Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86804 * 119.99465 * 2 1 4 4 H 1.48498 * 109.47459 * 270.00107 * 3 2 1 5 5 H 1.48495 * 109.47026 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.46874 * 150.00002 * 3 2 1 7 7 C 1.38790 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00129 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00275 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00220 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00192 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00190 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47058 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.43542 * 305.70314 * 15 14 13 17 17 C 1.54266 * 110.48402 * 68.24296 * 15 14 13 18 18 C 1.54224 * 106.42656 * 142.38652 * 17 15 14 19 19 C 1.54264 * 106.63737 * 359.97438 * 18 17 15 20 20 H 1.09006 * 110.48110 * 95.07788 * 19 18 17 21 21 N 1.46891 * 110.60218 * 217.66923 * 19 18 17 22 22 C 1.46904 * 111.00269 * 269.84307 * 21 19 18 23 23 H 1.09003 * 110.42931 * 327.54195 * 22 21 19 24 24 C 1.54623 * 110.48984 * 204.99941 * 22 21 19 25 25 C 1.54478 * 101.76431 * 216.52421 * 24 22 21 26 26 N 1.46759 * 105.47613 * 25.41452 * 25 24 22 27 27 C 1.34417 * 111.29889 * 342.98520 * 26 25 24 28 28 O 1.21287 * 124.94224 * 180.43974 * 27 26 25 29 29 C 1.54891 * 110.48666 * 183.15989 * 15 14 13 30 30 H 0.96997 * 120.00322 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46954 * 59.99607 * 10 9 7 32 32 H 1.09001 * 109.46885 * 299.99918 * 10 9 7 33 33 H 0.97004 * 119.99368 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.47148 * 60.00625 * 14 13 11 35 35 H 1.08991 * 109.47257 * 299.99900 * 14 13 11 36 36 H 1.08998 * 110.03538 * 261.70399 * 17 15 14 37 37 H 1.09004 * 110.03276 * 23.13568 * 17 15 14 38 38 H 1.09009 * 110.00234 * 240.69061 * 18 17 15 39 39 H 1.08998 * 110.06034 * 119.30842 * 18 17 15 40 40 H 1.00900 * 111.00274 * 33.79573 * 21 19 18 41 41 H 1.09000 * 110.97023 * 334.64262 * 24 22 21 42 42 H 1.09001 * 110.97072 * 98.36754 * 24 22 21 43 43 H 1.09000 * 110.24725 * 144.41555 * 25 24 22 44 44 H 1.09001 * 110.24590 * 266.32778 * 25 24 22 45 45 H 0.96998 * 124.35319 * 162.98685 * 26 25 24 46 46 H 1.09000 * 110.75322 * 321.56340 * 29 15 14 47 47 H 1.09002 * 110.75658 * 84.93540 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0869 -2.9843 -0.0009 11 6 5.5733 -3.2322 -0.0008 12 8 6.3442 -2.2959 -0.0014 13 7 6.0461 -4.4943 -0.0001 14 6 7.4910 -4.7353 -0.0006 15 6 7.7568 -6.2421 0.0011 16 1 7.2363 -6.7194 0.8314 17 6 7.3224 -6.8684 -1.3401 18 6 8.3658 -7.9543 -1.6726 19 6 9.3937 -7.9461 -0.5224 20 1 9.1375 -8.6987 0.2235 21 7 10.7493 -8.1766 -1.0390 22 6 11.0679 -9.6105 -1.0603 23 1 10.5704 -10.1231 -0.2370 24 6 12.5973 -9.8263 -0.9871 25 6 12.7874 -11.0496 -1.9111 26 7 11.6526 -11.0178 -2.8413 27 6 10.6701 -10.2216 -2.3858 28 8 9.6174 -10.0226 -2.9544 29 6 9.2777 -6.5242 0.0806 30 1 -0.4850 0.8400 0.0004 31 1 3.6436 -3.4316 -0.8906 32 1 3.6443 -3.4312 0.8893 33 1 5.4294 -5.2432 0.0007 34 1 7.9343 -4.2876 0.8890 35 1 7.9335 -4.2889 -0.8910 36 1 6.3336 -7.3159 -1.2403 37 1 7.3115 -6.1080 -2.1211 38 1 8.8594 -7.7207 -2.6161 39 1 7.8832 -8.9296 -1.7354 40 1 10.8618 -7.7676 -1.9545 41 1 13.1326 -8.9588 -1.3732 42 1 12.9108 -10.0538 0.0318 43 1 13.7263 -10.9665 -2.4585 44 1 12.7722 -11.9696 -1.3268 45 1 11.6163 -11.5084 -3.6773 46 1 9.8359 -5.8042 -0.5178 47 1 9.6188 -6.5146 1.1159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707099062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -82.975877 kcal Electronic energy + Delta-G solvation = -26488.246872 eV Core-core repulsion = 22603.180375 eV Total energy + Delta-G solvation = -3885.066497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06136 -39.52936 -38.49664 -36.90563 -35.41622 -33.66162 -32.40892 -30.89358 -30.01832 -28.91354 -28.09409 -26.15035 -25.57249 -23.99792 -22.46831 -21.18206 -20.85755 -20.21844 -20.02633 -17.90847 -17.82939 -17.02355 -16.64131 -16.33386 -16.10706 -15.70375 -15.12206 -15.06713 -14.89881 -14.59947 -14.30884 -14.04879 -13.77522 -13.64889 -13.38337 -13.23044 -13.11275 -12.88351 -12.76395 -12.72882 -12.26421 -11.87345 -11.79537 -11.46135 -11.33440 -11.22478 -11.03468 -10.98149 -10.92262 -10.64380 -10.55216 -10.45647 -9.82646 -9.70802 -9.45468 -8.98184 -8.89949 -8.86333 -8.46325 -6.88168 -6.26081 -3.97499 2.00296 2.76359 2.81847 3.05011 3.33038 3.36498 3.49714 3.53455 3.72120 3.85976 3.94661 4.27229 4.34095 4.36147 4.40370 4.48571 4.61983 4.77162 4.78865 4.87372 4.95083 5.12632 5.13274 5.22970 5.25815 5.26703 5.32827 5.35844 5.42596 5.46589 5.60662 5.78501 5.79669 5.84942 5.88229 5.94350 6.05932 6.07749 6.17003 6.20736 6.42867 6.51976 6.62374 6.76180 7.68038 7.69430 7.97017 8.44550 8.56724 9.20236 10.83161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.001585 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.252098 B =17665.728820 C =18027.262171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.130 3.870 15 C -0.105 4.105 16 H 0.081 0.919 17 C -0.122 4.122 18 C -0.138 4.138 19 C 0.082 3.918 20 H 0.082 0.918 21 N -0.654 5.654 22 C 0.055 3.945 23 H 0.114 0.886 24 C -0.122 4.122 25 C 0.098 3.902 26 N -0.732 5.732 27 C 0.485 3.515 28 O -0.522 6.522 29 C -0.100 4.100 30 H 0.270 0.730 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.348 0.652 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.409 0.591 46 H 0.076 0.924 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.184 -26.846 -1.542 38.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.396 6.396 13 N -0.390 5.390 14 C 0.006 3.994 15 C -0.124 4.124 16 H 0.100 0.900 17 C -0.160 4.160 18 C -0.177 4.177 19 C -0.028 4.028 20 H 0.100 0.900 21 N -0.284 5.284 22 C -0.059 4.059 23 H 0.132 0.868 24 C -0.161 4.161 25 C -0.027 4.027 26 N -0.389 5.389 27 C 0.268 3.732 28 O -0.397 6.397 29 C -0.139 4.139 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.168 0.832 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.247 0.753 46 H 0.095 0.905 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 29.063 -24.881 -1.117 38.275 hybrid contribution -1.630 -1.395 -1.239 2.477 sum 27.433 -26.276 -2.355 38.059 Atomic orbital electron populations 1.69942 1.05914 1.27732 1.48182 1.24711 0.94444 0.98954 0.93185 0.86731 0.81908 0.83267 0.79926 1.19226 1.19959 1.15909 1.22330 0.88337 0.97537 1.58673 0.89410 1.84777 1.09191 1.00237 1.97421 1.23279 0.94198 1.04245 1.05757 1.20264 0.90520 0.82382 0.75312 1.90695 1.58807 1.42254 1.47870 1.45963 1.07616 1.07918 1.77485 1.21317 0.81358 0.94419 1.02275 1.22237 0.96920 0.94761 0.98518 0.90038 1.22294 0.98848 0.98062 0.96794 1.22854 0.97238 0.99339 0.98239 1.22568 0.86101 0.97828 0.96302 0.89964 1.60806 1.27003 1.09345 1.31241 1.22465 0.97464 0.90469 0.95523 0.86844 1.22679 0.94518 0.97879 1.01016 1.22141 0.89587 0.99204 0.91807 1.46269 1.19246 1.48997 1.24372 1.22012 0.83390 0.79086 0.88675 1.90803 1.23843 1.61576 1.63427 1.22410 0.94326 0.95754 1.01391 0.91974 0.88557 0.88513 0.76744 0.91606 0.91579 0.91781 0.91371 0.91577 0.91262 0.83242 0.89104 0.88708 0.90083 0.90876 0.75304 0.90544 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.09 27.74 -169.99 -4.71 17.38 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 10 C -0.12 -2.46 6.16 36.00 0.22 -2.24 16 11 C 0.53 9.69 7.85 -10.99 -0.09 9.60 16 12 O -0.52 -11.59 15.86 5.56 0.09 -11.50 16 13 N -0.74 -9.67 5.42 -60.30 -0.33 -9.99 16 14 C 0.13 1.49 4.99 -4.04 -0.02 1.47 16 15 C -0.11 -0.87 2.90 -88.96 -0.26 -1.13 16 16 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.12 -1.07 6.16 -25.43 -0.16 -1.23 16 18 C -0.14 -1.20 4.77 -25.43 -0.12 -1.32 16 19 C 0.08 0.58 3.18 -66.06 -0.21 0.37 16 20 H 0.08 0.56 7.44 -51.93 -0.39 0.17 16 21 N -0.65 -4.06 6.18 -98.02 -0.61 -4.67 16 22 C 0.05 0.28 3.26 -67.72 -0.22 0.05 16 23 H 0.11 0.53 7.44 -51.93 -0.39 0.14 16 24 C -0.12 -0.29 6.88 -25.10 -0.17 -0.47 16 25 C 0.10 0.16 7.78 -3.13 -0.02 0.13 16 26 N -0.73 -3.16 6.24 -59.20 -0.37 -3.53 16 27 C 0.48 3.50 7.76 -10.86 -0.08 3.42 16 28 O -0.52 -5.85 14.84 5.55 0.08 -5.77 16 29 C -0.10 -0.74 6.00 -24.74 -0.15 -0.89 16 30 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.40 4.18 8.38 -40.82 -0.34 3.83 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.07 0.66 7.01 -51.92 -0.36 0.30 16 39 H 0.07 0.70 7.41 -51.93 -0.38 0.32 16 40 H 0.35 2.39 7.78 -39.29 -0.31 2.09 16 41 H 0.09 0.25 8.09 -51.93 -0.42 -0.17 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 45 H 0.41 1.42 8.96 -40.82 -0.37 1.05 16 46 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -36.47 388.93 -9.84 -46.31 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.57 Total: 2.15 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.07 Total: -4.45 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.53 Total: -44.30 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.47 -9.84 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707099062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.661 kcal (2) G-P(sol) polarization free energy of solvation -36.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds