Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47133 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47379 * 119.99844 * 3 2 1 6 6 H 1.48502 * 109.47378 * 240.00154 * 3 2 1 7 7 C 1.38814 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00031 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88466 * 308.87953 * 11 10 9 13 13 C 1.55154 * 111.00598 * 185.00085 * 11 10 9 14 14 C 1.54326 * 102.93999 * 206.42292 * 13 11 10 15 15 N 1.47018 * 107.27287 * 22.19237 * 14 13 11 16 16 C 1.34776 * 125.65246 * 181.01440 * 15 14 13 17 17 O 1.21571 * 120.00302 * 174.34862 * 16 15 14 18 18 C 1.47695 * 119.99657 * 354.34959 * 16 15 14 19 19 C 1.39696 * 120.07534 * 7.02278 * 18 16 15 20 20 C 1.37748 * 119.91365 * 179.71931 * 19 18 16 21 21 C 1.39027 * 120.07697 * 0.55638 * 20 19 18 22 22 N 1.39945 * 119.91442 * 179.69962 * 21 20 19 23 23 C 1.36301 * 126.86644 * 0.02562 * 22 21 20 24 24 C 1.34972 * 106.77891 * 180.02562 * 23 22 21 25 25 N 1.33375 * 109.01182 * 359.97438 * 24 23 22 26 26 N 1.28767 * 109.92982 * 359.70939 * 25 24 23 27 27 C 1.39028 * 120.16386 * 359.71497 * 21 20 19 28 28 C 1.37743 * 120.07796 * 0.02562 * 27 21 20 29 29 C 1.47426 * 108.70464 * 1.05766 * 15 14 13 30 30 H 0.97004 * 119.99971 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99310 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47444 * 299.99733 * 10 9 7 33 33 H 1.09000 * 109.47716 * 59.99973 * 10 9 7 34 34 H 1.08998 * 110.71975 * 324.78396 * 13 11 10 35 35 H 1.08997 * 110.72203 * 87.88501 * 13 11 10 36 36 H 1.08996 * 109.88160 * 141.61110 * 14 13 11 37 37 H 1.08999 * 109.88288 * 262.77233 * 14 13 11 38 38 H 1.07997 * 120.04589 * 359.97438 * 19 18 16 39 39 H 1.07996 * 119.95721 * 180.25111 * 20 19 18 40 40 H 1.07994 * 126.61637 * 0.03393 * 23 22 21 41 41 H 1.07997 * 125.49168 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.95611 * 179.97438 * 27 21 20 43 43 H 1.08003 * 120.03911 * 179.97438 * 28 27 21 44 44 H 1.08998 * 110.36965 * 217.03393 * 29 15 14 45 45 H 1.09001 * 110.36635 * 94.70849 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 1 0.3252 -4.6992 0.7945 13 6 1.7992 -6.1800 0.1295 14 6 0.8249 -7.1646 -0.5509 15 7 -0.0325 -6.3789 -1.4503 16 6 -1.0287 -6.8700 -2.2138 17 8 -1.7416 -6.1130 -2.8436 18 6 -1.2543 -8.3279 -2.2851 19 6 -0.5355 -9.1891 -1.4526 20 6 -0.7527 -10.5477 -1.5179 21 6 -1.6776 -11.0630 -2.4189 22 7 -1.8911 -12.4444 -2.4868 23 6 -1.2749 -13.4046 -1.7411 24 6 -1.7828 -14.5909 -2.1368 25 7 -2.6852 -14.3790 -3.0958 26 7 -2.7870 -13.1172 -3.3316 27 6 -2.3907 -10.2093 -3.2529 28 6 -2.1826 -8.8491 -3.1895 29 6 0.3785 -4.9649 -1.3796 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6854 -3.7149 -0.8878 33 1 2.6841 -3.7142 0.8921 34 1 2.7525 -6.1540 -0.3984 35 1 1.9471 -6.4418 1.1772 36 1 1.3848 -7.9035 -1.1242 37 1 0.2143 -7.6622 0.2025 38 1 0.1867 -8.7899 -0.7558 39 1 -0.2003 -11.2139 -0.8717 40 1 -0.5249 -13.2468 -0.9802 41 1 -1.5035 -15.5560 -1.7407 42 1 -3.1081 -10.6132 -3.9519 43 1 -2.7366 -8.1866 -3.8379 44 1 -0.4928 -4.3129 -1.4412 45 1 1.0832 -4.7342 -2.1786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713361098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 139.285412 kcal Electronic energy + Delta-G solvation = -28003.963868 eV Core-core repulsion = 24025.384143 eV Total energy + Delta-G solvation = -3978.579725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.72268 -40.88885 -39.19208 -37.76198 -35.22080 -34.84728 -32.82000 -31.89108 -31.16319 -30.58920 -30.31944 -28.70798 -26.07151 -24.81657 -24.12357 -23.57805 -22.48472 -22.00683 -21.55802 -20.42561 -20.12909 -18.98183 -17.83804 -17.18991 -16.60874 -16.38247 -16.09827 -15.72004 -15.59827 -15.05770 -14.74916 -14.58537 -14.56689 -14.20336 -13.98727 -13.72370 -13.56159 -13.51983 -13.22558 -12.96363 -12.73207 -12.43095 -12.29509 -12.04456 -11.73528 -11.58771 -11.47682 -11.02604 -10.85662 -10.70563 -10.63353 -10.49421 -10.12267 -9.98885 -9.97893 -9.70496 -9.19453 -9.04263 -8.91994 -8.77157 -7.04749 -6.12322 -3.13191 -0.24425 0.69207 1.09757 1.54933 2.00990 2.51718 2.73031 3.33541 3.50498 3.54174 3.71913 3.77850 3.88414 4.07020 4.16941 4.28431 4.37767 4.45663 4.56222 4.62448 4.66587 4.71506 4.74089 4.90033 4.97538 5.03560 5.13773 5.31438 5.38355 5.41760 5.52125 5.58856 5.67353 5.69498 5.75429 5.78143 5.79907 5.85449 5.91996 6.05013 6.15785 6.21669 6.31203 6.53779 6.65218 7.30820 7.57652 7.77236 7.94436 8.73455 9.19397 10.05853 10.19718 11.35935 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.001793 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.348825 B =15609.771490 C =16264.957021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.336 4.336 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.085 0.915 13 C -0.128 4.128 14 C 0.088 3.912 15 N -0.611 5.611 16 C 0.568 3.432 17 O -0.528 6.528 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.134 4.134 21 C 0.156 3.844 22 N -0.319 5.319 23 C 0.023 3.977 24 C -0.072 4.072 25 N -0.231 5.231 26 N -0.060 5.060 27 C -0.116 4.116 28 C -0.037 4.037 29 C 0.115 3.885 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -29.620 -0.283 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.034 4.034 15 N -0.344 5.344 16 C 0.357 3.643 17 O -0.405 6.405 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.063 3.937 22 N -0.101 5.101 23 C -0.126 4.126 24 C -0.227 4.227 25 N -0.101 5.101 26 N -0.038 5.038 27 C -0.136 4.136 28 C -0.057 4.057 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.214 0.786 41 H 0.209 0.791 42 H 0.165 0.835 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.161 -27.479 -1.797 27.538 hybrid contribution 0.783 -1.918 0.898 2.258 sum 0.944 -29.396 -0.899 29.425 Atomic orbital electron populations 1.70886 1.06049 1.28465 1.53252 1.25797 0.97047 1.01060 1.00277 0.83237 0.74216 0.75592 0.75833 1.21006 1.22258 1.22247 1.20004 0.92007 0.85773 1.48873 0.91730 1.42372 1.04897 1.00909 1.90817 1.20517 0.92571 0.84264 0.98381 1.22625 0.98560 0.94950 0.96540 0.89623 1.22726 0.98309 0.94159 1.01416 1.22557 0.92900 0.95112 0.92877 1.48419 1.32947 1.10277 1.42782 1.17795 0.79705 0.87415 0.79370 1.90836 1.45622 1.59401 1.44691 1.20109 0.99590 0.93407 0.99440 1.22725 0.98703 0.92147 0.98434 1.20855 0.98971 0.96257 0.99450 1.17838 0.98584 0.78454 0.98779 1.48068 1.28783 1.05751 1.27480 1.23616 1.01095 0.88501 0.99438 1.23311 0.99935 0.99600 0.99809 1.74373 1.14830 1.08199 1.12651 1.82175 1.10384 0.98418 1.12823 1.20918 1.00495 0.92514 0.99639 1.21249 0.94531 0.94113 0.95791 1.22411 1.00180 0.80351 0.97727 0.93367 0.79946 0.95887 0.95662 0.89957 0.89586 0.90361 0.90361 0.80835 0.84366 0.78566 0.79114 0.83518 0.83189 0.89725 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.17 13.70 55.49 0.76 -28.41 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.78 29.92 -169.99 -5.09 20.69 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.34 -9.36 9.99 -15.06 -0.15 -9.51 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.19 5.55 -59.91 -0.33 -18.52 16 10 C 0.17 3.16 5.72 -4.04 -0.02 3.13 16 11 C -0.11 -1.51 3.05 -88.47 -0.27 -1.78 16 12 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16 14 C 0.09 0.72 4.86 -3.06 -0.01 0.70 16 15 N -0.61 -7.65 3.33 -176.45 -0.59 -8.23 16 16 C 0.57 7.88 7.80 -12.40 -0.10 7.78 16 17 O -0.53 -9.50 16.59 5.30 0.09 -9.41 16 18 C -0.12 -1.26 5.87 -104.95 -0.62 -1.88 16 19 C -0.10 -0.73 8.60 -39.22 -0.34 -1.07 16 20 C -0.13 -0.81 9.46 -39.47 -0.37 -1.19 16 21 C 0.16 1.28 6.70 -83.57 -0.56 0.71 16 22 N -0.32 -2.72 3.85 -10.50 -0.04 -2.76 16 23 C 0.02 0.13 10.92 -16.73 -0.18 -0.06 16 24 C -0.07 -0.46 11.86 -18.04 -0.21 -0.67 16 25 N -0.23 -2.39 12.33 30.09 0.37 -2.01 16 26 N -0.06 -0.66 13.15 60.35 0.79 0.13 16 27 C -0.12 -1.03 9.66 -39.47 -0.38 -1.41 16 28 C -0.04 -0.37 9.58 -39.22 -0.38 -0.74 16 29 C 0.11 1.74 6.35 -2.53 -0.02 1.72 16 30 H 0.26 7.80 6.77 -40.82 -0.28 7.52 16 31 H 0.37 9.27 6.50 -40.82 -0.27 9.01 16 32 H 0.02 0.44 7.96 -51.93 -0.41 0.02 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.47 6.73 -51.93 -0.35 0.12 16 37 H 0.08 0.49 6.74 -51.93 -0.35 0.14 16 38 H 0.18 0.91 2.73 -58.65 -0.16 0.75 16 39 H 0.14 0.37 6.82 -52.49 -0.36 0.01 16 40 H 0.20 0.17 7.16 -52.49 -0.38 -0.20 16 41 H 0.19 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.15 1.24 7.72 -52.49 -0.41 0.83 16 43 H 0.15 1.49 7.66 -52.48 -0.40 1.09 16 44 H 0.08 1.52 7.99 -51.93 -0.41 1.10 16 45 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -37.21 373.13 -7.77 -44.99 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.50 Total: 4.89 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.87 Total: -6.97 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.97 Total: -59.81 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.09 Total: 20.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.21 -7.77 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713361098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.274 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds