Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86804 * 119.99465 * 2 1 4 4 H 1.48498 * 109.47459 * 270.00107 * 3 2 1 5 5 H 1.48495 * 109.47026 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.46874 * 150.00002 * 3 2 1 7 7 C 1.38790 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00190 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00129 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00275 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00220 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00192 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00190 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47058 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.43542 * 305.70314 * 15 14 13 17 17 C 1.54266 * 110.48402 * 68.24296 * 15 14 13 18 18 C 1.54224 * 106.42656 * 142.38652 * 17 15 14 19 19 C 1.54264 * 106.63737 * 359.97438 * 18 17 15 20 20 H 1.09006 * 110.48110 * 95.07788 * 19 18 17 21 21 N 1.46891 * 110.60218 * 217.66923 * 19 18 17 22 22 C 1.46904 * 111.00269 * 269.84307 * 21 19 18 23 23 H 1.09003 * 110.42931 * 327.54195 * 22 21 19 24 24 C 1.54623 * 110.48984 * 204.99941 * 22 21 19 25 25 C 1.54478 * 101.76431 * 216.52421 * 24 22 21 26 26 N 1.46759 * 105.47613 * 25.41452 * 25 24 22 27 27 C 1.34417 * 111.29889 * 342.98520 * 26 25 24 28 28 O 1.21287 * 124.94224 * 180.43974 * 27 26 25 29 29 C 1.54891 * 110.48666 * 183.15989 * 15 14 13 30 30 H 0.96997 * 120.00322 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46954 * 59.99607 * 10 9 7 32 32 H 1.09001 * 109.46885 * 299.99918 * 10 9 7 33 33 H 0.97004 * 119.99368 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.47148 * 60.00625 * 14 13 11 35 35 H 1.08991 * 109.47257 * 299.99900 * 14 13 11 36 36 H 1.08998 * 110.03538 * 261.70399 * 17 15 14 37 37 H 1.09004 * 110.03276 * 23.13568 * 17 15 14 38 38 H 1.09009 * 110.00234 * 240.69061 * 18 17 15 39 39 H 1.08998 * 110.06034 * 119.30842 * 18 17 15 40 40 H 1.00900 * 111.00274 * 33.79573 * 21 19 18 41 41 H 1.09000 * 110.97023 * 334.64262 * 24 22 21 42 42 H 1.09001 * 110.97072 * 98.36754 * 24 22 21 43 43 H 1.09000 * 110.24725 * 144.41555 * 25 24 22 44 44 H 1.09001 * 110.24590 * 266.32778 * 25 24 22 45 45 H 0.96998 * 124.35319 * 162.98685 * 26 25 24 46 46 H 1.09000 * 110.75322 * 321.56340 * 29 15 14 47 47 H 1.09002 * 110.75658 * 84.93540 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0869 -2.9843 -0.0009 11 6 5.5733 -3.2322 -0.0008 12 8 6.3442 -2.2959 -0.0014 13 7 6.0461 -4.4943 -0.0001 14 6 7.4910 -4.7353 -0.0006 15 6 7.7568 -6.2421 0.0011 16 1 7.2363 -6.7194 0.8314 17 6 7.3224 -6.8684 -1.3401 18 6 8.3658 -7.9543 -1.6726 19 6 9.3937 -7.9461 -0.5224 20 1 9.1375 -8.6987 0.2235 21 7 10.7493 -8.1766 -1.0390 22 6 11.0679 -9.6105 -1.0603 23 1 10.5704 -10.1231 -0.2370 24 6 12.5973 -9.8263 -0.9871 25 6 12.7874 -11.0496 -1.9111 26 7 11.6526 -11.0178 -2.8413 27 6 10.6701 -10.2216 -2.3858 28 8 9.6174 -10.0226 -2.9544 29 6 9.2777 -6.5242 0.0806 30 1 -0.4850 0.8400 0.0004 31 1 3.6436 -3.4316 -0.8906 32 1 3.6443 -3.4312 0.8893 33 1 5.4294 -5.2432 0.0007 34 1 7.9343 -4.2876 0.8890 35 1 7.9335 -4.2889 -0.8910 36 1 6.3336 -7.3159 -1.2403 37 1 7.3115 -6.1080 -2.1211 38 1 8.8594 -7.7207 -2.6161 39 1 7.8832 -8.9296 -1.7354 40 1 10.8618 -7.7676 -1.9545 41 1 13.1326 -8.9588 -1.3732 42 1 12.9108 -10.0538 0.0318 43 1 13.7263 -10.9665 -2.4585 44 1 12.7722 -11.9696 -1.3268 45 1 11.6163 -11.5084 -3.6773 46 1 9.8359 -5.8042 -0.5178 47 1 9.6188 -6.5146 1.1159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707099062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -112.372622 kcal Electronic energy + Delta-G solvation = -26489.521611 eV Core-core repulsion = 22603.180375 eV Total energy + Delta-G solvation = -3886.341236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51840 -40.74833 -39.38617 -37.41159 -36.27320 -34.68289 -34.56439 -31.80075 -30.79852 -29.86933 -28.71581 -27.86009 -26.69823 -24.86872 -22.72379 -22.04141 -21.50259 -21.12198 -20.86064 -19.83317 -18.34127 -17.86244 -17.55199 -17.33977 -17.13462 -16.94907 -16.62526 -16.19122 -15.84964 -15.61169 -15.09677 -14.93290 -14.85881 -14.67403 -14.58033 -14.33645 -14.05662 -13.70299 -13.48295 -13.35487 -13.32933 -13.13411 -13.01062 -12.83781 -12.66994 -12.16929 -12.03412 -11.93499 -11.85533 -11.77843 -11.55704 -11.36974 -11.17266 -11.06232 -10.96620 -10.53998 -10.10700 -10.06645 -9.41023 -8.99825 -8.51685 -6.22701 0.99168 1.31522 1.46976 1.49263 1.56447 1.57729 2.23397 2.27873 2.43768 2.71882 2.86518 3.02990 3.45415 3.58346 3.64117 3.75183 3.90920 3.97575 4.08984 4.21547 4.22761 4.28725 4.36902 4.46743 4.49541 4.51911 4.57054 4.69832 4.74495 4.80597 4.85580 4.91208 5.08201 5.12595 5.14925 5.22337 5.28900 5.34075 5.44857 5.51296 5.70482 5.83576 6.00387 6.02367 6.10999 6.21270 6.48428 6.93447 7.20648 7.22630 8.60730 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.039192 B = 0.001585 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.252098 B =17665.728820 C =18027.262171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.112 4.112 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.711 5.711 14 C 0.131 3.869 15 C -0.092 4.092 16 H 0.098 0.902 17 C -0.121 4.121 18 C -0.128 4.128 19 C 0.088 3.912 20 H 0.091 0.909 21 N -0.651 5.651 22 C 0.054 3.946 23 H 0.121 0.879 24 C -0.114 4.114 25 C 0.096 3.904 26 N -0.726 5.726 27 C 0.473 3.527 28 O -0.572 6.572 29 C -0.095 4.095 30 H 0.277 0.723 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.343 0.657 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.411 0.589 46 H 0.069 0.931 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.553 -28.234 -0.539 41.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.263 4.263 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.364 5.364 14 C 0.007 3.993 15 C -0.111 4.111 16 H 0.116 0.884 17 C -0.159 4.159 18 C -0.168 4.168 19 C -0.022 4.022 20 H 0.109 0.891 21 N -0.280 5.280 22 C -0.060 4.060 23 H 0.138 0.862 24 C -0.152 4.152 25 C -0.027 4.027 26 N -0.381 5.381 27 C 0.258 3.742 28 O -0.451 6.451 29 C -0.133 4.133 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.250 0.750 46 H 0.088 0.912 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 31.471 -26.348 -0.105 41.044 hybrid contribution -2.298 -1.182 -1.594 3.037 sum 29.173 -27.530 -1.699 40.148 Atomic orbital electron populations 1.70018 1.07297 1.29031 1.49134 1.25563 0.95274 1.02252 0.92831 0.85861 0.80692 0.79572 0.80204 1.18753 1.18197 1.16072 1.22471 0.90280 0.96722 1.58326 0.92008 1.84697 1.06396 1.06250 1.97587 1.23278 0.96014 0.99588 1.07407 1.19955 0.89351 0.83461 0.75352 1.90685 1.59349 1.43882 1.50431 1.45767 1.08961 1.06637 1.75046 1.21447 0.79657 0.96514 1.01646 1.22157 0.97938 0.92335 0.98666 0.88380 1.22277 0.99236 0.97723 0.96674 1.22730 0.97470 0.98287 0.98271 1.22516 0.86161 0.97888 0.95656 0.89052 1.60868 1.26123 1.10212 1.30800 1.22603 0.99434 0.89496 0.94429 0.86180 1.22701 0.92121 0.98082 1.02341 1.22376 0.89175 0.99657 0.91531 1.46380 1.19321 1.47714 1.24680 1.22467 0.83104 0.79264 0.89363 1.90773 1.25962 1.63477 1.64915 1.22373 0.93309 0.95648 1.01998 0.91356 0.87038 0.86747 0.74811 0.91803 0.92703 0.91254 0.92801 0.93347 0.92782 0.83824 0.89357 0.86763 0.88222 0.89106 0.74991 0.91224 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.43 13.97 21.65 0.30 -56.13 16 2 C 0.05 2.75 5.50 84.85 0.47 3.21 16 3 Si 0.91 45.61 27.74 68.60 1.90 47.52 16 4 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 7 C -0.53 -31.39 10.04 67.95 0.68 -30.71 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 10 C -0.11 -4.32 6.16 71.23 0.44 -3.88 16 11 C 0.53 18.86 7.85 87.65 0.69 19.55 16 12 O -0.56 -24.81 15.86 -3.04 -0.05 -24.86 16 13 N -0.71 -17.34 5.42 -463.08 -2.51 -19.85 16 14 C 0.13 2.78 4.99 86.38 0.43 3.21 16 15 C -0.09 -1.34 2.90 -9.72 -0.03 -1.37 16 16 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 17 C -0.12 -2.02 6.16 31.44 0.19 -1.82 16 18 C -0.13 -2.23 4.77 31.44 0.15 -2.08 16 19 C 0.09 1.13 3.18 45.99 0.15 1.27 16 20 H 0.09 1.04 7.44 -2.38 -0.02 1.02 16 21 N -0.65 -7.33 6.18 -464.04 -2.87 -10.19 16 22 C 0.05 0.46 3.26 44.91 0.15 0.61 16 23 H 0.12 0.87 7.44 -2.39 -0.02 0.85 16 24 C -0.11 -0.25 6.88 31.65 0.22 -0.03 16 25 C 0.10 0.06 7.78 86.83 0.68 0.73 16 26 N -0.73 -5.39 6.24 -459.81 -2.87 -8.26 16 27 C 0.47 6.65 7.76 87.90 0.68 7.33 16 28 O -0.57 -13.30 14.84 -3.05 -0.05 -13.35 16 29 C -0.09 -1.22 6.00 31.89 0.19 -1.03 16 30 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 32 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 33 H 0.42 7.61 8.38 -92.71 -0.78 6.83 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.33 8.01 -2.39 -0.02 1.32 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.06 7.75 -2.38 -0.02 1.04 16 38 H 0.05 1.01 7.01 -2.38 -0.02 1.00 16 39 H 0.05 1.11 7.41 -2.39 -0.02 1.09 16 40 H 0.34 4.61 7.78 -89.69 -0.70 3.91 16 41 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 42 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.41 2.52 8.96 -92.71 -0.83 1.68 16 46 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.57 388.93 -3.44 -84.01 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -1.34 Total: 16.23 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.08 Total: -5.01 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -7.94 Total: -94.42 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.09 Total: -38.21 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -80.57 -3.44 -84.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707099062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.362 kcal (2) G-P(sol) polarization free energy of solvation -80.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds