 3.23623 3.32093 3.37827 3.56562 3.58504 3.67970 3.80583 3.87503 4.04229 4.10709 4.14516 4.20563 4.24375 4.27529 4.33003 4.40039 4.55490 4.56837 4.63174 4.74422 4.79767 4.82266 4.95105 5.03644 5.05440 5.15319 5.18937 5.23374 5.28268 5.35266 5.37867 5.47355 5.58198 5.88886 6.24476 6.48016 7.06776 7.17377 7.29689 8.05875 8.27885 9.27947 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002913 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.065274 B = 9609.751351 C =11132.291596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.751 5.751 10 C 0.165 3.835 11 C -0.096 4.096 12 H 0.065 0.935 13 C -0.110 4.110 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.563 3.437 17 O -0.557 6.557 18 C -0.143 4.143 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.064 4.064 22 C -0.122 4.122 23 C 0.141 3.859 24 N -0.332 5.332 25 C 0.035 3.965 26 C -0.087 4.087 27 N -0.292 5.292 28 N -0.084 5.084 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.369 0.631 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.256 0.744 43 H 0.222 0.778 44 H 0.061 0.939 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -36.283 -0.345 36.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.393 5.393 10 C 0.039 3.961 11 C -0.116 4.116 12 H 0.083 0.917 13 C -0.148 4.148 14 C -0.020 4.020 15 N -0.348 5.348 16 C 0.352 3.648 17 O -0.435 6.435 18 C -0.148 4.148 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.083 4.083 22 C -0.143 4.143 23 C 0.048 3.952 24 N -0.114 5.114 25 C -0.114 4.114 26 C -0.242 4.242 27 N -0.161 5.161 28 N -0.061 5.061 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.203 0.797 41 H 0.190 0.810 42 H 0.272 0.728 43 H 0.239 0.761 44 H 0.079 0.921 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.625 -34.640 -1.075 34.846 hybrid contribution -1.103 1.436 -0.093 1.813 sum -4.728 -33.205 -1.168 33.560 Atomic orbital electron populations 1.69874 1.06998 1.26069 1.59568 1.25709 0.96372 1.01621 1.03737 0.85058 0.77795 0.79024 0.77391 1.21565 1.22291 1.18675 1.19697 0.91671 0.85197 1.41093 0.89961 1.42687 1.05525 1.01622 1.89478 1.20768 0.93181 0.83583 0.98585 1.22427 0.97745 0.96493 0.94915 0.91665 1.22673 0.98263 0.90578 1.03239 1.22357 0.92195 0.94666 0.92791 1.48493 1.33528 1.09179 1.43613 1.18268 0.78437 0.87938 0.80162 1.90826 1.53671 1.60821 1.38136 1.19651 0.94041 0.93006 1.08084 1.21467 0.98705 0.92279 0.96750 1.21726 0.97963 0.95324 0.97279 1.21754 0.91689 1.00930 0.93884 1.21339 1.03541 0.87338 1.02040 1.18044 0.86339 0.87633 1.03153 1.48418 1.08992 1.07207 1.46818 1.24478 0.83097 1.03639 1.00233 1.24064 1.02466 0.88160 1.09530 1.74437 0.99016 1.30614 1.12002 1.82828 1.16451 0.84431 1.22374 1.22026 0.97646 0.81928 0.98011 0.94138 0.80012 0.94372 0.95448 0.87365 0.88374 0.90830 0.87929 0.83284 0.80552 0.79741 0.80962 0.72817 0.76104 0.92076 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.84 13.06 21.65 0.28 -64.56 16 2 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 3 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.24 -14.48 9.99 84.03 0.84 -13.64 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 9 N -0.75 -41.30 5.55 -343.44 -1.91 -43.21 16 10 C 0.17 6.80 5.72 86.38 0.49 7.29 16 11 C -0.10 -3.33 3.06 -9.33 -0.03 -3.35 16 12 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 13 C -0.11 -2.36 6.41 31.78 0.20 -2.16 16 14 C 0.10 2.11 5.88 86.73 0.51 2.62 16 15 N -0.61 -20.06 3.32 -815.01 -2.71 -22.77 16 16 C 0.56 20.27 6.01 86.72 0.52 20.79 16 17 O -0.56 -26.41 14.77 -3.98 -0.06 -26.47 16 18 C -0.14 -3.54 5.25 -19.99 -0.10 -3.64 16 19 C -0.07 -1.04 8.55 22.51 0.19 -0.84 16 20 C -0.10 -0.60 10.02 22.24 0.22 -0.38 16 21 C -0.06 -0.25 10.03 22.30 0.22 -0.03 16 22 C -0.12 -1.17 9.47 22.35 0.21 -0.95 16 23 C 0.14 3.12 6.71 38.46 0.26 3.38 16 24 N -0.33 -9.36 3.84 -186.56 -0.72 -10.07 16 25 C 0.03 0.64 10.92 83.24 0.91 1.55 16 26 C -0.09 -2.12 11.86 83.71 0.99 -1.13 16 27 N -0.29 -11.38 12.33 -58.72 -0.72 -12.11 16 28 N -0.08 -3.46 9.46 37.02 0.35 -3.11 16 29 C 0.13 5.03 6.31 86.93 0.55 5.58 16 30 H 0.25 16.12 8.31 -92.71 -0.77 15.34 16 31 H 0.37 22.39 7.67 -92.71 -0.71 21.68 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 1.11 7.97 -2.38 -0.02 1.09 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.40 6.55 -2.39 -0.02 1.39 16 38 H 0.15 1.69 6.85 -2.91 -0.02 1.67 16 39 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.19 -0.83 8.06 -2.91 -0.02 -0.85 16 41 H 0.17 0.32 6.84 -2.91 -0.02 0.30 16 42 H 0.26 0.90 7.17 -2.91 -0.02 0.88 16 43 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.06 2.46 7.91 -2.39 -0.02 2.44 16 45 H 0.03 1.43 8.09 -2.39 -0.02 1.42 16 Total: -1.00 -101.50 374.89 3.32 -98.18 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.32 Total: 22.82 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.46 Total: 10.48 kcal Atomic # 7 Polarization: -150.41 SS G_CDS: -5.42 Total: -155.83 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -101.50 3.32 -98.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690759851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.209 kcal (2) G-P(sol) polarization free energy of solvation -101.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds