Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47437 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99913 * 3 2 1 7 7 C 1.38812 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99555 * 173.76455 * 9 7 2 11 11 C 1.52994 * 112.85514 * 294.86331 * 10 9 7 12 12 N 1.46496 * 109.47277 * 292.10914 * 11 10 9 13 13 C 1.34774 * 120.00168 * 180.19358 * 12 11 10 14 14 O 1.21549 * 120.00083 * 359.97438 * 13 12 11 15 15 C 1.47870 * 120.00224 * 179.97438 * 13 12 11 16 16 C 1.39660 * 120.07943 * 359.72897 * 15 13 12 17 17 C 1.38020 * 120.08961 * 179.78556 * 16 15 13 18 18 C 1.38164 * 120.27297 * 0.46281 * 17 16 15 19 19 C 1.39406 * 120.17377 * 359.78779 * 18 17 16 20 20 C 1.48421 * 120.05150 * 179.97438 * 19 18 17 21 21 N 1.33979 * 125.64608 * 359.97438 * 20 19 18 22 22 C 1.30679 * 109.77532 * 179.97438 * 21 20 19 23 23 N 1.34521 * 108.29601 * 359.97438 * 22 21 20 24 24 H 0.97005 * 126.74098 * 180.02562 * 23 22 21 25 25 N 1.31483 * 125.65043 * 179.67179 * 20 19 18 26 26 C 1.39102 * 119.89962 * 359.97438 * 19 18 17 27 27 C 1.53787 * 113.68956 * 66.13385 * 10 9 7 28 28 C 1.53786 * 87.07959 * 89.12585 * 27 10 9 29 29 C 1.53781 * 87.08361 * 25.43289 * 28 27 10 30 30 H 0.97008 * 119.99729 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00182 * 353.76875 * 9 7 2 32 32 H 1.08999 * 109.47681 * 172.10328 * 11 10 9 33 33 H 1.09010 * 109.47124 * 52.10309 * 11 10 9 34 34 H 0.97005 * 120.00281 * 0.18552 * 12 11 10 35 35 H 1.07997 * 119.95514 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.86264 * 180.21243 * 17 16 15 37 37 H 1.08005 * 119.91361 * 179.76652 * 18 17 16 38 38 H 1.08004 * 125.85193 * 179.97438 * 22 21 20 39 39 H 1.07992 * 120.13248 * 179.97438 * 26 19 18 40 40 H 1.08997 * 113.61597 * 203.67038 * 27 10 9 41 41 H 1.09003 * 113.61325 * 334.57689 * 27 10 9 42 42 H 1.09000 * 113.61003 * 270.88370 * 28 27 10 43 43 H 1.08993 * 113.61450 * 139.98237 * 28 27 10 44 44 H 1.08998 * 113.61168 * 220.02457 * 29 28 27 45 45 H 1.08991 * 113.61334 * 89.11324 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0514 -3.6531 -0.1367 11 6 2.7379 -3.7998 -1.4961 12 7 1.7229 -3.9336 -2.5439 13 6 2.0975 -4.0801 -3.8302 14 8 3.2775 -4.1007 -4.1210 15 6 1.0729 -4.2157 -4.8878 16 6 -0.2833 -4.1979 -4.5549 17 6 -1.2398 -4.3200 -5.5424 18 6 -0.8624 -4.4699 -6.8630 19 6 0.4883 -4.4944 -7.2073 20 6 0.8907 -4.6562 -8.6267 21 7 0.0545 -4.7884 -9.6651 22 6 0.7393 -4.9094 -10.7715 23 7 2.0482 -4.8566 -10.4660 24 1 2.7918 -4.9194 -11.0858 25 7 2.1267 -4.6880 -9.0740 26 6 1.4583 -4.3670 -6.2185 27 6 2.9703 -3.9706 1.0549 28 6 1.7624 -4.6723 1.6982 29 6 1.2261 -4.8846 0.2727 30 1 -0.4850 0.8401 -0.0004 31 1 0.3597 -2.3905 0.0913 32 1 3.3721 -4.6863 -1.4892 33 1 3.3482 -2.9181 -1.6920 34 1 0.7811 -3.9169 -2.3119 35 1 -0.5841 -4.0845 -3.5239 36 1 -2.2877 -4.3023 -5.2812 37 1 -1.6157 -4.5688 -7.6306 38 1 0.3252 -5.0310 -11.7616 39 1 2.5057 -4.3859 -6.4809 40 1 3.7878 -4.6478 0.8076 41 1 3.3018 -3.0859 1.5985 42 1 1.1438 -4.0095 2.3033 43 1 2.0183 -5.5994 2.2110 44 1 0.1497 -4.7376 0.1848 45 1 1.5669 -5.8114 -0.1885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700136620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 112.733139 kcal Electronic energy + Delta-G solvation = -28526.393065 eV Core-core repulsion = 24546.661948 eV Total energy + Delta-G solvation = -3979.731118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.34017 -39.99536 -38.89930 -37.85151 -34.06051 -33.38335 -33.23587 -32.10797 -31.21372 -30.16510 -29.91729 -27.25543 -25.29351 -24.19663 -24.09205 -23.53842 -22.43457 -21.49861 -21.12808 -19.75334 -18.80632 -18.22198 -17.50658 -17.08216 -16.08646 -15.87221 -15.76257 -15.39205 -15.26221 -14.82412 -14.58555 -14.31116 -14.19146 -13.90538 -13.66168 -13.27179 -13.19062 -12.92255 -12.55269 -12.45428 -12.01785 -11.79946 -11.75274 -11.33652 -11.22693 -11.00984 -10.84956 -10.74197 -10.39618 -10.35657 -10.27201 -10.21123 -10.09364 -9.73506 -9.60152 -9.45563 -9.01945 -8.88175 -8.72225 -8.44856 -7.03861 -5.82444 -3.11950 0.63396 1.05312 1.51890 2.31373 2.61285 3.25421 3.42150 3.48460 3.49876 3.50652 3.75954 4.00691 4.29137 4.54572 4.58939 4.84338 4.91000 5.05797 5.18855 5.20021 5.26949 5.29528 5.42198 5.45413 5.54124 5.59498 5.79058 5.82945 5.87637 5.97407 6.05225 6.13491 6.19647 6.30072 6.31002 6.32507 6.37305 6.39792 6.55642 6.68272 6.71512 6.75032 6.90844 6.97894 7.06828 7.71066 7.71436 7.97774 8.36474 8.62250 9.48012 10.01036 10.36353 11.39647 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002633 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.941756 B =10632.350133 C =11463.909207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.120 3.880 12 N -0.698 5.698 13 C 0.553 3.447 14 O -0.548 6.548 15 C -0.130 4.130 16 C -0.065 4.065 17 C -0.130 4.130 18 C -0.055 4.055 19 C -0.033 4.033 20 C 0.275 3.725 21 N -0.536 5.536 22 C 0.263 3.737 23 N -0.485 5.485 24 H 0.443 0.557 25 N -0.300 5.300 26 C -0.026 4.026 27 C -0.150 4.150 28 C -0.128 4.128 29 C -0.145 4.145 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.225 0.775 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -13.918 -16.744 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.006 4.006 12 N -0.347 5.347 13 C 0.339 3.661 14 O -0.427 6.427 15 C -0.133 4.133 16 C -0.084 4.084 17 C -0.148 4.148 18 C -0.075 4.075 19 C -0.036 4.036 20 C -0.005 4.005 21 N -0.263 5.263 22 C -0.036 4.036 23 N -0.203 5.203 24 H 0.289 0.711 25 N -0.129 5.129 26 C -0.047 4.047 27 C -0.191 4.191 28 C -0.166 4.166 29 C -0.183 4.183 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.241 0.759 39 H 0.161 0.839 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.039 -13.696 -16.456 21.435 hybrid contribution 0.114 1.067 -0.692 1.277 sum -0.925 -12.629 -17.148 21.317 Atomic orbital electron populations 1.69659 1.05042 1.25616 1.57502 1.24717 0.95481 0.97622 1.02645 0.86168 0.79008 0.84223 0.77122 1.20477 1.21872 1.21923 1.19142 0.91110 0.83592 1.42685 0.91072 1.42068 1.06090 0.99049 1.86784 1.20823 0.93057 0.87445 0.90667 1.21902 0.90473 1.00742 0.87516 1.45680 1.11038 1.72044 1.05948 1.18136 0.88086 0.77159 0.82692 1.90741 1.18063 1.51456 1.82451 1.19951 0.93708 1.05679 0.93951 1.21573 0.91852 0.94657 1.00328 1.21065 1.00056 1.01517 0.92145 1.21348 0.94674 0.94736 0.96767 1.17305 0.93699 1.06258 0.86329 1.22282 0.86238 0.97792 0.94156 1.70505 1.34507 1.24144 0.97179 1.26097 0.81460 0.96007 1.00063 1.48145 1.08899 1.56390 1.06877 0.71112 1.78338 1.20838 1.25582 0.88137 1.21257 1.00234 0.92749 0.90508 1.23311 0.96374 1.00386 0.99007 1.22631 0.98525 0.99533 0.95888 1.23155 0.99882 0.97873 0.97398 0.93559 0.77932 0.92575 0.91120 0.76479 0.84860 0.84607 0.84399 0.75898 0.83929 0.91290 0.90701 0.90026 0.92736 0.91653 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.81 13.07 55.49 0.73 -26.09 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.23 -6.14 9.05 -15.06 -0.14 -6.27 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -15.88 5.19 -46.47 -0.24 -16.12 16 10 C 0.17 3.16 0.81 -131.00 -0.11 3.05 16 11 C 0.12 2.22 5.08 -4.05 -0.02 2.20 16 12 N -0.70 -12.11 5.37 -61.25 -0.33 -12.44 16 13 C 0.55 10.10 7.77 -12.32 -0.10 10.00 16 14 O -0.55 -11.73 16.34 5.32 0.09 -11.64 16 15 C -0.13 -2.01 5.87 -105.01 -0.62 -2.62 16 16 C -0.06 -0.83 9.54 -39.13 -0.37 -1.20 16 17 C -0.13 -1.43 10.02 -39.69 -0.40 -1.83 16 18 C -0.05 -0.64 9.68 -39.17 -0.38 -1.02 16 19 C -0.03 -0.45 5.87 -104.95 -0.62 -1.07 16 20 C 0.27 3.64 7.77 -156.63 -1.22 2.42 16 21 N -0.54 -5.99 10.81 -12.38 -0.13 -6.13 16 22 C 0.26 1.81 13.11 -90.70 -1.19 0.62 16 23 N -0.48 -3.71 7.44 29.52 0.22 -3.49 16 24 H 0.44 1.61 8.96 -182.34 -1.63 -0.03 16 25 N -0.30 -3.85 12.42 32.10 0.40 -3.45 16 26 C -0.03 -0.40 9.22 -38.85 -0.36 -0.76 16 27 C -0.15 -2.55 7.28 -25.91 -0.19 -2.74 16 28 C -0.13 -1.96 7.99 -25.92 -0.21 -2.17 16 29 C -0.15 -2.18 7.04 -25.91 -0.18 -2.36 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.39 9.31 7.87 -40.82 -0.32 8.99 16 32 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 33 H 0.07 1.54 7.80 -51.92 -0.41 1.13 16 34 H 0.40 6.33 6.32 -40.82 -0.26 6.07 16 35 H 0.13 1.54 6.39 -52.49 -0.34 1.20 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.14 1.39 7.82 -52.48 -0.41 0.98 16 38 H 0.22 0.26 8.06 -52.48 -0.42 -0.16 16 39 H 0.14 2.33 7.42 -52.49 -0.39 1.94 16 40 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 41 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -35.00 384.34 -11.76 -46.76 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.07 Total: 13.63 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -6.18 Total: -4.08 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: 0.64 Total: -67.71 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.00 -11.76 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700136620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.489 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds