Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99608 * 2 1 4 4 H 1.48496 * 109.46800 * 269.99754 * 3 2 1 5 5 H 1.48503 * 109.46904 * 30.00053 * 3 2 1 6 6 H 1.48494 * 109.46661 * 149.99836 * 3 2 1 7 7 C 1.38806 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00035 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47239 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91277 * 51.09761 * 11 10 9 13 13 C 1.55150 * 111.00630 * 174.99527 * 11 10 9 14 14 C 1.54323 * 102.94460 * 153.57401 * 13 11 10 15 15 N 1.47028 * 107.26860 * 337.81277 * 14 13 11 16 16 C 1.34777 * 125.64850 * 178.90280 * 15 14 13 17 17 O 1.21568 * 120.00170 * 185.77842 * 16 15 14 18 18 C 1.47694 * 119.99925 * 5.77387 * 16 15 14 19 19 C 1.39692 * 120.07589 * 172.87454 * 18 16 15 20 20 C 1.37743 * 119.91473 * 180.02562 * 19 18 16 21 21 C 1.39030 * 120.08197 * 0.02562 * 20 19 18 22 22 N 1.39930 * 119.91917 * 179.97438 * 21 20 19 23 23 C 1.36310 * 126.86565 * 180.29331 * 22 21 20 24 24 C 1.34968 * 106.77990 * 180.18157 * 23 22 21 25 25 N 1.33374 * 109.01426 * 359.57291 * 24 23 22 26 26 N 1.28771 * 109.92564 * 0.26797 * 25 24 23 27 27 C 1.39022 * 120.15591 * 0.24979 * 21 20 19 28 28 C 1.37741 * 120.08377 * 359.48822 * 27 21 20 29 29 C 1.47422 * 108.70109 * 359.16236 * 15 14 13 30 30 H 0.96996 * 120.00602 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99703 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47305 * 59.99429 * 10 9 7 33 33 H 1.09011 * 109.46899 * 299.99773 * 10 9 7 34 34 H 1.08999 * 110.71977 * 35.21507 * 13 11 10 35 35 H 1.09000 * 110.87820 * 272.00907 * 13 11 10 36 36 H 1.08997 * 109.88983 * 218.39342 * 14 13 11 37 37 H 1.08995 * 110.00894 * 97.29443 * 14 13 11 38 38 H 1.07998 * 120.04295 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.95726 * 180.02562 * 20 19 18 40 40 H 1.08002 * 126.61312 * 0.02562 * 23 22 21 41 41 H 1.08002 * 125.48967 * 179.84187 * 24 23 22 42 42 H 1.08008 * 119.95459 * 179.72638 * 27 21 20 43 43 H 1.07999 * 120.04071 * 180.24935 * 28 27 21 44 44 H 1.09005 * 110.36560 * 142.74021 * 29 15 14 45 45 H 1.08995 * 110.36888 * 265.06054 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0008 12 1 0.3260 -4.7002 -0.7925 13 6 1.7995 -6.1801 -0.1244 14 6 0.8244 -7.1642 0.5554 15 7 -0.0345 -6.3776 1.4529 16 6 -1.0328 -6.8679 2.2141 17 8 -1.7479 -6.1102 2.8405 18 6 -1.2580 -8.3257 2.2872 19 6 -2.1917 -8.8456 3.1869 20 6 -2.3987 -10.2058 3.2526 21 6 -1.6794 -11.0610 2.4255 22 7 -1.8920 -12.4423 2.4955 23 6 -1.2659 -13.4044 1.7604 24 6 -1.7804 -14.5895 2.1508 25 7 -2.6891 -14.3761 3.1034 26 7 -2.7884 -13.1143 3.3405 27 6 -0.7453 -10.5475 1.5330 28 6 -0.5368 -9.1880 1.4579 29 6 0.3731 -4.9629 1.3774 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6842 -3.7140 0.8920 33 1 2.6855 -3.7148 -0.8879 34 1 2.7520 -6.1536 0.4049 35 1 1.9487 -6.4461 -1.1709 36 1 1.3834 -7.9025 1.1303 37 1 0.2146 -7.6645 -0.1968 38 1 -2.7505 -8.1819 3.8300 39 1 -3.1206 -10.6084 3.9476 40 1 -0.5066 -13.2483 1.0084 41 1 -1.4982 -15.5553 1.7584 42 1 -0.1851 -11.2151 0.8950 43 1 0.1861 -8.7895 0.7615 44 1 -0.5002 -4.3130 1.4334 45 1 1.0745 -4.7269 2.1776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713361097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 113.324963 kcal Electronic energy + Delta-G solvation = -27959.675039 eV Core-core repulsion = 23979.969585 eV Total energy + Delta-G solvation = -3979.705454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23899 -41.72579 -39.92633 -38.80266 -36.53545 -35.60025 -34.07364 -32.67981 -32.06256 -31.66973 -31.00083 -29.93137 -27.37199 -26.12834 -24.88197 -24.60654 -23.62580 -22.59263 -22.16973 -21.42873 -21.03532 -19.51209 -19.19261 -18.47951 -17.53396 -17.00320 -16.91138 -16.56096 -16.22361 -16.20337 -15.94267 -15.36708 -15.27734 -15.17633 -15.09648 -14.70720 -14.61458 -14.32532 -14.24322 -13.90835 -13.73669 -13.41302 -13.09105 -12.98720 -12.83353 -12.74215 -12.34924 -12.25352 -12.21687 -12.11240 -11.99287 -11.76630 -11.57656 -11.41514 -11.14685 -10.92517 -10.45858 -10.27639 -9.83185 -9.56384 -8.98878 -7.94472 -5.23481 -0.84960 0.13161 0.51089 1.06366 1.47421 1.49439 1.54152 1.57755 1.70957 1.81458 2.56525 2.63034 3.23915 3.30117 3.39923 3.51896 3.60945 3.62829 3.75172 3.86402 3.90626 4.03776 4.13926 4.19059 4.24224 4.26621 4.36052 4.42008 4.48395 4.57489 4.67578 4.79860 4.82274 4.85685 4.86792 5.01304 5.06158 5.07615 5.11477 5.21104 5.25037 5.28910 5.38448 5.44821 5.51834 5.79202 6.27434 6.40880 6.97272 7.05404 7.33543 8.11088 8.31284 9.29187 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001789 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.517275 B =15643.739124 C =16303.106638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.162 3.838 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.114 4.114 14 C 0.078 3.922 15 N -0.608 5.608 16 C 0.560 3.440 17 O -0.590 6.590 18 C -0.138 4.138 19 C -0.050 4.050 20 C -0.125 4.125 21 C 0.152 3.848 22 N -0.326 5.326 23 C 0.044 3.956 24 C -0.081 4.081 25 N -0.265 5.265 26 N -0.115 5.115 27 C -0.113 4.113 28 C -0.085 4.085 29 C 0.117 3.883 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.252 0.748 41 H 0.225 0.775 42 H 0.190 0.810 43 H 0.204 0.796 44 H 0.040 0.960 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -32.909 -2.373 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.118 4.118 12 H 0.094 0.906 13 C -0.151 4.151 14 C -0.042 4.042 15 N -0.340 5.340 16 C 0.351 3.649 17 O -0.472 6.472 18 C -0.142 4.142 19 C -0.070 4.070 20 C -0.146 4.146 21 C 0.059 3.941 22 N -0.108 5.108 23 C -0.106 4.106 24 C -0.236 4.236 25 N -0.134 5.134 26 N -0.092 5.092 27 C -0.133 4.133 28 C -0.103 4.103 29 C -0.006 4.006 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.268 0.732 41 H 0.241 0.759 42 H 0.208 0.792 43 H 0.220 0.780 44 H 0.059 0.941 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.513 -32.375 -0.867 32.576 hybrid contribution -0.092 1.679 -0.097 1.684 sum 3.421 -30.696 -0.964 30.901 Atomic orbital electron populations 1.69831 1.06792 1.25986 1.59725 1.25606 0.96332 1.01320 1.03904 0.85130 0.77692 0.79415 0.77477 1.21206 1.22692 1.19197 1.19678 0.91656 0.85322 1.40814 0.90146 1.42657 1.05596 1.01506 1.89436 1.20799 0.93381 0.83692 0.98552 1.22380 0.97885 0.96348 0.95149 0.90556 1.22763 0.98191 0.90466 1.03723 1.23027 0.92807 0.95108 0.93243 1.48477 1.32886 1.09550 1.43098 1.18439 0.79140 0.88742 0.78597 1.90796 1.47880 1.61098 1.47434 1.19906 1.01325 0.91518 1.01419 1.21110 0.95157 0.94425 0.96314 1.20834 1.01129 0.92208 1.00393 1.18071 0.98665 0.78409 0.98915 1.48189 1.28631 1.06059 1.27946 1.24569 1.00176 0.87004 0.98800 1.24045 0.98661 1.01756 0.99171 1.74344 1.16467 1.08291 1.14266 1.82179 1.13037 0.98992 1.14971 1.21327 0.97363 0.96228 0.98419 1.22978 0.97951 0.92081 0.97299 1.22108 0.98317 0.81641 0.98523 0.94177 0.79764 0.95687 0.94404 0.88800 0.86523 0.86693 0.87235 0.85089 0.84394 0.73201 0.75857 0.79247 0.78029 0.94114 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -37.19 5.55 -343.45 -1.90 -39.09 16 10 C 0.16 5.76 5.72 86.38 0.49 6.25 16 11 C -0.10 -2.65 3.03 -9.48 -0.03 -2.68 16 12 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 13 C -0.11 -1.57 6.42 31.78 0.20 -1.37 16 14 C 0.08 0.91 4.87 86.73 0.42 1.33 16 15 N -0.61 -14.84 3.33 -830.75 -2.76 -17.60 16 16 C 0.56 16.11 7.80 86.74 0.68 16.78 16 17 O -0.59 -23.47 16.59 -3.93 -0.07 -23.53 16 18 C -0.14 -2.76 5.87 -20.08 -0.12 -2.88 16 19 C -0.05 -1.06 9.58 22.50 0.22 -0.85 16 20 C -0.13 -2.29 9.66 22.34 0.22 -2.07 16 21 C 0.15 2.10 6.70 38.23 0.26 2.35 16 22 N -0.33 -4.74 3.85 -187.13 -0.72 -5.46 16 23 C 0.04 0.27 10.92 83.25 0.91 1.17 16 24 C -0.08 -0.78 11.86 83.71 0.99 0.21 16 25 N -0.27 -5.30 12.33 -58.71 -0.72 -6.02 16 26 N -0.12 -2.52 13.15 37.02 0.49 -2.04 16 27 C -0.11 -0.75 9.46 22.34 0.21 -0.54 16 28 C -0.09 -0.84 8.60 22.50 0.19 -0.65 16 29 C 0.12 3.70 6.35 86.78 0.55 4.25 16 30 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.37 20.13 7.67 -92.71 -0.71 19.42 16 32 H 0.03 0.89 7.96 -2.39 -0.02 0.87 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.60 6.73 -2.39 -0.02 0.58 16 37 H 0.11 0.67 6.73 -2.39 -0.02 0.66 16 38 H 0.13 3.12 7.66 -2.91 -0.02 3.09 16 39 H 0.14 2.64 7.72 -2.91 -0.02 2.62 16 40 H 0.25 -1.58 7.16 -2.91 -0.02 -1.60 16 41 H 0.22 0.30 8.06 -2.91 -0.02 0.28 16 42 H 0.19 -0.67 6.82 -2.91 -0.02 -0.69 16 43 H 0.20 0.76 2.73 -8.65 -0.02 0.74 16 44 H 0.04 1.64 7.99 -2.38 -0.02 1.62 16 45 H 0.06 2.09 7.90 -2.39 -0.02 2.07 16 Total: -1.00 -88.35 374.81 3.44 -84.91 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.32 Total: 16.33 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.50 Total: 4.65 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.34 Total: -130.60 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.53 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -88.35 3.44 -84.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713361097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.235 kcal (2) G-P(sol) polarization free energy of solvation -88.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds