Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99608 * 2 1 4 4 H 1.48496 * 109.46800 * 269.99754 * 3 2 1 5 5 H 1.48503 * 109.46904 * 30.00053 * 3 2 1 6 6 H 1.48494 * 109.46661 * 149.99836 * 3 2 1 7 7 C 1.38806 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00035 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47239 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91277 * 51.09761 * 11 10 9 13 13 C 1.55150 * 111.00630 * 174.99527 * 11 10 9 14 14 C 1.54323 * 102.94460 * 153.57401 * 13 11 10 15 15 N 1.47028 * 107.26860 * 337.81277 * 14 13 11 16 16 C 1.34777 * 125.64850 * 178.90280 * 15 14 13 17 17 O 1.21568 * 120.00170 * 185.77842 * 16 15 14 18 18 C 1.47694 * 119.99925 * 5.77387 * 16 15 14 19 19 C 1.39692 * 120.07589 * 172.87454 * 18 16 15 20 20 C 1.37743 * 119.91473 * 180.02562 * 19 18 16 21 21 C 1.39030 * 120.08197 * 0.02562 * 20 19 18 22 22 N 1.39930 * 119.91917 * 179.97438 * 21 20 19 23 23 C 1.36310 * 126.86565 * 180.29331 * 22 21 20 24 24 C 1.34968 * 106.77990 * 180.18157 * 23 22 21 25 25 N 1.33374 * 109.01426 * 359.57291 * 24 23 22 26 26 N 1.28771 * 109.92564 * 0.26797 * 25 24 23 27 27 C 1.39022 * 120.15591 * 0.24979 * 21 20 19 28 28 C 1.37741 * 120.08377 * 359.48822 * 27 21 20 29 29 C 1.47422 * 108.70109 * 359.16236 * 15 14 13 30 30 H 0.96996 * 120.00602 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99703 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47305 * 59.99429 * 10 9 7 33 33 H 1.09011 * 109.46899 * 299.99773 * 10 9 7 34 34 H 1.08999 * 110.71977 * 35.21507 * 13 11 10 35 35 H 1.09000 * 110.87820 * 272.00907 * 13 11 10 36 36 H 1.08997 * 109.88983 * 218.39342 * 14 13 11 37 37 H 1.08995 * 110.00894 * 97.29443 * 14 13 11 38 38 H 1.07998 * 120.04295 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.95726 * 180.02562 * 20 19 18 40 40 H 1.08002 * 126.61312 * 0.02562 * 23 22 21 41 41 H 1.08002 * 125.48967 * 179.84187 * 24 23 22 42 42 H 1.08008 * 119.95459 * 179.72638 * 27 21 20 43 43 H 1.07999 * 120.04071 * 180.24935 * 28 27 21 44 44 H 1.09005 * 110.36560 * 142.74021 * 29 15 14 45 45 H 1.08995 * 110.36888 * 265.06054 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0008 12 1 0.3260 -4.7002 -0.7925 13 6 1.7995 -6.1801 -0.1244 14 6 0.8244 -7.1642 0.5554 15 7 -0.0345 -6.3776 1.4529 16 6 -1.0328 -6.8679 2.2141 17 8 -1.7479 -6.1102 2.8405 18 6 -1.2580 -8.3257 2.2872 19 6 -2.1917 -8.8456 3.1869 20 6 -2.3987 -10.2058 3.2526 21 6 -1.6794 -11.0610 2.4255 22 7 -1.8920 -12.4423 2.4955 23 6 -1.2659 -13.4044 1.7604 24 6 -1.7804 -14.5895 2.1508 25 7 -2.6891 -14.3761 3.1034 26 7 -2.7884 -13.1143 3.3405 27 6 -0.7453 -10.5475 1.5330 28 6 -0.5368 -9.1880 1.4579 29 6 0.3731 -4.9629 1.3774 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6842 -3.7140 0.8920 33 1 2.6855 -3.7148 -0.8879 34 1 2.7520 -6.1536 0.4049 35 1 1.9487 -6.4461 -1.1709 36 1 1.3834 -7.9025 1.1303 37 1 0.2146 -7.6645 -0.1968 38 1 -2.7505 -8.1819 3.8300 39 1 -3.1206 -10.6084 3.9476 40 1 -0.5066 -13.2483 1.0084 41 1 -1.4982 -15.5553 1.7584 42 1 -0.1851 -11.2151 0.8950 43 1 0.1861 -8.7895 0.7615 44 1 -0.5002 -4.3130 1.4334 45 1 1.0745 -4.7269 2.1776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713361097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 138.939490 kcal Electronic energy + Delta-G solvation = -27958.564310 eV Core-core repulsion = 23979.969585 eV Total energy + Delta-G solvation = -3978.594725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.69916 -40.83532 -39.14173 -37.69129 -35.09970 -34.68962 -32.66567 -31.83728 -31.13429 -30.63873 -30.27875 -28.78320 -26.11260 -24.95902 -24.08247 -23.61010 -22.32118 -21.97240 -21.49925 -20.35949 -20.04043 -18.95007 -17.78202 -17.03660 -16.47338 -16.35474 -16.01074 -15.68006 -15.55544 -15.00677 -14.70805 -14.60978 -14.52652 -14.15719 -13.91190 -13.54570 -13.48816 -13.39316 -13.15094 -12.77455 -12.65514 -12.39777 -12.22451 -11.95463 -11.70943 -11.56425 -11.47111 -11.10882 -10.90749 -10.69336 -10.63544 -10.50834 -10.08467 -10.03240 -9.95576 -9.71658 -9.66860 -9.00564 -8.91202 -8.70249 -6.96504 -5.78595 -3.08473 -0.21201 0.72699 1.12804 1.57524 2.03050 2.56440 2.79739 3.38018 3.42283 3.47238 3.49436 3.80776 3.90941 4.12587 4.20196 4.32506 4.43979 4.48065 4.54689 4.65047 4.69650 4.73478 4.79999 4.93951 5.01352 5.09476 5.21897 5.35646 5.44124 5.48674 5.54899 5.56021 5.71325 5.76430 5.80548 5.85422 5.87880 5.95671 6.02849 6.14338 6.29237 6.31430 6.35603 6.62378 6.74577 7.37740 7.59837 7.67081 8.00730 8.39411 9.50801 10.07093 10.41121 11.43941 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001789 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.517275 B =15643.739124 C =16303.106638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.088 3.912 15 N -0.611 5.611 16 C 0.568 3.432 17 O -0.528 6.528 18 C -0.121 4.121 19 C -0.038 4.038 20 C -0.116 4.116 21 C 0.155 3.845 22 N -0.319 5.319 23 C 0.023 3.977 24 C -0.072 4.072 25 N -0.231 5.231 26 N -0.060 5.060 27 C -0.134 4.134 28 C -0.102 4.102 29 C 0.114 3.886 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.138 0.862 43 H 0.176 0.824 44 H 0.087 0.913 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -29.449 0.321 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.105 0.895 13 C -0.166 4.166 14 C -0.035 4.035 15 N -0.344 5.344 16 C 0.357 3.643 17 O -0.405 6.405 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.136 4.136 21 C 0.063 3.937 22 N -0.100 5.100 23 C -0.127 4.127 24 C -0.227 4.227 25 N -0.101 5.101 26 N -0.038 5.038 27 C -0.155 4.155 28 C -0.120 4.120 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.214 0.786 41 H 0.209 0.791 42 H 0.156 0.844 43 H 0.192 0.808 44 H 0.105 0.895 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.199 -28.848 1.835 28.907 hybrid contribution 0.975 0.753 -0.902 1.527 sum 0.775 -28.095 0.933 28.121 Atomic orbital electron populations 1.69655 1.05123 1.25767 1.57382 1.24755 0.95513 0.97751 1.02815 0.86190 0.78650 0.83837 0.77489 1.21715 1.21745 1.20756 1.19201 0.91014 0.84109 1.43141 0.91144 1.42367 1.05897 0.99917 1.89574 1.20582 0.92679 0.84776 0.98256 1.22561 0.98508 0.94754 0.96671 0.89517 1.22729 0.98266 0.94298 1.01341 1.22561 0.92895 0.95115 0.92913 1.48432 1.32767 1.10327 1.42860 1.17780 0.79750 0.87368 0.79446 1.90835 1.45536 1.59332 1.44830 1.20127 0.99472 0.93495 0.99372 1.21251 0.94563 0.94106 0.95802 1.20915 1.00516 0.92518 0.99631 1.17834 0.98563 0.78430 0.98919 1.48064 1.28538 1.05720 1.27710 1.23618 1.00911 0.88456 0.99674 1.23307 0.99629 0.99620 1.00134 1.74375 1.14885 1.08190 1.12643 1.82172 1.10596 0.98448 1.12607 1.20853 0.98849 0.96271 0.99562 1.22733 0.98775 0.92108 0.98406 1.22382 1.00367 0.80183 0.97759 0.93428 0.78192 0.95991 0.95740 0.90008 0.89647 0.90469 0.90427 0.83192 0.83557 0.78567 0.79133 0.84392 0.80795 0.89459 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.84 5.55 -59.91 -0.33 -18.17 16 10 C 0.17 3.00 5.72 -4.04 -0.02 2.98 16 11 C -0.11 -1.48 3.03 -88.59 -0.27 -1.75 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16 14 C 0.09 0.72 4.87 -3.06 -0.01 0.70 16 15 N -0.61 -7.69 3.33 -176.55 -0.59 -8.28 16 16 C 0.57 7.92 7.80 -12.40 -0.10 7.83 16 17 O -0.53 -9.56 16.59 5.31 0.09 -9.47 16 18 C -0.12 -1.26 5.87 -104.95 -0.62 -1.88 16 19 C -0.04 -0.38 9.58 -39.22 -0.38 -0.75 16 20 C -0.12 -1.04 9.66 -39.47 -0.38 -1.42 16 21 C 0.16 1.28 6.70 -83.58 -0.56 0.72 16 22 N -0.32 -2.74 3.85 -10.50 -0.04 -2.78 16 23 C 0.02 0.13 10.92 -16.72 -0.18 -0.06 16 24 C -0.07 -0.47 11.86 -18.04 -0.21 -0.68 16 25 N -0.23 -2.40 12.33 30.09 0.37 -2.03 16 26 N -0.06 -0.67 13.15 60.35 0.79 0.13 16 27 C -0.13 -0.82 9.46 -39.47 -0.37 -1.20 16 28 C -0.10 -0.74 8.60 -39.22 -0.34 -1.08 16 29 C 0.11 1.74 6.35 -2.65 -0.02 1.73 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 9.96 7.67 -40.82 -0.31 9.64 16 32 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 33 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.46 6.73 -51.93 -0.35 0.11 16 37 H 0.08 0.49 6.73 -51.93 -0.35 0.14 16 38 H 0.15 1.50 7.66 -52.49 -0.40 1.10 16 39 H 0.15 1.25 7.72 -52.49 -0.41 0.84 16 40 H 0.20 0.18 7.16 -52.49 -0.38 -0.19 16 41 H 0.19 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.38 6.82 -52.48 -0.36 0.02 16 43 H 0.18 0.92 2.73 -58.59 -0.16 0.76 16 44 H 0.09 1.59 7.99 -51.93 -0.41 1.18 16 45 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -36.03 374.81 -7.83 -43.86 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.61 Total: 4.71 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.87 Total: -3.46 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.93 Total: -58.46 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.03 -7.83 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713361097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.801 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds