Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48498 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47116 * 300.00125 * 3 2 1 6 6 H 1.48499 * 109.47007 * 60.00421 * 3 2 1 7 7 C 1.38812 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99750 * 0.27741 * 7 2 1 10 10 C 1.46502 * 119.99764 * 179.72423 * 9 7 2 11 11 C 1.53001 * 109.46662 * 187.36283 * 10 9 7 12 12 H 1.09000 * 109.87752 * 313.47219 * 11 10 9 13 13 C 1.54323 * 109.87879 * 192.29160 * 11 10 9 14 14 C 1.55159 * 102.94507 * 218.39216 * 13 11 10 15 15 C 1.54911 * 101.57954 * 35.50250 * 14 13 11 16 16 N 1.47025 * 109.88117 * 74.48857 * 11 10 9 17 17 C 1.34771 * 125.64918 * 298.38706 * 16 11 10 18 18 O 1.21574 * 120.00172 * 3.49727 * 17 16 11 19 19 C 1.47691 * 120.00187 * 183.49278 * 17 16 11 20 20 C 1.39691 * 120.07762 * 336.80481 * 19 17 16 21 21 C 1.37743 * 119.91805 * 179.70154 * 20 19 17 22 22 C 1.39032 * 120.07883 * 0.56601 * 21 20 19 23 23 N 1.39932 * 119.92010 * 179.70242 * 22 21 20 24 24 C 1.36310 * 126.86791 * 359.73631 * 23 22 21 25 25 C 1.34960 * 106.78235 * 179.90452 * 24 23 22 26 26 N 1.33380 * 109.01219 * 0.36882 * 25 24 23 27 27 N 1.28759 * 109.92641 * 359.76552 * 26 25 24 28 28 C 1.39029 * 120.15744 * 359.73197 * 22 21 20 29 29 C 1.37745 * 120.08031 * 359.96974 * 28 22 21 30 30 H 0.96991 * 120.00200 * 359.97438 * 1 2 3 31 31 H 0.96992 * 119.99997 * 359.72107 * 9 7 2 32 32 H 1.08995 * 109.47374 * 307.36197 * 10 9 7 33 33 H 1.08997 * 109.46867 * 67.36762 * 10 9 7 34 34 H 1.08995 * 110.72690 * 336.75861 * 13 11 10 35 35 H 1.09003 * 110.71846 * 100.03345 * 13 11 10 36 36 H 1.09005 * 111.00601 * 277.43244 * 14 13 11 37 37 H 1.08993 * 111.04034 * 153.59579 * 14 13 11 38 38 H 1.08997 * 110.36543 * 204.15490 * 15 14 13 39 39 H 1.09000 * 110.45455 * 81.87904 * 15 14 13 40 40 H 1.07998 * 120.03940 * 359.96945 * 20 19 17 41 41 H 1.07997 * 119.96216 * 180.29417 * 21 20 19 42 42 H 1.08001 * 126.61038 * 0.03379 * 24 23 22 43 43 H 1.08001 * 125.49495 * 180.13547 * 25 24 23 44 44 H 1.07995 * 119.95999 * 179.97438 * 28 22 21 45 45 H 1.08000 * 120.03763 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0068 10 6 2.0582 -3.6567 -0.0135 11 6 1.0743 -4.8127 -0.2045 12 1 0.2190 -4.6849 0.4590 13 6 1.7769 -6.1543 0.0920 14 6 1.1829 -7.1028 -0.9827 15 6 1.0287 -6.1457 -2.1910 16 7 0.6205 -4.8572 -1.6022 17 6 -0.0561 -3.8815 -2.2399 18 8 -0.2849 -2.8304 -1.6735 19 6 -0.5194 -4.0891 -3.6268 20 6 0.1140 -5.0291 -4.4432 21 6 -0.3248 -5.2244 -5.7342 22 6 -1.3893 -4.4791 -6.2286 23 7 -1.8283 -4.6758 -7.5427 24 6 -1.3154 -5.5500 -8.4541 25 6 -2.0415 -5.4071 -9.5827 26 7 -2.9704 -4.4704 -9.3860 27 7 -2.8808 -4.0083 -8.1875 28 6 -2.0181 -3.5383 -5.4209 29 6 -1.5885 -3.3420 -4.1269 30 1 -0.4850 0.8399 0.0004 31 1 0.3557 -2.3881 -0.0068 32 1 2.7800 -3.6553 -0.8302 33 1 2.5823 -3.7786 0.9344 34 1 2.8558 -6.0601 -0.0307 35 1 1.5310 -6.5052 1.0943 36 1 0.2152 -7.4931 -0.6675 37 1 1.8730 -7.9145 -1.2127 38 1 0.2594 -6.5131 -2.8701 39 1 1.9779 -6.0391 -2.7161 40 1 0.9440 -5.6050 -4.0613 41 1 0.1613 -5.9543 -6.3645 42 1 -0.4886 -6.2281 -8.3017 43 1 -1.8919 -5.9592 -10.4987 44 1 -2.8443 -2.9608 -5.8083 45 1 -2.0778 -2.6113 -3.4999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699761641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 152.331068 kcal Electronic energy + Delta-G solvation = -29327.749648 eV Core-core repulsion = 25349.735625 eV Total energy + Delta-G solvation = -3978.014023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.48697 -40.46824 -38.94187 -37.02721 -34.83988 -34.11566 -32.23029 -31.29184 -31.23046 -30.86796 -29.72817 -28.70511 -25.49256 -24.84956 -23.70468 -23.23497 -22.18082 -21.62521 -21.29454 -20.90490 -19.17230 -18.66682 -17.54723 -16.64019 -16.45404 -16.13379 -15.62051 -15.49467 -15.14782 -14.62105 -14.48966 -14.25952 -14.09729 -13.95679 -13.54181 -13.46318 -13.21671 -12.96605 -12.92185 -12.63376 -12.39096 -12.17584 -11.76492 -11.54303 -11.51354 -11.43864 -11.27986 -11.16017 -10.85089 -10.72248 -10.64619 -10.48337 -9.94064 -9.74805 -9.56605 -9.34016 -9.04565 -8.68636 -8.64133 -8.21712 -6.58861 -5.48269 -2.75304 0.10341 1.03245 1.43369 1.80694 2.21806 3.03920 3.19552 3.54312 3.59037 3.61600 3.78296 4.06594 4.11393 4.43170 4.46457 4.49689 4.61132 4.67829 4.75752 4.86435 4.86943 4.97576 4.99980 5.20798 5.26744 5.30604 5.34584 5.46290 5.66180 5.67349 5.69234 5.76784 5.80810 5.84010 5.93432 5.99916 6.02549 6.17039 6.20793 6.26932 6.41862 6.58624 6.63505 6.79849 6.96152 7.80324 7.85138 7.89009 8.59001 8.79343 9.82407 10.47397 10.87052 11.72633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.003191 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.309091 B = 8773.348464 C =10814.511978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.895 3.105 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.061 0.939 9 N -0.719 5.719 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.544 3.456 18 O -0.440 6.440 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.135 4.135 22 C 0.145 3.855 23 N -0.313 5.313 24 C 0.021 3.979 25 C -0.075 4.075 26 N -0.235 5.235 27 N -0.060 5.060 28 C -0.112 4.112 29 C -0.039 4.039 30 H 0.248 0.752 31 H 0.399 0.601 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.145 0.855 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.150 -21.755 -12.934 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.206 4.206 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.371 5.371 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.034 4.034 16 N -0.350 5.350 17 C 0.330 3.670 18 O -0.309 6.309 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.156 4.156 22 C 0.052 3.948 23 N -0.095 5.095 24 C -0.129 4.129 25 C -0.230 4.230 26 N -0.104 5.104 27 N -0.038 5.038 28 C -0.132 4.132 29 C -0.058 4.058 30 H 0.058 0.942 31 H 0.241 0.759 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.213 0.787 43 H 0.207 0.793 44 H 0.163 0.837 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.083 -19.871 -12.574 23.540 hybrid contribution 1.270 0.136 -0.275 1.306 sum 0.187 -19.735 -12.849 23.550 Atomic orbital electron populations 1.69743 1.04730 1.24451 1.57384 1.24664 0.95356 0.97031 1.03581 0.86294 0.78749 0.85208 0.77021 1.20900 1.22189 1.22138 1.19163 0.90473 0.84699 1.42443 0.92137 1.42868 1.07082 0.98803 1.88342 1.20981 0.93224 0.86755 0.97470 1.21916 0.97679 0.95534 0.82057 0.90696 1.22638 1.00646 0.93631 0.99362 1.22799 1.01789 0.97309 0.95298 1.22677 0.99633 0.84435 0.96650 1.48309 1.57039 1.16636 1.12992 1.17877 0.79910 0.83701 0.85501 1.91043 1.52070 1.22735 1.65068 1.20276 0.97618 0.97655 0.95219 1.21902 0.99701 0.96635 0.92465 1.20748 0.96768 1.01260 0.96831 1.17754 0.96932 0.99445 0.80640 1.48049 1.24277 1.27240 1.09931 1.23576 1.02028 0.97264 0.90026 1.23263 0.96879 1.02290 1.00569 1.74361 1.18816 1.08500 1.08735 1.82175 1.04260 1.16906 1.00497 1.20910 1.01116 0.97728 0.93434 1.21305 0.94039 0.96394 0.94103 0.94182 0.75872 0.96417 0.96517 0.90318 0.90097 0.90647 0.90081 0.90198 0.91381 0.82744 0.84733 0.78728 0.79309 0.83729 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.34 13.06 55.49 0.72 -28.61 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 23.67 29.55 -169.99 -5.02 18.64 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -19.41 4.13 -59.91 -0.25 -19.66 16 10 C 0.14 3.01 5.62 -4.04 -0.02 2.99 16 11 C 0.13 2.10 3.09 -66.95 -0.21 1.89 16 12 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 13 C -0.12 -1.33 6.45 -24.90 -0.16 -1.49 16 14 C -0.13 -1.09 7.09 -24.58 -0.17 -1.26 16 15 C 0.09 0.86 5.00 -2.53 -0.01 0.85 16 16 N -0.61 -9.23 3.06 -164.17 -0.50 -9.73 16 17 C 0.54 9.89 7.50 -12.40 -0.09 9.80 16 18 O -0.44 -10.62 12.67 5.30 0.07 -10.55 16 19 C -0.10 -1.49 5.77 -104.95 -0.61 -2.10 16 20 C -0.09 -0.92 7.98 -39.22 -0.31 -1.24 16 21 C -0.14 -1.21 9.46 -39.47 -0.37 -1.59 16 22 C 0.14 1.62 6.70 -83.57 -0.56 1.06 16 23 N -0.31 -3.49 3.85 -10.50 -0.04 -3.53 16 24 C 0.02 0.16 10.92 -16.73 -0.18 -0.02 16 25 C -0.07 -0.63 11.86 -18.04 -0.21 -0.84 16 26 N -0.23 -2.94 12.33 30.09 0.37 -2.57 16 27 N -0.06 -0.82 13.15 60.35 0.79 -0.03 16 28 C -0.11 -1.41 9.66 -39.47 -0.38 -1.79 16 29 C -0.04 -0.56 9.58 -39.22 -0.38 -0.93 16 30 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.40 11.51 4.98 -40.82 -0.20 11.31 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 39 H 0.07 0.58 7.37 -51.93 -0.38 0.20 16 40 H 0.16 1.28 4.17 -52.49 -0.22 1.06 16 41 H 0.13 0.71 6.82 -52.49 -0.36 0.35 16 42 H 0.20 0.59 7.16 -52.49 -0.38 0.21 16 43 H 0.19 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.14 1.76 7.72 -52.49 -0.41 1.36 16 45 H 0.15 2.34 7.81 -52.49 -0.41 1.93 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -38.92 368.08 -7.80 -46.73 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.57 Total: 6.01 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.92 Total: -2.25 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 1.10 Total: -64.13 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.92 -7.80 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699761641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.057 kcal (2) G-P(sol) polarization free energy of solvation -38.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds