Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47020 * 269.99796 * 3 2 1 5 5 H 1.48499 * 109.47139 * 30.00348 * 3 2 1 6 6 H 1.48508 * 109.46826 * 150.00144 * 3 2 1 7 7 C 1.38807 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00312 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00538 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46512 * 325.00334 * 10 9 7 12 12 C 1.52998 * 109.47365 * 204.99933 * 10 9 7 13 13 N 1.46502 * 109.47012 * 54.99739 * 12 10 9 14 14 C 1.34779 * 119.99821 * 180.02562 * 13 12 10 15 15 O 1.21612 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.47290 * 119.99729 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.80813 * 0.02562 * 16 14 13 18 18 N 1.34163 * 107.88728 * 179.75321 * 17 16 14 19 19 H 0.96992 * 125.16697 * 180.25085 * 18 17 16 20 20 N 1.39776 * 109.67066 * 0.23428 * 18 17 16 21 21 C 1.31359 * 109.07861 * 359.97438 * 20 18 17 22 22 C 1.48301 * 126.50896 * 180.02562 * 21 20 18 23 23 C 1.39800 * 120.54358 * 324.98172 * 22 21 20 24 24 C 1.38403 * 118.30977 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.28589 * 359.97438 * 24 23 22 26 26 N 1.31889 * 121.04134 * 0.02562 * 25 24 23 27 27 C 1.31742 * 121.85445 * 359.71434 * 26 25 24 28 28 C 1.53000 * 109.47006 * 84.99709 * 10 9 7 29 29 C 1.52997 * 117.50181 * 8.75117 * 28 10 9 30 30 C 1.52995 * 117.50051 * 300.09167 * 28 10 9 31 31 H 0.97006 * 120.00053 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00134 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47315 * 295.00176 * 12 10 9 34 34 H 1.08992 * 109.47032 * 174.99695 * 12 10 9 35 35 H 0.96994 * 119.99991 * 359.97438 * 13 12 10 36 36 H 1.08002 * 126.06078 * 0.02778 * 17 16 14 37 37 H 1.07999 * 120.84683 * 359.95394 * 23 22 21 38 38 H 1.08000 * 120.35925 * 180.02562 * 24 23 22 39 39 H 1.08004 * 119.48201 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.71047 * 180.26944 * 27 26 25 41 41 H 1.08999 * 115.54941 * 154.42143 * 28 10 9 42 42 H 1.09005 * 117.49872 * 0.02562 * 29 28 10 43 43 H 1.09003 * 117.50092 * 145.01674 * 29 28 10 44 44 H 1.09005 * 117.50104 * 214.98358 * 30 28 10 45 45 H 1.08997 * 117.50099 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0022 11 1 3.5650 -3.2068 0.5869 12 6 5.4996 -2.2593 0.6070 13 7 5.3626 -1.6650 1.9390 14 6 6.4608 -1.3873 2.6693 15 8 7.5655 -1.6297 2.2223 16 6 6.3230 -0.7904 4.0087 17 6 5.1467 -0.4602 4.6495 18 7 5.4606 0.0510 5.8495 19 1 4.8209 0.3626 6.5086 20 7 6.8495 0.0661 6.0058 21 6 7.4086 -0.4274 4.9245 22 6 8.8620 -0.5909 4.6788 23 6 9.7758 0.3440 5.1740 24 6 11.1215 0.1458 4.9179 25 6 11.5154 -0.9608 4.1876 26 7 10.6299 -1.8261 3.7331 27 6 9.3395 -1.6823 3.9558 28 6 4.2577 -2.9744 -1.4396 29 6 3.8367 -2.0282 -2.5658 30 6 2.9739 -3.2461 -2.2264 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 6.0785 -1.5914 -0.0309 34 1 6.0110 -3.2183 0.6879 35 1 4.4815 -1.4707 2.2951 36 1 4.1496 -0.5939 4.2567 37 1 9.4403 1.1993 5.7417 38 1 11.8561 0.8472 5.2851 39 1 12.5646 -1.1183 3.9855 40 1 8.6450 -2.4144 3.5710 41 1 5.1093 -3.6292 -1.6244 42 1 3.4564 -1.0466 -2.2826 43 1 4.4112 -2.0606 -3.4916 44 1 2.9811 -4.0795 -2.9290 45 1 2.0257 -3.0666 -1.7198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713121360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 121.075698 kcal Electronic energy + Delta-G solvation = -29099.391403 eV Core-core repulsion = 25120.022046 eV Total energy + Delta-G solvation = -3979.369357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39381 -39.84313 -39.11956 -37.69594 -34.65950 -33.56787 -33.31155 -32.00543 -31.47256 -30.51518 -30.12986 -28.34988 -24.38668 -24.06764 -23.58383 -22.96625 -22.17031 -21.50772 -20.49585 -19.95242 -19.28655 -18.69681 -17.61135 -17.12869 -16.40780 -16.17274 -15.71453 -15.54814 -15.39948 -14.99591 -14.81156 -14.39250 -14.17093 -14.00809 -13.77970 -13.46844 -13.31527 -13.12812 -12.94613 -12.73938 -12.48845 -11.96319 -11.57787 -11.28423 -11.19816 -11.03190 -10.85483 -10.61454 -10.55967 -10.30509 -9.90229 -9.68578 -9.64398 -9.54705 -9.49186 -9.24852 -9.12535 -9.08076 -8.74669 -8.56665 -7.44914 -5.91166 -3.28062 0.72024 1.25991 1.36948 2.13888 2.43808 3.24321 3.29690 3.35718 3.41933 3.50437 3.84101 4.07109 4.40419 4.44664 4.50731 4.58042 4.76840 4.89700 4.92292 5.05822 5.18303 5.22134 5.25316 5.31723 5.38939 5.43838 5.65153 5.73341 5.78803 5.84779 5.89090 5.93617 5.99157 6.11150 6.17123 6.27629 6.35328 6.54389 6.59789 6.66359 6.79251 6.84945 6.98057 7.10422 7.22337 7.81183 7.85669 7.98731 8.27281 8.46850 9.05249 9.77334 9.96928 11.26380 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.003237 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.548112 B = 8648.495058 C = 9973.052068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.744 5.744 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.118 3.882 13 N -0.712 5.712 14 C 0.588 3.412 15 O -0.545 6.545 16 C -0.279 4.279 17 C 0.116 3.884 18 N -0.462 5.462 19 H 0.445 0.555 20 N -0.284 5.284 21 C 0.173 3.827 22 C -0.080 4.080 23 C -0.047 4.047 24 C -0.189 4.189 25 C 0.106 3.894 26 N -0.488 5.488 27 C 0.168 3.832 28 C -0.178 4.178 29 C -0.165 4.165 30 C -0.170 4.170 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.195 0.805 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.835 -1.509 10.620 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.706 3.294 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.387 5.387 10 C 0.088 3.912 11 H 0.084 0.916 12 C -0.006 4.006 13 N -0.363 5.363 14 C 0.376 3.624 15 O -0.425 6.425 16 C -0.294 4.294 17 C -0.034 4.034 18 N -0.167 5.167 19 H 0.290 0.710 20 N -0.105 5.105 21 C 0.003 3.997 22 C -0.084 4.084 23 C -0.074 4.074 24 C -0.209 4.209 25 C -0.051 4.051 26 N -0.197 5.197 27 C 0.009 3.991 28 C -0.199 4.199 29 C -0.203 4.203 30 C -0.207 4.207 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.242 0.758 36 H 0.211 0.789 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.799 -1.967 10.971 19.335 hybrid contribution -0.927 2.174 0.017 2.363 sum 14.873 0.207 10.989 18.493 Atomic orbital electron populations 1.69688 1.05070 1.25859 1.57022 1.24632 0.95079 0.96908 1.01960 0.86708 0.79128 0.85406 0.78148 1.21023 1.21924 1.20287 1.19015 0.80314 0.94558 1.43410 0.88877 1.42870 1.04114 1.01868 1.89846 1.19975 0.89717 0.89406 0.92145 0.91590 1.21641 0.98346 0.98243 0.82409 1.45834 1.08989 1.63391 1.18060 1.17127 0.84547 0.77544 0.83230 1.90719 1.25099 1.54806 1.71894 1.21336 0.91353 1.17949 0.98760 1.23239 1.00245 0.93617 0.86305 1.45937 1.06035 1.49821 1.14929 0.70975 1.77295 0.87410 1.24259 1.21547 1.21549 0.92531 0.95374 0.90215 1.18701 0.88505 0.98437 1.02756 1.21607 0.92704 0.97586 0.95468 1.21993 0.96193 1.00227 1.02497 1.22916 0.99631 0.89990 0.92559 1.67855 1.02632 1.29358 1.19855 1.23518 0.91650 0.95156 0.88736 1.22998 0.98328 1.03614 0.94980 1.22839 1.03230 0.97108 0.97086 1.22895 0.96402 0.98683 1.02727 0.92989 0.80353 0.91581 0.91126 0.75833 0.78859 0.84795 0.84727 0.82862 0.80559 0.89246 0.87290 0.91068 0.90851 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.73 13.97 55.49 0.78 -25.95 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 20.25 27.73 -169.99 -4.71 15.53 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 7 C -0.24 -5.84 8.64 -15.06 -0.13 -5.97 16 8 H 0.09 2.44 7.14 -52.48 -0.37 2.07 16 9 N -0.74 -14.71 2.88 -53.43 -0.15 -14.87 16 10 C 0.20 3.26 2.86 -67.93 -0.19 3.06 16 11 H 0.07 1.11 8.08 -51.93 -0.42 0.70 16 12 C 0.12 1.76 5.22 -4.04 -0.02 1.74 16 13 N -0.71 -10.24 5.38 -61.43 -0.33 -10.57 16 14 C 0.59 8.91 7.69 -12.58 -0.10 8.82 16 15 O -0.55 -9.48 12.45 5.27 0.07 -9.42 16 16 C -0.28 -3.76 6.27 -102.95 -0.65 -4.40 16 17 C 0.12 1.21 11.50 -16.63 -0.19 1.02 16 18 N -0.46 -4.41 7.20 30.81 0.22 -4.19 16 19 H 0.45 2.62 8.96 -182.85 -1.64 0.98 16 20 N -0.28 -3.55 12.64 34.57 0.44 -3.12 16 21 C 0.17 2.38 6.96 -80.56 -0.56 1.82 16 22 C -0.08 -1.10 5.75 -104.76 -0.60 -1.70 16 23 C -0.05 -0.54 9.92 -38.94 -0.39 -0.92 16 24 C -0.19 -1.87 10.10 -39.49 -0.40 -2.27 16 25 C 0.11 1.17 11.17 -17.50 -0.20 0.98 16 26 N -0.49 -6.95 10.35 -12.96 -0.13 -7.09 16 27 C 0.17 2.47 8.97 -17.18 -0.15 2.31 16 28 C -0.18 -2.85 5.70 -90.62 -0.52 -3.37 16 29 C -0.17 -2.89 9.74 -26.70 -0.26 -3.15 16 30 C -0.17 -2.92 9.87 -26.70 -0.26 -3.19 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.36 7.43 5.66 -40.82 -0.23 7.20 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.41 5.58 7.09 -40.82 -0.29 5.29 16 36 H 0.19 1.50 7.48 -52.49 -0.39 1.11 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.18 2.75 5.65 -52.49 -0.30 2.45 16 41 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 42 H 0.11 2.22 6.69 -51.93 -0.35 1.88 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.11 2.17 6.22 -51.93 -0.32 1.85 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -31.86 375.32 -9.75 -41.61 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -6.86 Total: 17.45 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.71 Total: -5.05 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 0.82 Total: -65.78 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.86 -9.75 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713121360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.686 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds