Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47312 * 299.99774 * 3 2 1 6 6 H 1.48500 * 109.47003 * 59.99738 * 3 2 1 7 7 C 1.38819 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99599 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99404 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46739 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47122 * 65.00610 * 11 10 9 13 13 N 1.46503 * 109.47461 * 304.99936 * 11 10 9 14 14 C 1.34771 * 119.99827 * 154.99708 * 13 11 10 15 15 O 1.21582 * 120.00626 * 0.02562 * 14 13 11 16 16 C 1.47603 * 119.99757 * 180.02562 * 14 13 11 17 17 C 1.39972 * 120.59358 * 318.76745 * 16 14 13 18 18 C 1.38349 * 118.34870 * 180.02562 * 17 16 14 19 19 C 1.38389 * 119.45112 * 0.27896 * 18 17 16 20 20 N 1.31842 * 121.18097 * 359.42158 * 19 18 17 21 21 C 1.32254 * 121.80538 * 0.59029 * 20 19 18 22 22 N 1.39351 * 119.79978 * 179.72436 * 21 20 19 23 23 C 1.35942 * 126.11016 * 332.42299 * 22 21 20 24 24 C 1.35229 * 107.60327 * 179.89658 * 23 22 21 25 25 C 1.40015 * 107.97368 * 0.37092 * 24 23 22 26 26 N 1.30781 * 108.37826 * 359.76879 * 25 24 23 27 27 C 1.53004 * 109.47350 * 185.00099 * 11 10 9 28 28 C 1.52994 * 117.50250 * 248.75019 * 27 11 10 29 29 C 1.52994 * 117.50199 * 180.08867 * 27 11 10 30 30 H 0.97005 * 119.99928 * 0.02562 * 1 2 3 31 31 H 0.96992 * 119.99710 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47097 * 60.00527 * 10 9 7 33 33 H 1.09001 * 109.47715 * 300.00159 * 10 9 7 34 34 H 0.97004 * 119.99711 * 335.00593 * 13 11 10 35 35 H 1.07999 * 120.82604 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.27640 * 180.02562 * 18 17 16 37 37 H 1.08004 * 119.40884 * 179.72493 * 19 18 17 38 38 H 1.08001 * 126.19175 * 0.04032 * 23 22 21 39 39 H 1.08001 * 126.01619 * 180.13923 * 24 23 22 40 40 H 1.08004 * 125.80872 * 179.75151 * 25 24 23 41 41 H 1.09005 * 115.54647 * 34.41793 * 27 11 10 42 42 H 1.09003 * 117.49813 * 0.02562 * 28 27 11 43 43 H 1.08997 * 117.50260 * 145.01484 * 28 27 11 44 44 H 1.09004 * 117.49946 * 214.97837 * 29 27 11 45 45 H 1.08999 * 117.50030 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.4980 -4.8143 -0.9285 13 7 0.1438 -4.6753 1.1341 14 6 -1.0806 -5.2362 1.0826 15 8 -1.4216 -5.8623 0.0977 16 6 -2.0077 -5.0902 2.2218 17 6 -1.5421 -5.1977 3.5374 18 6 -2.4515 -5.0536 4.5700 19 6 -3.7827 -4.8156 4.2760 20 7 -4.1985 -4.7124 3.0291 21 6 -3.3711 -4.8419 2.0055 22 7 -3.8568 -4.7306 0.7041 23 6 -5.1219 -5.0126 0.2942 24 6 -5.1841 -4.7728 -1.0352 25 6 -3.9208 -4.3396 -1.4556 26 7 -3.1268 -4.3141 -0.4168 27 6 1.8245 -6.1411 0.1301 28 6 1.8346 -7.0701 -1.0855 29 6 1.0019 -7.4310 0.1471 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6846 -3.7137 0.8928 33 1 2.6848 -3.7154 -0.8872 34 1 0.4159 -4.1760 1.9200 35 1 -0.4988 -5.3885 3.7414 36 1 -2.1261 -5.1303 5.5969 37 1 -4.4929 -4.7076 5.0825 38 1 -5.9313 -5.3623 0.9179 39 1 -6.0541 -4.8974 -1.6629 40 1 -3.6484 -4.0723 -2.4660 41 1 2.7230 -6.1090 0.7464 42 1 1.2996 -6.7397 -1.9759 43 1 2.7395 -7.6494 -1.2688 44 1 1.3595 -8.2477 0.7744 45 1 -0.0812 -7.3383 0.0684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716617235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 124.481823 kcal Electronic energy + Delta-G solvation = -30143.075813 eV Core-core repulsion = 26163.854157 eV Total energy + Delta-G solvation = -3979.221656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.60156 -41.27518 -40.40379 -38.28308 -36.61738 -35.10672 -34.58881 -33.80337 -32.80186 -31.30858 -30.59858 -29.52988 -26.20269 -25.52773 -25.08807 -23.35379 -23.07984 -22.47445 -21.99762 -21.59446 -21.25375 -19.52199 -19.25335 -18.46209 -17.92317 -17.08473 -16.72957 -16.59543 -16.45089 -16.18094 -15.77688 -15.65893 -15.31693 -15.13371 -14.91929 -14.69203 -14.44433 -14.30937 -14.15474 -13.69668 -13.67672 -13.49895 -13.19139 -12.85195 -12.69610 -12.48535 -12.31515 -12.04296 -11.85377 -11.67078 -11.42168 -11.27298 -11.13537 -11.08211 -11.00114 -10.95590 -10.59178 -10.20506 -9.80372 -9.32398 -9.02049 -7.93747 -5.24522 -0.53716 -0.07102 1.09455 1.25157 1.45728 1.47024 1.57126 1.77610 1.90444 2.14367 2.54596 2.67133 3.00660 3.29968 3.39525 3.44070 3.58620 3.70871 3.85390 3.95040 3.97370 4.04742 4.12133 4.16088 4.20275 4.32799 4.46580 4.47082 4.57760 4.63155 4.71953 4.80296 4.87396 4.89176 4.98927 5.02408 5.03074 5.12167 5.28896 5.37446 5.39754 5.49196 5.61264 5.62913 6.11461 6.24597 6.42441 6.59955 6.82885 7.32164 7.32902 8.06573 8.30360 9.28690 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008239 B = 0.004330 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.534492 B = 6464.526501 C = 7439.655002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.186 3.814 12 H 0.052 0.948 13 N -0.697 5.697 14 C 0.574 3.426 15 O -0.541 6.541 16 C -0.201 4.201 17 C -0.028 4.028 18 C -0.168 4.168 19 C 0.145 3.855 20 N -0.521 5.521 21 C 0.382 3.618 22 N -0.340 5.340 23 C 0.056 3.944 24 C -0.253 4.253 25 C 0.037 3.963 26 N -0.284 5.284 27 C -0.161 4.161 28 C -0.165 4.165 29 C -0.180 4.180 30 H 0.247 0.753 31 H 0.373 0.627 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.403 0.597 35 H 0.171 0.829 36 H 0.196 0.804 37 H 0.213 0.787 38 H 0.202 0.798 39 H 0.187 0.813 40 H 0.201 0.799 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -16.493 9.877 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.226 1.226 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.081 3.919 12 H 0.070 0.930 13 N -0.347 5.347 14 C 0.360 3.640 15 O -0.419 6.419 16 C -0.209 4.209 17 C -0.054 4.054 18 C -0.188 4.188 19 C -0.014 4.014 20 N -0.235 5.235 21 C 0.154 3.846 22 N -0.119 5.119 23 C -0.083 4.083 24 C -0.281 4.281 25 C -0.153 4.153 26 N -0.101 5.101 27 C -0.181 4.181 28 C -0.202 4.202 29 C -0.217 4.217 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.238 0.762 35 H 0.189 0.811 36 H 0.213 0.787 37 H 0.230 0.770 38 H 0.219 0.781 39 H 0.205 0.795 40 H 0.217 0.783 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.709 -16.435 9.467 19.807 hybrid contribution -0.020 1.215 -0.380 1.273 sum -5.730 -15.220 9.087 18.630 Atomic orbital electron populations 1.69897 1.06776 1.25645 1.59494 1.25590 0.96234 1.01159 1.03764 0.85073 0.78413 0.79819 0.76434 1.18598 1.22560 1.22108 1.19680 0.91578 0.85038 1.41019 0.90121 1.42556 1.05627 1.00960 1.89413 1.21044 0.93294 0.83911 0.99374 1.20483 0.89224 0.93382 0.88837 0.93010 1.45709 1.14177 1.54319 1.20508 1.17800 0.81209 0.78915 0.86106 1.90673 1.75796 1.42142 1.33246 1.20685 0.93512 1.09991 0.96729 1.22122 1.02574 0.91573 0.89126 1.22618 0.93242 1.00612 1.02308 1.23607 0.96405 0.90035 0.91306 1.67079 1.38531 1.17594 1.00274 1.17821 0.88671 0.94985 0.83084 1.45780 1.09268 1.52010 1.04831 1.23319 0.87739 1.00372 0.96905 1.21962 0.99627 1.11839 0.94641 1.24588 0.92908 0.98730 0.99039 1.77797 1.19595 1.20052 0.92678 1.22568 1.01750 0.89865 1.03882 1.22956 1.02653 1.02706 0.91889 1.23152 0.99099 0.97784 1.01638 0.94416 0.79500 0.93922 0.94688 0.76154 0.81128 0.78732 0.77045 0.78127 0.79531 0.78277 0.85681 0.90497 0.86437 0.87602 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.29 5.43 -343.45 -1.87 -40.16 16 10 C 0.15 5.99 5.80 86.38 0.50 6.49 16 11 C 0.19 6.62 2.43 44.99 0.11 6.73 16 12 H 0.05 2.24 7.33 -2.39 -0.02 2.22 16 13 N -0.70 -24.15 4.44 -445.64 -1.98 -26.13 16 14 C 0.57 21.08 5.72 86.72 0.50 21.58 16 15 O -0.54 -22.76 11.27 -3.98 -0.04 -22.80 16 16 C -0.20 -6.43 5.77 -19.89 -0.11 -6.55 16 17 C -0.03 -0.59 9.51 22.72 0.22 -0.38 16 18 C -0.17 -2.46 10.09 22.33 0.23 -2.23 16 19 C 0.14 2.51 11.17 84.73 0.95 3.45 16 20 N -0.52 -14.22 10.02 -191.97 -1.92 -16.15 16 21 C 0.38 12.95 7.38 133.27 0.98 13.93 16 22 N -0.34 -12.56 3.44 -191.54 -0.66 -13.22 16 23 C 0.06 1.67 11.22 83.36 0.93 2.60 16 24 C -0.25 -7.02 10.80 22.01 0.24 -6.78 16 25 C 0.04 1.28 12.02 85.28 1.02 2.30 16 26 N -0.28 -11.95 8.79 -56.95 -0.50 -12.45 16 27 C -0.16 -4.49 5.36 -10.80 -0.06 -4.55 16 28 C -0.16 -4.31 10.18 30.61 0.31 -4.00 16 29 C -0.18 -4.93 9.73 30.61 0.30 -4.63 16 30 H 0.25 15.28 8.31 -92.70 -0.77 14.50 16 31 H 0.37 21.44 7.33 -92.71 -0.68 20.76 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.40 13.19 8.18 -92.71 -0.76 12.44 16 35 H 0.17 2.68 7.99 -2.91 -0.02 2.66 16 36 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.21 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.20 5.90 8.06 -2.91 -0.02 5.88 16 41 H 0.13 2.96 8.11 -2.38 -0.02 2.94 16 42 H 0.08 2.28 8.05 -2.39 -0.02 2.27 16 43 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.09 3.01 5.02 -2.39 -0.01 3.00 16 Total: -1.00 -82.98 381.02 2.36 -80.62 By element: Atomic # 1 Polarization: 51.55 SS G_CDS: -0.40 Total: 51.15 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.42 Total: 11.39 kcal Atomic # 7 Polarization: -162.45 SS G_CDS: -6.65 Total: -169.10 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.04 Total: -22.80 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.98 2.36 -80.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716617235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.103 kcal (2) G-P(sol) polarization free energy of solvation -82.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds