Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48496 * 109.47148 * 239.99668 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46897 * 120.00035 * 3 2 1 7 7 C 1.38814 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00302 * 157.94635 * 7 2 1 9 9 N 1.36939 * 119.99934 * 337.94982 * 7 2 1 10 10 C 1.46499 * 120.00325 * 324.92097 * 9 7 2 11 11 C 1.53000 * 109.46972 * 270.00433 * 10 9 7 12 12 N 1.46499 * 109.46972 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99825 * 179.97438 * 12 11 10 14 14 O 1.21579 * 119.99840 * 0.02562 * 13 12 11 15 15 C 1.47687 * 120.00087 * 179.97438 * 13 12 11 16 16 C 1.39690 * 120.08000 * 179.97438 * 15 13 12 17 17 C 1.37737 * 119.91960 * 179.97438 * 16 15 13 18 18 C 1.39030 * 120.08070 * 0.02562 * 17 16 15 19 19 N 1.39935 * 119.92269 * 179.97438 * 18 17 16 20 20 C 1.36308 * 126.86871 * 179.97438 * 19 18 17 21 21 C 1.34960 * 106.77954 * 179.97438 * 20 19 18 22 22 N 1.33376 * 109.01741 * 0.02562 * 21 20 19 23 23 N 1.28765 * 109.92263 * 359.97438 * 22 21 20 24 24 C 1.39032 * 120.15714 * 0.26957 * 18 17 16 25 25 C 1.37737 * 120.07630 * 359.45202 * 24 18 17 26 26 C 1.46504 * 119.99767 * 144.91933 * 9 7 2 27 27 C 1.52995 * 117.50036 * 3.23817 * 26 9 7 28 28 C 1.53000 * 117.50117 * 294.57467 * 26 9 7 29 29 H 0.96999 * 119.99506 * 355.76630 * 1 2 3 30 30 H 1.08993 * 109.47516 * 149.99866 * 10 9 7 31 31 H 1.09002 * 109.46602 * 29.99644 * 10 9 7 32 32 H 1.08993 * 109.47463 * 59.99400 * 11 10 9 33 33 H 1.09006 * 109.46645 * 299.99829 * 11 10 9 34 34 H 0.96997 * 120.00418 * 359.97438 * 12 11 10 35 35 H 1.07997 * 120.03912 * 359.95741 * 16 15 13 36 36 H 1.07998 * 119.96061 * 180.02562 * 17 16 15 37 37 H 1.08007 * 126.60784 * 359.69746 * 20 19 18 38 38 H 1.08007 * 125.49178 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.95476 * 179.70684 * 24 18 17 40 40 H 1.08004 * 120.03645 * 180.27374 * 25 24 18 41 41 H 1.09000 * 115.54708 * 148.90836 * 26 9 7 42 42 H 1.09007 * 117.50125 * 359.97438 * 27 26 9 43 43 H 1.09000 * 117.50299 * 145.02046 * 27 26 9 44 44 H 1.09002 * 117.49956 * 214.98204 * 28 26 9 45 45 H 1.08998 * 117.49773 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0310 -1.2366 -0.3506 9 7 1.4007 -2.3445 0.4463 10 6 0.4454 -2.2802 1.5551 11 6 1.1884 -2.4654 2.8797 12 7 0.2331 -2.4006 3.9886 13 6 0.6639 -2.5394 5.2581 14 8 1.8453 -2.7180 5.4830 15 6 -0.2989 -2.4734 6.3760 16 6 0.1457 -2.6176 7.6924 17 6 -0.7550 -2.5550 8.7325 18 6 -2.1054 -2.3491 8.4735 19 7 -3.0177 -2.2866 9.5327 20 6 -4.3637 -2.0913 9.4423 21 6 -4.8446 -2.1027 10.7032 22 7 -3.8344 -2.2978 11.5519 23 7 -2.7298 -2.4126 10.9002 24 6 -2.5523 -2.2113 7.1642 25 6 -1.6564 -2.2671 6.1195 26 6 1.7038 -3.6310 -0.1858 27 6 2.7655 -3.6441 -1.2874 28 6 1.2874 -3.8161 -1.6463 29 1 -0.4849 0.8378 0.0620 30 1 -0.2970 -3.0701 1.4414 31 1 -0.0522 -1.3104 1.5501 32 1 1.9308 -1.6756 2.9934 33 1 1.6860 -3.4353 2.8846 34 1 -0.7093 -2.2577 3.8091 35 1 1.1944 -2.7782 7.8943 36 1 -0.4120 -2.6660 9.7505 37 1 -4.9346 -1.9497 8.5364 38 1 -5.8805 -1.9738 10.9805 39 1 -3.6026 -2.0562 6.9665 40 1 -2.0038 -2.1555 5.1029 41 1 1.6463 -4.5011 0.4681 42 1 3.2382 -2.6955 -1.5422 43 1 3.4061 -4.5231 -1.3585 44 1 0.9562 -4.8082 -1.9534 45 1 0.7874 -2.9809 -2.1368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691232494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = 149.488710 kcal Electronic energy + Delta-G solvation = -27863.246120 eV Core-core repulsion = 23885.108844 eV Total energy + Delta-G solvation = -3978.137276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.61113 -40.30062 -38.63864 -37.17114 -34.93507 -34.81375 -33.35039 -31.93025 -31.01711 -30.99210 -30.12025 -27.70264 -25.28844 -24.35515 -23.81094 -22.49081 -21.81710 -21.51681 -21.29915 -20.43288 -19.82587 -19.05543 -17.87396 -16.33826 -16.27193 -16.09487 -15.72899 -15.59076 -15.23820 -15.03145 -14.90299 -14.68405 -14.40819 -14.04773 -14.00048 -13.72913 -13.46233 -12.96338 -12.80815 -12.66333 -12.31866 -12.01089 -11.67814 -11.64384 -11.46727 -11.42069 -11.10331 -10.82550 -10.77997 -10.40217 -10.21306 -9.99020 -9.86935 -9.82273 -9.71053 -9.56959 -9.36150 -8.93596 -8.65466 -8.55423 -6.72332 -5.93044 -3.53208 -0.10209 0.83456 1.23540 1.66435 2.11097 2.74995 3.26836 3.32997 3.35536 3.39863 3.58905 3.91273 4.00275 4.30823 4.35623 4.43799 4.55756 4.65223 4.75380 4.82417 4.86212 5.02679 5.12618 5.20618 5.23559 5.46168 5.55704 5.65262 5.81297 5.83542 5.91632 5.99599 6.00795 6.05641 6.13096 6.21189 6.41613 6.42953 6.44023 6.53878 6.70175 6.88897 6.98550 7.15039 7.42078 7.67987 7.69109 7.72426 8.32590 8.36605 9.00729 9.63321 10.17953 11.03445 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.002087 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.403887 B =13410.930021 C =13901.722663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.546 5.546 10 C 0.135 3.865 11 C 0.098 3.902 12 N -0.711 5.711 13 C 0.549 3.451 14 O -0.538 6.538 15 C -0.121 4.121 16 C -0.040 4.040 17 C -0.115 4.115 18 C 0.153 3.847 19 N -0.317 5.317 20 C 0.024 3.976 21 C -0.073 4.073 22 N -0.232 5.232 23 N -0.062 5.062 24 C -0.132 4.132 25 C -0.063 4.063 26 C 0.118 3.882 27 C -0.195 4.195 28 C -0.220 4.220 29 H 0.256 0.744 30 H 0.032 0.968 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.198 0.802 38 H 0.191 0.809 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 -5.230 14.137 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.189 4.189 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.263 5.263 10 C 0.008 3.992 11 C -0.027 4.027 12 N -0.362 5.362 13 C 0.334 3.666 14 O -0.417 6.417 15 C -0.125 4.125 16 C -0.059 4.059 17 C -0.135 4.135 18 C 0.060 3.940 19 N -0.099 5.099 20 C -0.126 4.126 21 C -0.228 4.228 22 N -0.102 5.102 23 N -0.039 5.039 24 C -0.153 4.153 25 C -0.082 4.082 26 C 0.009 3.991 27 C -0.233 4.233 28 C -0.261 4.261 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.215 0.785 38 H 0.208 0.792 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.854 -5.406 15.294 18.481 hybrid contribution -0.931 1.137 -1.052 1.807 sum -9.785 -4.269 14.242 17.799 Atomic orbital electron populations 1.70027 1.05487 1.26271 1.50874 1.25121 0.95043 0.98830 0.99879 0.86454 0.79314 0.83098 0.78527 1.20567 1.21531 1.20693 1.19068 0.94566 0.85415 1.39775 0.91409 1.43206 1.49178 1.01717 1.32209 1.21108 0.91036 1.03636 0.83382 1.22416 0.92693 1.01335 0.86290 1.46036 1.12278 1.71905 1.05950 1.18114 0.87817 0.77719 0.82920 1.90789 1.16976 1.49364 1.84523 1.20317 0.93848 1.03655 0.94650 1.21241 1.00828 0.93671 0.90166 1.20913 0.90172 1.01291 1.01120 1.17762 0.88873 1.02560 0.84787 1.48044 1.06019 1.48326 1.07518 1.23630 0.84106 1.02818 1.02037 1.23294 1.00782 1.10273 0.88448 1.74364 0.96921 1.11061 1.27828 1.82155 1.17226 1.22131 0.82428 1.20779 1.00999 1.03856 0.89687 1.21241 0.91697 0.95788 0.99466 1.21244 1.00698 0.89898 0.87224 1.23048 0.91934 1.02003 1.06326 1.23362 0.97447 1.00707 1.04546 0.93447 0.94957 0.87629 0.91264 0.92825 0.76861 0.83200 0.83627 0.78536 0.79167 0.84305 0.83846 0.89436 0.88391 0.90644 0.91153 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.33 11.33 55.49 0.63 -22.71 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 20.63 29.61 -169.99 -5.03 15.59 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.58 8.63 -15.06 -0.13 -6.71 16 8 H 0.07 1.74 6.55 -52.49 -0.34 1.40 16 9 N -0.55 -12.54 2.78 -165.66 -0.46 -13.00 16 10 C 0.14 2.78 5.45 -4.04 -0.02 2.76 16 11 C 0.10 1.83 6.00 -4.04 -0.02 1.80 16 12 N -0.71 -10.65 5.51 -61.30 -0.34 -10.99 16 13 C 0.55 8.43 7.77 -12.40 -0.10 8.34 16 14 O -0.54 -10.33 16.34 5.30 0.09 -10.24 16 15 C -0.12 -1.40 5.87 -104.95 -0.62 -2.02 16 16 C -0.04 -0.43 9.58 -39.22 -0.38 -0.81 16 17 C -0.11 -1.14 9.66 -39.47 -0.38 -1.52 16 18 C 0.15 1.43 6.70 -83.57 -0.56 0.87 16 19 N -0.32 -3.05 3.85 -10.50 -0.04 -3.09 16 20 C 0.02 0.16 10.92 -16.73 -0.18 -0.03 16 21 C -0.07 -0.54 11.86 -18.05 -0.21 -0.75 16 22 N -0.23 -2.60 12.33 30.09 0.37 -2.23 16 23 N -0.06 -0.73 13.15 60.35 0.79 0.06 16 24 C -0.13 -1.00 9.46 -39.47 -0.37 -1.37 16 25 C -0.06 -0.55 9.53 -39.22 -0.37 -0.92 16 26 C 0.12 2.39 6.56 -67.93 -0.45 1.95 16 27 C -0.19 -3.70 9.80 -26.69 -0.26 -3.96 16 28 C -0.22 -4.26 10.36 -26.69 -0.28 -4.54 16 29 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.11 2.43 5.36 -51.93 -0.28 2.15 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 4.77 6.50 -40.82 -0.27 4.50 16 35 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 36 H 0.15 1.36 7.72 -52.49 -0.41 0.95 16 37 H 0.20 0.43 7.16 -52.48 -0.38 0.06 16 38 H 0.19 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.14 0.60 6.82 -52.49 -0.36 0.24 16 40 H 0.14 0.97 6.39 -52.48 -0.34 0.63 16 41 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.10 2.03 6.37 -51.92 -0.33 1.70 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -32.10 383.14 -8.25 -40.34 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.61 Total: 7.18 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.42 Total: -6.69 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.95 Total: -51.96 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.10 -8.25 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691232494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.833 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds