Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47133 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47379 * 119.99844 * 3 2 1 6 6 H 1.48502 * 109.47378 * 240.00154 * 3 2 1 7 7 C 1.38814 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00031 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88466 * 308.87953 * 11 10 9 13 13 C 1.55154 * 111.00598 * 185.00085 * 11 10 9 14 14 C 1.54326 * 102.93999 * 206.42292 * 13 11 10 15 15 N 1.47018 * 107.27287 * 22.19237 * 14 13 11 16 16 C 1.34776 * 125.65246 * 181.01440 * 15 14 13 17 17 O 1.21571 * 120.00302 * 174.34862 * 16 15 14 18 18 C 1.47695 * 119.99657 * 354.34959 * 16 15 14 19 19 C 1.39696 * 120.07534 * 7.02278 * 18 16 15 20 20 C 1.37748 * 119.91365 * 179.71931 * 19 18 16 21 21 C 1.39027 * 120.07697 * 0.55638 * 20 19 18 22 22 N 1.39945 * 119.91442 * 179.69962 * 21 20 19 23 23 C 1.36301 * 126.86644 * 0.02562 * 22 21 20 24 24 C 1.34972 * 106.77891 * 180.02562 * 23 22 21 25 25 N 1.33375 * 109.01182 * 359.97438 * 24 23 22 26 26 N 1.28767 * 109.92982 * 359.70939 * 25 24 23 27 27 C 1.39028 * 120.16386 * 359.71497 * 21 20 19 28 28 C 1.37743 * 120.07796 * 0.02562 * 27 21 20 29 29 C 1.47426 * 108.70464 * 1.05766 * 15 14 13 30 30 H 0.97004 * 119.99971 * 179.97438 * 1 2 3 31 31 H 0.97003 * 119.99310 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47444 * 299.99733 * 10 9 7 33 33 H 1.09000 * 109.47716 * 59.99973 * 10 9 7 34 34 H 1.08998 * 110.71975 * 324.78396 * 13 11 10 35 35 H 1.08997 * 110.72203 * 87.88501 * 13 11 10 36 36 H 1.08996 * 109.88160 * 141.61110 * 14 13 11 37 37 H 1.08999 * 109.88288 * 262.77233 * 14 13 11 38 38 H 1.07997 * 120.04589 * 359.97438 * 19 18 16 39 39 H 1.07996 * 119.95721 * 180.25111 * 20 19 18 40 40 H 1.07994 * 126.61637 * 0.03393 * 23 22 21 41 41 H 1.07997 * 125.49168 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.95611 * 179.97438 * 27 21 20 43 43 H 1.08003 * 120.03911 * 179.97438 * 28 27 21 44 44 H 1.08998 * 110.36965 * 217.03393 * 29 15 14 45 45 H 1.09001 * 110.36635 * 94.70849 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 1 0.3252 -4.6992 0.7945 13 6 1.7992 -6.1800 0.1295 14 6 0.8249 -7.1646 -0.5509 15 7 -0.0325 -6.3789 -1.4503 16 6 -1.0287 -6.8700 -2.2138 17 8 -1.7416 -6.1130 -2.8436 18 6 -1.2543 -8.3279 -2.2851 19 6 -0.5355 -9.1891 -1.4526 20 6 -0.7527 -10.5477 -1.5179 21 6 -1.6776 -11.0630 -2.4189 22 7 -1.8911 -12.4444 -2.4868 23 6 -1.2749 -13.4046 -1.7411 24 6 -1.7828 -14.5909 -2.1368 25 7 -2.6852 -14.3790 -3.0958 26 7 -2.7870 -13.1172 -3.3316 27 6 -2.3907 -10.2093 -3.2529 28 6 -2.1826 -8.8491 -3.1895 29 6 0.3785 -4.9649 -1.3796 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6854 -3.7149 -0.8878 33 1 2.6841 -3.7142 0.8921 34 1 2.7525 -6.1540 -0.3984 35 1 1.9471 -6.4418 1.1772 36 1 1.3848 -7.9035 -1.1242 37 1 0.2143 -7.6622 0.2025 38 1 0.1867 -8.7899 -0.7558 39 1 -0.2003 -11.2139 -0.8717 40 1 -0.5249 -13.2468 -0.9802 41 1 -1.5035 -15.5560 -1.7407 42 1 -3.1081 -10.6132 -3.9519 43 1 -2.7366 -8.1866 -3.8379 44 1 -0.4928 -4.3129 -1.4412 45 1 1.0832 -4.7342 -2.1786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713361098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 112.718699 kcal Electronic energy + Delta-G solvation = -28005.115887 eV Core-core repulsion = 24025.384143 eV Total energy + Delta-G solvation = -3979.731744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.25787 -41.77945 -39.97465 -38.87905 -36.83705 -35.64613 -34.21018 -32.68143 -32.00723 -31.68439 -31.04257 -29.88601 -27.25792 -26.05187 -24.98278 -24.65453 -23.79306 -22.62548 -22.20812 -21.50503 -21.09642 -19.54490 -19.38702 -18.56760 -17.69412 -17.08778 -16.93497 -16.43007 -16.27691 -16.23779 -15.98928 -15.74784 -15.36449 -15.20403 -15.12066 -14.85009 -14.64305 -14.39953 -14.29275 -13.98561 -13.82568 -13.44480 -13.05154 -12.95807 -12.76814 -12.56840 -12.42746 -12.27184 -12.23616 -11.98644 -11.88489 -11.68427 -11.67510 -11.20564 -11.18936 -10.92798 -10.47730 -10.30713 -9.88815 -9.60135 -9.11885 -8.40600 -5.34734 -0.87822 0.10257 0.48502 1.04244 1.52273 1.58135 1.66574 1.68555 1.75125 1.84650 2.59535 2.71629 3.19073 3.25267 3.39665 3.47547 3.53367 3.57042 3.70953 3.78615 3.83764 4.00276 4.02361 4.12485 4.18635 4.20775 4.30484 4.35758 4.42191 4.49482 4.58590 4.70721 4.75356 4.79067 4.81261 4.94092 4.97729 5.02993 5.05677 5.15382 5.20271 5.21498 5.34614 5.36685 5.58477 5.76791 6.34492 6.47328 6.91483 7.03689 7.08338 7.98688 8.09665 9.11097 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.001793 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.348825 B =15609.771490 C =16264.957021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.761 5.761 10 C 0.168 3.832 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.114 4.114 14 C 0.079 3.921 15 N -0.609 5.609 16 C 0.560 3.440 17 O -0.590 6.590 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.113 4.113 21 C 0.153 3.847 22 N -0.327 5.327 23 C 0.044 3.956 24 C -0.080 4.080 25 N -0.265 5.265 26 N -0.115 5.115 27 C -0.125 4.125 28 C -0.050 4.050 29 C 0.117 3.883 30 H 0.242 0.758 31 H 0.358 0.642 32 H 0.024 0.976 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.203 0.797 39 H 0.191 0.809 40 H 0.252 0.748 41 H 0.225 0.775 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.040 0.960 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -33.014 2.442 33.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.953 3.047 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.041 3.959 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.041 4.041 15 N -0.340 5.340 16 C 0.352 3.648 17 O -0.472 6.472 18 C -0.142 4.142 19 C -0.103 4.103 20 C -0.133 4.133 21 C 0.060 3.940 22 N -0.109 5.109 23 C -0.105 4.105 24 C -0.236 4.236 25 N -0.133 5.133 26 N -0.092 5.092 27 C -0.145 4.145 28 C -0.070 4.070 29 C -0.006 4.006 30 H 0.052 0.948 31 H 0.189 0.811 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.219 0.781 39 H 0.208 0.792 40 H 0.268 0.732 41 H 0.242 0.758 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.058 0.942 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.814 -30.954 0.935 31.202 hybrid contribution -0.267 -1.014 0.080 1.052 sum 3.546 -31.968 1.015 32.181 Atomic orbital electron populations 1.71003 1.07348 1.27753 1.56406 1.27271 0.97071 1.04948 1.00627 0.82620 0.73346 0.71421 0.77274 1.22232 1.19893 1.20420 1.20424 0.92536 0.87103 1.46496 0.91078 1.42666 1.04770 1.02328 1.90754 1.20726 0.93328 0.83385 0.98427 1.22438 0.97893 0.96388 0.95145 0.90495 1.22767 0.98226 0.90372 1.03786 1.23023 0.92811 0.95068 0.93206 1.48462 1.33071 1.09468 1.43041 1.18454 0.79086 0.88786 0.78513 1.90797 1.47949 1.61151 1.47274 1.19891 1.01449 0.91428 1.01477 1.22970 0.97888 0.92120 0.97323 1.21328 0.97448 0.96206 0.98356 1.18075 0.98667 0.78432 0.98794 1.48194 1.28856 1.06088 1.27732 1.24567 1.00299 0.87054 0.98623 1.24048 0.98973 1.01735 0.98846 1.74343 1.16405 1.08302 1.14283 1.82181 1.12813 0.98961 1.15195 1.20838 1.01106 0.92203 1.00396 1.21109 0.95132 0.94432 0.96286 1.22138 0.98194 0.81860 0.98385 0.94810 0.81064 0.95845 0.94607 0.88860 0.86478 0.86599 0.87106 0.78076 0.79231 0.73206 0.75842 0.84348 0.85074 0.94164 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.63 13.70 21.65 0.30 -62.33 16 2 C -0.11 -6.37 5.50 84.86 0.47 -5.90 16 3 Si 1.13 52.15 29.92 68.60 2.05 54.20 16 4 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.33 -18.78 9.99 84.03 0.84 -17.94 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.76 -38.03 5.55 -343.46 -1.90 -39.93 16 10 C 0.17 6.09 5.72 86.38 0.49 6.59 16 11 C -0.10 -2.69 3.05 -9.40 -0.03 -2.72 16 12 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.11 -1.59 6.42 31.78 0.20 -1.39 16 14 C 0.08 0.91 4.86 86.73 0.42 1.33 16 15 N -0.61 -14.75 3.33 -830.44 -2.76 -17.51 16 16 C 0.56 16.00 7.80 86.74 0.68 16.68 16 17 O -0.59 -23.29 16.59 -3.94 -0.07 -23.35 16 18 C -0.14 -2.75 5.87 -20.08 -0.12 -2.87 16 19 C -0.09 -0.83 8.60 22.51 0.19 -0.64 16 20 C -0.11 -0.73 9.46 22.34 0.21 -0.52 16 21 C 0.15 2.09 6.70 38.22 0.26 2.34 16 22 N -0.33 -4.70 3.85 -187.13 -0.72 -5.42 16 23 C 0.04 0.26 10.92 83.25 0.91 1.17 16 24 C -0.08 -0.77 11.86 83.71 0.99 0.22 16 25 N -0.26 -5.26 12.33 -58.71 -0.72 -5.99 16 26 N -0.11 -2.50 13.15 37.02 0.49 -2.02 16 27 C -0.13 -2.26 9.66 22.34 0.22 -2.05 16 28 C -0.05 -1.04 9.58 22.50 0.22 -0.83 16 29 C 0.12 3.69 6.35 86.86 0.55 4.24 16 30 H 0.24 15.55 6.77 -92.71 -0.63 14.92 16 31 H 0.36 19.01 6.50 -92.71 -0.60 18.41 16 32 H 0.02 0.86 7.96 -2.39 -0.02 0.84 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.60 6.73 -2.39 -0.02 0.58 16 37 H 0.11 0.67 6.74 -2.39 -0.02 0.65 16 38 H 0.20 0.73 2.73 -8.70 -0.02 0.71 16 39 H 0.19 -0.70 6.82 -2.91 -0.02 -0.72 16 40 H 0.25 -1.60 7.16 -2.91 -0.02 -1.62 16 41 H 0.23 0.28 8.06 -2.91 -0.02 0.26 16 42 H 0.14 2.63 7.72 -2.91 -0.02 2.60 16 43 H 0.13 3.09 7.66 -2.91 -0.02 3.07 16 44 H 0.04 1.60 7.99 -2.39 -0.02 1.58 16 45 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 Total: -1.00 -91.02 373.13 3.73 -87.29 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.57 Total: 17.33 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.50 Total: -2.27 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -5.33 Total: -133.19 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.07 Total: -23.35 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -91.02 3.73 -87.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713361098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.007 kcal (2) G-P(sol) polarization free energy of solvation -91.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds