Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99561 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.09010 * 109.47236 * 295.00193 * 15 14 13 17 17 N 1.46900 * 109.47153 * 54.99885 * 15 14 13 18 18 C 1.46905 * 111.00221 * 205.00201 * 17 15 14 19 19 H 1.09000 * 109.40157 * 325.00342 * 18 17 15 20 20 C 1.53072 * 109.40198 * 205.17151 * 18 17 15 21 21 C 1.53302 * 108.43248 * 190.87384 * 20 18 17 22 22 C 1.52916 * 108.61318 * 67.65114 * 21 20 18 23 23 N 1.45751 * 110.48592 * 309.23663 * 22 21 20 24 24 C 1.33356 * 124.10844 * 19.05002 * 23 22 21 25 25 O 1.21286 * 118.24048 * 177.80394 * 24 23 22 26 26 C 1.52995 * 109.47358 * 175.00485 * 15 14 13 27 27 C 1.53000 * 117.50410 * 128.62508 * 26 15 14 28 28 C 1.52996 * 117.50132 * 59.99729 * 26 15 14 29 29 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 31 31 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 32 32 H 0.96993 * 120.00373 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47217 * 300.00298 * 14 13 11 34 34 H 1.09005 * 109.47093 * 60.00385 * 14 13 11 35 35 H 1.00896 * 111.00143 * 81.04966 * 17 15 14 36 36 H 1.09003 * 109.67407 * 310.70632 * 20 18 17 37 37 H 1.08998 * 109.66745 * 71.23427 * 20 18 17 38 38 H 1.09001 * 109.64639 * 307.90239 * 21 20 18 39 39 H 1.09001 * 109.75454 * 187.46107 * 21 20 18 40 40 H 1.08996 * 109.30339 * 188.92192 * 22 21 20 41 41 H 1.09004 * 109.13167 * 69.43712 * 22 21 20 42 42 H 0.97006 * 117.94539 * 199.07128 * 23 22 21 43 43 H 1.09005 * 115.54794 * 274.32884 * 26 15 14 44 44 H 1.09000 * 117.49226 * 359.97438 * 27 26 15 45 45 H 1.08994 * 117.50270 * 145.02042 * 27 26 15 46 46 H 1.09005 * 117.49604 * 214.98053 * 28 26 15 47 47 H 1.08999 * 117.49846 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0011 14 6 7.4906 -4.7360 0.0016 15 6 7.7562 -6.2427 0.0012 16 1 7.3912 -6.6763 0.9324 17 7 7.0593 -6.8626 -1.1337 18 6 6.7792 -8.2802 -0.8690 19 1 7.5954 -8.7080 -0.2868 20 6 6.6543 -9.0305 -2.1973 21 6 6.0978 -10.4303 -1.9129 22 6 4.6533 -10.2925 -1.4303 23 7 4.5678 -9.3205 -0.3476 24 6 5.4982 -8.3993 -0.0944 25 8 5.2992 -7.6162 0.8101 26 6 9.2600 -6.4955 -0.1239 27 6 9.9066 -7.4319 0.8988 28 6 10.1655 -5.9256 0.9697 29 1 -0.4850 0.8401 -0.0004 30 1 3.6432 -3.4319 0.8906 31 1 3.6439 -3.4315 -0.8894 32 1 5.4289 -5.2436 0.0011 33 1 7.9338 -4.2891 -0.8883 34 1 7.9332 -4.2889 0.8917 35 1 7.5870 -6.7514 -1.9865 36 1 5.9768 -8.4925 -2.8604 37 1 7.6354 -9.1151 -2.6645 38 1 6.6969 -10.9129 -1.1407 39 1 6.1237 -11.0291 -2.8233 40 1 4.2983 -11.2598 -1.0749 41 1 4.0291 -9.9626 -2.2608 42 1 3.7850 -9.3454 0.2248 43 1 9.6504 -6.5145 -1.1414 44 1 9.2606 -7.8675 1.6611 45 1 10.7225 -8.0672 0.5543 46 1 11.1519 -5.5700 0.6717 47 1 9.6900 -5.3709 1.7786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713104307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = -80.484641 kcal Electronic energy + Delta-G solvation = -27760.559194 eV Core-core repulsion = 23875.600725 eV Total energy + Delta-G solvation = -3884.958469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50406 -40.58468 -39.20615 -37.41583 -36.23237 -35.30100 -34.68439 -32.81846 -31.50839 -29.98546 -28.00568 -27.71629 -24.94209 -24.36094 -23.26526 -23.19682 -21.71657 -21.21925 -20.06835 -19.78457 -18.25597 -17.87346 -17.48346 -17.32973 -17.18098 -17.03101 -16.53484 -16.37227 -15.79136 -15.44937 -15.32069 -15.09277 -14.97493 -14.89577 -14.75979 -14.51906 -14.24463 -13.95753 -13.41355 -13.35541 -13.17756 -13.01901 -12.91416 -12.68014 -12.51506 -12.33583 -12.19911 -12.04993 -11.86549 -11.76942 -11.42092 -11.17982 -11.09628 -10.92547 -10.70675 -10.56669 -10.02156 -9.96680 -9.46589 -9.01057 -8.52566 -6.23807 0.97319 1.31238 1.46421 1.55711 1.58997 1.66981 2.23975 2.29825 2.38271 2.70123 2.83803 2.85207 3.04831 3.63119 3.66234 3.82163 3.90718 3.92707 3.96261 4.02880 4.11974 4.17023 4.22573 4.33643 4.37117 4.42140 4.43244 4.57124 4.67145 4.77438 4.82013 4.87935 4.89421 5.01934 5.06220 5.07828 5.18911 5.23960 5.33875 5.49192 5.69768 5.82978 5.91892 6.09682 6.33948 6.49820 6.55281 6.91929 7.22106 7.33416 8.60335 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.002738 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.829245 B =10223.675437 C =11932.435736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.236 1.236 6 H -0.255 1.255 7 C -0.532 4.532 8 H 0.058 0.942 9 S -0.165 6.165 10 C -0.110 4.110 11 C 0.530 3.470 12 O -0.566 6.566 13 N -0.698 5.698 14 C 0.137 3.863 15 C 0.121 3.879 16 H 0.081 0.919 17 N -0.672 5.672 18 C 0.083 3.917 19 H 0.089 0.911 20 C -0.122 4.122 21 C -0.129 4.129 22 C 0.101 3.899 23 N -0.718 5.718 24 C 0.514 3.486 25 O -0.590 6.590 26 C -0.181 4.181 27 C -0.165 4.165 28 C -0.181 4.181 29 H 0.278 0.722 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.363 0.637 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.464 -29.778 -5.806 36.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.160 1.160 6 H -0.179 1.179 7 C -0.680 4.680 8 H 0.076 0.924 9 S 0.061 5.939 10 C -0.261 4.261 11 C 0.315 3.685 12 O -0.445 6.445 13 N -0.350 5.350 14 C 0.013 3.987 15 C 0.011 3.989 16 H 0.099 0.901 17 N -0.306 5.306 18 C -0.030 4.030 19 H 0.106 0.894 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.023 4.023 23 N -0.369 5.369 24 C 0.300 3.700 25 O -0.470 6.470 26 C -0.201 4.201 27 C -0.202 4.202 28 C -0.219 4.219 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.143 0.857 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.041 -27.576 -5.329 35.094 hybrid contribution -1.194 -0.913 0.447 1.568 sum 19.847 -28.490 -4.882 35.063 Atomic orbital electron populations 1.70025 1.07333 1.29103 1.49103 1.25599 0.95337 1.02341 0.92724 0.85830 0.80687 0.79306 0.80312 1.18626 1.16009 1.17929 1.22472 0.90339 0.96681 1.58475 0.92408 1.84554 1.06307 1.05491 1.97541 1.23233 0.96369 0.99885 1.06596 1.19908 0.89272 0.83516 0.75769 1.90653 1.59117 1.43676 1.51093 1.45688 1.09031 1.06460 1.73836 1.21318 0.79970 0.95983 1.01414 1.21284 0.90273 0.92220 0.95128 0.90069 1.60061 1.51893 1.13091 1.05555 1.21350 0.93827 0.89683 0.98137 0.89378 1.21870 1.04019 0.95651 0.94457 1.21869 0.94433 0.96698 1.03758 1.21673 0.98795 0.92378 0.89417 1.45619 1.22978 1.34033 1.34285 1.20690 0.86222 0.79409 0.83643 1.90717 1.79648 1.42591 1.34059 1.23031 0.93262 1.06653 0.97147 1.23050 1.03220 0.92879 1.01048 1.22960 1.01184 0.96833 1.00920 0.91271 0.88072 0.87543 0.74874 0.91822 0.92436 0.81449 0.90637 0.88352 0.90548 0.87061 0.88502 0.91044 0.76669 0.85680 0.89514 0.86871 0.87466 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.87 13.97 21.65 0.30 -57.57 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.92 46.76 27.74 68.60 1.90 48.66 16 4 H -0.26 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.24 -12.04 6.74 99.48 0.67 -11.36 16 6 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.53 -32.90 10.04 67.95 0.68 -32.22 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -9.04 18.55 -56.49 -1.05 -10.08 16 10 C -0.11 -4.87 6.16 71.24 0.44 -4.43 16 11 C 0.53 21.75 7.85 87.66 0.69 22.44 16 12 O -0.57 -26.90 15.86 -3.04 -0.05 -26.94 16 13 N -0.70 -22.40 5.39 -463.05 -2.50 -24.90 16 14 C 0.14 3.59 5.14 86.38 0.44 4.03 16 15 C 0.12 2.23 1.88 44.91 0.08 2.32 16 16 H 0.08 1.87 6.26 -2.38 -0.01 1.86 16 17 N -0.67 -10.33 5.39 -474.03 -2.56 -12.89 16 18 C 0.08 1.02 2.59 44.03 0.11 1.13 16 19 H 0.09 0.97 7.62 -2.39 -0.02 0.95 16 20 C -0.12 -0.70 5.28 30.72 0.16 -0.54 16 21 C -0.13 -0.35 6.02 30.67 0.18 -0.16 16 22 C 0.10 0.55 7.16 86.49 0.62 1.17 16 23 N -0.72 -9.54 5.45 -467.33 -2.55 -12.09 16 24 C 0.51 9.73 7.44 87.71 0.65 10.38 16 25 O -0.59 -16.65 14.96 -3.05 -0.05 -16.69 16 26 C -0.18 -2.31 4.98 -10.80 -0.05 -2.36 16 27 C -0.17 -1.85 10.15 30.60 0.31 -1.54 16 28 C -0.18 -2.55 9.79 30.59 0.30 -2.25 16 29 H 0.28 16.10 8.31 -92.70 -0.77 15.33 16 30 H 0.10 4.34 8.14 -2.40 -0.02 4.33 16 31 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 32 H 0.41 12.95 7.25 -92.71 -0.67 12.28 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.63 7.47 -2.38 -0.02 1.61 16 35 H 0.36 4.09 7.96 -89.70 -0.71 3.38 16 36 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 37 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.08 0.19 8.12 -2.39 -0.02 0.17 16 39 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.40 5.51 8.80 -92.70 -0.82 4.69 16 43 H 0.13 1.18 7.93 -2.38 -0.02 1.16 16 44 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 Total: -1.00 -82.27 393.10 -2.67 -84.94 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -1.23 Total: 26.35 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.09 Total: 1.21 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -7.29 Total: -107.44 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.09 Total: -43.63 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.08 kcal Total: -82.27 -2.67 -84.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713104307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.453 kcal (2) G-P(sol) polarization free energy of solvation -82.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds