Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47437 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99913 * 3 2 1 7 7 C 1.38812 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99555 * 173.76455 * 9 7 2 11 11 C 1.52994 * 112.85514 * 294.86331 * 10 9 7 12 12 N 1.46496 * 109.47277 * 292.10914 * 11 10 9 13 13 C 1.34774 * 120.00168 * 180.19358 * 12 11 10 14 14 O 1.21549 * 120.00083 * 359.97438 * 13 12 11 15 15 C 1.47870 * 120.00224 * 179.97438 * 13 12 11 16 16 C 1.39660 * 120.07943 * 359.72897 * 15 13 12 17 17 C 1.38020 * 120.08961 * 179.78556 * 16 15 13 18 18 C 1.38164 * 120.27297 * 0.46281 * 17 16 15 19 19 C 1.39406 * 120.17377 * 359.78779 * 18 17 16 20 20 C 1.48421 * 120.05150 * 179.97438 * 19 18 17 21 21 N 1.33979 * 125.64608 * 359.97438 * 20 19 18 22 22 C 1.30679 * 109.77532 * 179.97438 * 21 20 19 23 23 N 1.34521 * 108.29601 * 359.97438 * 22 21 20 24 24 H 0.97005 * 126.74098 * 180.02562 * 23 22 21 25 25 N 1.31483 * 125.65043 * 179.67179 * 20 19 18 26 26 C 1.39102 * 119.89962 * 359.97438 * 19 18 17 27 27 C 1.53787 * 113.68956 * 66.13385 * 10 9 7 28 28 C 1.53786 * 87.07959 * 89.12585 * 27 10 9 29 29 C 1.53781 * 87.08361 * 25.43289 * 28 27 10 30 30 H 0.97008 * 119.99729 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00182 * 353.76875 * 9 7 2 32 32 H 1.08999 * 109.47681 * 172.10328 * 11 10 9 33 33 H 1.09010 * 109.47124 * 52.10309 * 11 10 9 34 34 H 0.97005 * 120.00281 * 0.18552 * 12 11 10 35 35 H 1.07997 * 119.95514 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.86264 * 180.21243 * 17 16 15 37 37 H 1.08005 * 119.91361 * 179.76652 * 18 17 16 38 38 H 1.08004 * 125.85193 * 179.97438 * 22 21 20 39 39 H 1.07992 * 120.13248 * 179.97438 * 26 19 18 40 40 H 1.08997 * 113.61597 * 203.67038 * 27 10 9 41 41 H 1.09003 * 113.61325 * 334.57689 * 27 10 9 42 42 H 1.09000 * 113.61003 * 270.88370 * 28 27 10 43 43 H 1.08993 * 113.61450 * 139.98237 * 28 27 10 44 44 H 1.08998 * 113.61168 * 220.02457 * 29 28 27 45 45 H 1.08991 * 113.61334 * 89.11324 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0514 -3.6531 -0.1367 11 6 2.7379 -3.7998 -1.4961 12 7 1.7229 -3.9336 -2.5439 13 6 2.0975 -4.0801 -3.8302 14 8 3.2775 -4.1007 -4.1210 15 6 1.0729 -4.2157 -4.8878 16 6 -0.2833 -4.1979 -4.5549 17 6 -1.2398 -4.3200 -5.5424 18 6 -0.8624 -4.4699 -6.8630 19 6 0.4883 -4.4944 -7.2073 20 6 0.8907 -4.6562 -8.6267 21 7 0.0545 -4.7884 -9.6651 22 6 0.7393 -4.9094 -10.7715 23 7 2.0482 -4.8566 -10.4660 24 1 2.7918 -4.9194 -11.0858 25 7 2.1267 -4.6880 -9.0740 26 6 1.4583 -4.3670 -6.2185 27 6 2.9703 -3.9706 1.0549 28 6 1.7624 -4.6723 1.6982 29 6 1.2261 -4.8846 0.2727 30 1 -0.4850 0.8401 -0.0004 31 1 0.3597 -2.3905 0.0913 32 1 3.3721 -4.6863 -1.4892 33 1 3.3482 -2.9181 -1.6920 34 1 0.7811 -3.9169 -2.3119 35 1 -0.5841 -4.0845 -3.5239 36 1 -2.2877 -4.3023 -5.2812 37 1 -1.6157 -4.5688 -7.6306 38 1 0.3252 -5.0310 -11.7616 39 1 2.5057 -4.3859 -6.4809 40 1 3.7878 -4.6478 0.8076 41 1 3.3018 -3.0859 1.5985 42 1 1.1438 -4.0095 2.3033 43 1 2.0183 -5.5994 2.2110 44 1 0.1497 -4.7376 0.1848 45 1 1.5669 -5.8114 -0.1885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700136620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 89.502965 kcal Electronic energy + Delta-G solvation = -28527.400401 eV Core-core repulsion = 24546.661948 eV Total energy + Delta-G solvation = -3980.738454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.07422 -41.31245 -40.21890 -39.13565 -35.49106 -35.20521 -34.21891 -32.91598 -32.32341 -31.84438 -30.98516 -28.73083 -26.71169 -25.83238 -25.03933 -24.82766 -23.36900 -22.72882 -22.17532 -20.96790 -19.80846 -19.44669 -19.10706 -18.57045 -17.29838 -17.09038 -16.71308 -16.52415 -16.34388 -16.21503 -15.97922 -15.74091 -15.50686 -15.19253 -14.99169 -14.69384 -14.50397 -14.27291 -13.91627 -13.52387 -13.19371 -13.07530 -12.97020 -12.93214 -12.78245 -12.54188 -12.34921 -12.14210 -11.93193 -11.59843 -11.54000 -11.47408 -11.20302 -11.11628 -11.06172 -10.89320 -10.73772 -10.17796 -9.89543 -9.64165 -8.97223 -7.93500 -5.19517 -0.34767 -0.01566 0.81292 1.43333 1.46466 1.53440 1.67649 1.73373 2.07870 2.20688 2.54794 2.89785 2.96837 3.38427 3.53488 3.71182 3.75780 3.83256 3.89755 3.96915 4.02545 4.10615 4.18094 4.22947 4.24274 4.47260 4.58827 4.70361 4.84270 4.88667 4.90879 4.93731 5.01812 5.06556 5.11227 5.15282 5.27656 5.31287 5.36197 5.41595 5.43923 5.49264 5.63744 5.71985 5.78621 6.22396 6.31484 6.57759 6.98340 7.20552 7.37974 8.11135 8.35695 9.28952 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002633 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.941756 B =10632.350133 C =11463.909207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.220 4.220 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.158 3.842 11 C 0.127 3.873 12 N -0.691 5.691 13 C 0.549 3.451 14 O -0.590 6.590 15 C -0.149 4.149 16 C -0.065 4.065 17 C -0.116 4.116 18 C -0.045 4.045 19 C -0.040 4.040 20 C 0.256 3.744 21 N -0.564 5.564 22 C 0.283 3.717 23 N -0.474 5.474 24 H 0.460 0.540 25 N -0.344 5.344 26 C -0.042 4.042 27 C -0.150 4.150 28 C -0.119 4.119 29 C -0.127 4.127 30 H 0.249 0.751 31 H 0.379 0.621 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.408 0.592 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.282 0.718 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 -15.702 -18.103 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.353 4.353 8 H 0.082 0.918 9 N -0.343 5.343 10 C 0.067 3.933 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.337 3.663 14 O -0.472 6.472 15 C -0.152 4.152 16 C -0.084 4.084 17 C -0.134 4.134 18 C -0.065 4.065 19 C -0.043 4.043 20 C -0.024 4.024 21 N -0.292 5.292 22 C -0.014 4.014 23 N -0.194 5.194 24 H 0.309 0.691 25 N -0.174 5.174 26 C -0.063 4.063 27 C -0.190 4.190 28 C -0.157 4.157 29 C -0.165 4.165 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.245 0.755 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.297 0.703 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.568 -15.516 -17.822 23.770 hybrid contribution 0.654 1.531 -0.426 1.718 sum -1.914 -13.986 -18.248 23.071 Atomic orbital electron populations 1.69759 1.05878 1.25587 1.59690 1.25282 0.96220 1.00042 1.04209 0.85370 0.78268 0.81445 0.76508 1.19989 1.22669 1.21939 1.19305 0.90929 0.84975 1.40052 0.91796 1.42090 1.05795 0.99770 1.86655 1.21115 0.94388 0.87143 0.90675 1.21757 0.90611 0.99602 0.87930 1.45621 1.11243 1.71590 1.05590 1.18636 0.88196 0.76110 0.83332 1.90705 1.19965 1.53464 1.83082 1.19777 0.94218 1.08165 0.93054 1.21746 0.90828 0.94286 1.01586 1.21461 1.01395 0.99310 0.91224 1.21637 0.94077 0.93162 0.97646 1.17495 0.94263 1.05933 0.86627 1.22293 0.86818 0.98805 0.94494 1.70474 1.35208 1.25791 0.97749 1.27179 0.80592 0.92654 1.01024 1.48075 1.10240 1.55662 1.05417 0.69102 1.78233 1.21491 1.26751 0.90949 1.21099 0.99643 0.94427 0.91121 1.23341 0.97608 1.00128 0.97959 1.22555 0.96922 1.00198 0.96016 1.23114 0.99797 0.96806 0.96776 0.94174 0.78763 0.91061 0.95100 0.75465 0.83589 0.80885 0.82368 0.70263 0.86334 0.88895 0.93391 0.91869 0.89613 0.91061 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.10 13.07 21.65 0.28 -55.81 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 3 Si 0.95 46.70 29.55 68.60 2.03 48.73 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.22 -11.75 9.05 84.03 0.76 -10.99 16 8 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -32.18 5.19 -300.95 -1.56 -33.74 16 10 C 0.16 5.68 0.81 4.13 0.00 5.68 16 11 C 0.13 4.76 5.08 86.38 0.44 5.20 16 12 N -0.69 -24.19 5.37 -465.96 -2.50 -26.69 16 13 C 0.55 20.78 7.77 86.79 0.67 21.46 16 14 O -0.59 -26.68 16.34 -3.87 -0.06 -26.74 16 15 C -0.15 -4.72 5.87 -20.11 -0.12 -4.84 16 16 C -0.07 -1.59 9.54 22.56 0.22 -1.38 16 17 C -0.12 -2.26 10.02 22.20 0.22 -2.04 16 18 C -0.05 -0.97 9.68 22.53 0.22 -0.75 16 19 C -0.04 -1.11 5.87 -20.08 -0.12 -1.23 16 20 C 0.26 6.73 7.77 137.48 1.07 7.80 16 21 N -0.56 -11.61 10.81 -193.08 -2.09 -13.70 16 22 C 0.28 3.08 13.11 180.38 2.36 5.45 16 23 N -0.47 -6.54 7.44 -60.52 -0.45 -6.99 16 24 H 0.46 2.55 8.96 -213.10 -1.91 0.64 16 25 N -0.34 -8.93 12.42 -52.35 -0.65 -9.58 16 26 C -0.04 -1.33 9.22 22.75 0.21 -1.12 16 27 C -0.15 -4.92 7.28 31.12 0.23 -4.70 16 28 C -0.12 -3.37 7.99 31.12 0.25 -3.12 16 29 C -0.13 -3.50 7.04 31.12 0.22 -3.28 16 30 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.38 18.36 7.87 -92.71 -0.73 17.63 16 32 H 0.07 2.45 8.01 -2.39 -0.02 2.43 16 33 H 0.03 1.39 7.80 -2.38 -0.02 1.37 16 34 H 0.41 12.73 6.32 -92.70 -0.59 12.14 16 35 H 0.15 3.13 6.39 -2.91 -0.02 3.11 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.16 2.76 7.82 -2.91 -0.02 2.74 16 38 H 0.28 -0.72 8.06 -2.91 -0.02 -0.75 16 39 H 0.12 4.27 7.42 -2.91 -0.02 4.25 16 40 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 41 H 0.05 1.82 7.87 -2.39 -0.02 1.80 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 45 H 0.10 2.39 8.10 -2.39 -0.02 2.37 16 Total: -1.00 -80.33 384.34 -0.07 -80.40 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -2.16 Total: 35.15 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 7.10 Total: 8.99 kcal Atomic # 7 Polarization: -139.55 SS G_CDS: -6.97 Total: -146.52 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -80.33 -0.07 -80.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700136620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.898 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds