Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47312 * 299.99774 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99738 * 3 2 1 7 7 C 1.38819 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99599 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99404 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46739 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47122 * 65.00610 * 11 10 9 13 13 N 1.46503 * 109.47461 * 304.99936 * 11 10 9 14 14 C 1.34771 * 119.99827 * 154.99708 * 13 11 10 15 15 O 1.21582 * 120.00626 * 0.02562 * 14 13 11 16 16 C 1.47603 * 119.99757 * 180.02562 * 14 13 11 17 17 C 1.39972 * 120.59358 * 318.76745 * 16 14 13 18 18 C 1.38349 * 118.34870 * 180.02562 * 17 16 14 19 19 C 1.38389 * 119.45112 * 0.27896 * 18 17 16 20 20 N 1.31842 * 121.18097 * 359.42158 * 19 18 17 21 21 C 1.32254 * 121.80538 * 0.59029 * 20 19 18 22 22 N 1.39351 * 119.79978 * 179.72436 * 21 20 19 23 23 C 1.35942 * 126.11016 * 332.42299 * 22 21 20 24 24 C 1.35229 * 107.60327 * 179.89658 * 23 22 21 25 25 C 1.40015 * 107.97368 * 0.37092 * 24 23 22 26 26 N 1.30781 * 108.37826 * 359.76879 * 25 24 23 27 27 C 1.53004 * 109.47350 * 185.00099 * 11 10 9 28 28 C 1.52994 * 117.50250 * 248.75019 * 27 11 10 29 29 C 1.52994 * 117.50199 * 180.08867 * 27 11 10 30 30 H 0.97005 * 119.99928 * 0.02562 * 1 2 3 31 31 H 0.96992 * 119.99710 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47097 * 60.00527 * 10 9 7 33 33 H 1.09001 * 109.47715 * 300.00159 * 10 9 7 34 34 H 0.97004 * 119.99711 * 335.00593 * 13 11 10 35 35 H 1.07999 * 120.82604 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.27640 * 180.02562 * 18 17 16 37 37 H 1.08004 * 119.40884 * 179.72493 * 19 18 17 38 38 H 1.08001 * 126.19175 * 0.04032 * 23 22 21 39 39 H 1.08001 * 126.01619 * 180.13923 * 24 23 22 40 40 H 1.08004 * 125.80872 * 179.75151 * 25 24 23 41 41 H 1.09005 * 115.54647 * 34.41793 * 27 11 10 42 42 H 1.09003 * 117.49813 * 0.02562 * 28 27 11 43 43 H 1.08997 * 117.50260 * 145.01484 * 28 27 11 44 44 H 1.09004 * 117.49946 * 214.97837 * 29 27 11 45 45 H 1.08999 * 117.50030 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.4980 -4.8143 -0.9285 13 7 0.1438 -4.6753 1.1341 14 6 -1.0806 -5.2362 1.0826 15 8 -1.4216 -5.8623 0.0977 16 6 -2.0077 -5.0902 2.2218 17 6 -1.5421 -5.1977 3.5374 18 6 -2.4515 -5.0536 4.5700 19 6 -3.7827 -4.8156 4.2760 20 7 -4.1985 -4.7124 3.0291 21 6 -3.3711 -4.8419 2.0055 22 7 -3.8568 -4.7306 0.7041 23 6 -5.1219 -5.0126 0.2942 24 6 -5.1841 -4.7728 -1.0352 25 6 -3.9208 -4.3396 -1.4556 26 7 -3.1268 -4.3141 -0.4168 27 6 1.8245 -6.1411 0.1301 28 6 1.8346 -7.0701 -1.0855 29 6 1.0019 -7.4310 0.1471 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6846 -3.7137 0.8928 33 1 2.6848 -3.7154 -0.8872 34 1 0.4159 -4.1760 1.9200 35 1 -0.4988 -5.3885 3.7414 36 1 -2.1261 -5.1303 5.5969 37 1 -4.4929 -4.7076 5.0825 38 1 -5.9313 -5.3623 0.9179 39 1 -6.0541 -4.8974 -1.6629 40 1 -3.6484 -4.0723 -2.4660 41 1 2.7230 -6.1090 0.7464 42 1 1.2996 -6.7397 -1.9759 43 1 2.7395 -7.6494 -1.2688 44 1 1.3595 -8.2477 0.7744 45 1 -0.0812 -7.3383 0.0684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716617235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 147.972471 kcal Electronic energy + Delta-G solvation = -30142.057182 eV Core-core repulsion = 26163.854157 eV Total energy + Delta-G solvation = -3978.203025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49864 -40.14631 -39.23166 -37.00460 -34.96235 -33.80870 -33.30437 -32.63549 -30.98052 -30.16786 -29.47604 -27.92441 -24.84724 -24.12173 -23.86121 -22.14074 -21.53097 -21.24970 -20.91762 -20.45639 -19.93641 -18.38296 -17.61930 -16.92714 -16.85164 -15.89139 -15.55696 -15.33415 -14.99986 -14.89925 -14.54399 -14.33242 -14.01970 -13.74026 -13.51478 -13.27738 -13.16839 -13.09833 -12.84624 -12.60474 -12.55027 -12.07241 -11.63575 -11.22873 -11.00537 -10.87621 -10.81213 -10.50856 -10.39455 -10.14919 -10.11864 -10.08429 -9.93329 -9.85573 -9.66637 -9.41070 -9.03880 -8.89054 -8.47703 -8.25993 -6.92262 -5.73886 -3.04294 0.46450 0.83619 2.16590 2.29794 2.98711 3.07998 3.33064 3.43244 3.48729 3.51225 3.68752 4.12355 4.24020 4.44753 4.57764 4.64240 4.73346 4.87524 4.92638 5.08832 5.14120 5.19941 5.26450 5.33261 5.51560 5.54129 5.58393 5.72559 5.79176 5.82080 5.85946 5.87008 5.96059 6.07904 6.11739 6.19082 6.27057 6.39720 6.52364 6.54783 6.71575 6.74267 7.00147 7.17746 7.42618 7.70919 7.89722 7.94585 8.42752 8.61304 9.54890 10.11837 10.47413 11.47629 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008239 B = 0.004330 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.534492 B = 6464.526501 C = 7439.655002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.149 3.851 11 C 0.173 3.827 12 H 0.090 0.910 13 N -0.699 5.699 14 C 0.575 3.425 15 O -0.513 6.513 16 C -0.169 4.169 17 C -0.026 4.026 18 C -0.190 4.190 19 C 0.145 3.855 20 N -0.507 5.507 21 C 0.419 3.581 22 N -0.328 5.328 23 C 0.065 3.935 24 C -0.258 4.258 25 C 0.055 3.945 26 N -0.224 5.224 27 C -0.162 4.162 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.254 0.746 31 H 0.388 0.612 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.401 0.599 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.152 0.848 40 H 0.188 0.812 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -15.554 7.291 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.021 3.979 11 C 0.068 3.932 12 H 0.108 0.892 13 N -0.349 5.349 14 C 0.360 3.640 15 O -0.389 6.389 16 C -0.177 4.177 17 C -0.052 4.052 18 C -0.210 4.210 19 C -0.013 4.013 20 N -0.219 5.219 21 C 0.190 3.810 22 N -0.107 5.107 23 C -0.075 4.075 24 C -0.287 4.287 25 C -0.136 4.136 26 N -0.041 5.041 27 C -0.182 4.182 28 C -0.208 4.208 29 C -0.222 4.222 30 H 0.064 0.936 31 H 0.223 0.777 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.235 0.765 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.192 0.808 39 H 0.170 0.830 40 H 0.205 0.795 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.706 -15.464 6.877 18.204 hybrid contribution 0.302 0.993 0.330 1.089 sum -6.404 -14.471 7.207 17.388 Atomic orbital electron populations 1.69705 1.05021 1.25410 1.57303 1.24756 0.95466 0.97621 1.02933 0.86154 0.78777 0.84298 0.77155 1.20570 1.21882 1.21970 1.19240 0.90982 0.84072 1.43062 0.91162 1.42372 1.06137 0.99611 1.89470 1.20903 0.92981 0.85248 0.98809 1.20781 0.89911 0.92528 0.89940 0.89221 1.45781 1.14106 1.54193 1.20815 1.17463 0.81166 0.79629 0.85758 1.90702 1.75405 1.40888 1.31862 1.20634 0.93937 1.07391 0.95732 1.21730 1.00841 0.92346 0.90307 1.22076 0.94287 1.03885 1.00797 1.22691 0.94731 0.92142 0.91758 1.67010 1.38534 1.16955 0.99437 1.17472 0.87813 0.92909 0.82777 1.45607 1.08640 1.51813 1.04630 1.22720 0.87883 1.00811 0.96108 1.21580 0.99647 1.12903 0.94527 1.24142 0.91782 0.98817 0.98865 1.77914 1.17310 1.17728 0.91123 1.22669 1.01380 0.91519 1.02652 1.22878 1.01930 1.03120 0.92828 1.23249 1.00662 0.97437 1.00883 0.93635 0.77745 0.95950 0.94783 0.76461 0.83392 0.83511 0.81384 0.80818 0.83034 0.79480 0.87968 0.88744 0.89292 0.90048 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.75 9.99 -15.05 -0.15 -6.91 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.43 5.43 -59.91 -0.33 -18.75 16 10 C 0.15 2.95 5.80 -4.04 -0.02 2.93 16 11 C 0.17 2.99 2.43 -67.93 -0.17 2.83 16 12 H 0.09 1.80 7.33 -51.93 -0.38 1.42 16 13 N -0.70 -11.68 4.44 -54.83 -0.24 -11.92 16 14 C 0.58 10.02 5.72 -12.44 -0.07 9.94 16 15 O -0.51 -10.01 11.27 5.29 0.06 -9.95 16 16 C -0.17 -2.63 5.77 -104.66 -0.60 -3.24 16 17 C -0.03 -0.29 9.51 -38.89 -0.37 -0.66 16 18 C -0.19 -1.73 10.09 -39.49 -0.40 -2.13 16 19 C 0.15 1.47 11.17 -17.49 -0.20 1.27 16 20 N -0.51 -7.09 10.02 -12.03 -0.12 -7.21 16 21 C 0.42 6.90 7.38 -154.37 -1.14 5.76 16 22 N -0.33 -5.75 3.44 -11.89 -0.04 -5.79 16 23 C 0.06 0.93 11.22 -16.80 -0.19 0.74 16 24 C -0.26 -3.50 10.80 -39.99 -0.43 -3.93 16 25 C 0.05 0.88 12.02 -17.33 -0.21 0.67 16 26 N -0.22 -4.37 8.79 30.65 0.27 -4.10 16 27 C -0.16 -2.33 5.36 -90.62 -0.49 -2.82 16 28 C -0.17 -2.29 10.18 -26.70 -0.27 -2.56 16 29 C -0.19 -2.60 9.73 -26.70 -0.26 -2.86 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 10.64 7.33 -40.82 -0.30 10.34 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 6.43 8.18 -40.82 -0.33 6.09 16 35 H 0.15 1.32 7.99 -52.49 -0.42 0.91 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.19 2.52 8.06 -52.48 -0.42 2.09 16 41 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 42 H 0.09 1.35 8.05 -51.93 -0.42 0.94 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.12 1.92 5.02 -51.93 -0.26 1.66 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -35.64 381.02 -9.90 -45.54 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -5.88 Total: 18.05 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -5.06 Total: -1.37 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: 0.26 Total: -75.50 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.95 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.64 -9.90 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716617235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.511 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds