Wall clock time and date at job start Sat Apr 11 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99740 * 2 1 4 4 H 1.48495 * 109.47435 * 270.00141 * 3 2 1 5 5 H 1.48494 * 109.47471 * 30.00570 * 3 2 1 6 6 H 1.48505 * 109.46960 * 150.00407 * 3 2 1 7 7 C 1.38811 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99941 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00168 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47418 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47016 * 65.00055 * 11 10 9 13 13 N 1.46495 * 109.47112 * 304.99942 * 11 10 9 14 14 C 1.34783 * 120.00265 * 154.99642 * 13 11 10 15 15 O 1.21622 * 119.99667 * 354.54136 * 14 13 11 16 16 C 1.47149 * 120.00063 * 174.53925 * 14 13 11 17 17 C 1.37069 * 127.21127 * 5.51052 * 16 14 13 18 18 N 1.33318 * 106.37028 * 179.88113 * 17 16 14 19 19 N 1.28498 * 109.49765 * 0.39007 * 18 17 16 20 20 N 1.28721 * 110.67328 * 359.75398 * 19 18 17 21 21 C 1.40077 * 126.05805 * 180.02562 * 20 19 18 22 22 C 1.38866 * 120.07227 * 44.79562 * 21 20 19 23 23 C 1.38115 * 119.92317 * 179.69973 * 22 21 20 24 24 C 1.38277 * 120.07356 * 0.57517 * 23 22 21 25 25 C 1.38285 * 120.14048 * 359.72574 * 24 23 22 26 26 C 1.38113 * 120.06599 * 359.97229 * 25 24 23 27 27 C 1.52999 * 109.47500 * 185.00078 * 11 10 9 28 28 C 1.53003 * 117.49745 * 248.74917 * 27 11 10 29 29 C 1.52992 * 117.50194 * 180.08925 * 27 11 10 30 30 H 0.96999 * 120.00122 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99946 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47188 * 299.99858 * 10 9 7 33 33 H 1.09000 * 109.47534 * 59.99787 * 10 9 7 34 34 H 0.96999 * 120.00501 * 335.00200 * 13 11 10 35 35 H 1.07993 * 126.81948 * 0.02562 * 17 16 14 36 36 H 1.07997 * 120.03509 * 359.97438 * 22 21 20 37 37 H 1.08005 * 119.95846 * 180.29749 * 23 22 21 38 38 H 1.08001 * 119.92727 * 179.74349 * 24 23 22 39 39 H 1.08000 * 119.96384 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.02898 * 180.02562 * 26 25 24 41 41 H 1.08998 * 115.54621 * 34.41209 * 27 11 10 42 42 H 1.08997 * 117.49745 * 359.97438 * 28 27 11 43 43 H 1.09001 * 117.49654 * 145.01535 * 28 27 11 44 44 H 1.09001 * 117.49684 * 214.98006 * 29 27 11 45 45 H 1.08997 * 117.49865 * 359.97301 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 1 5.8950 -1.6975 0.9286 13 7 5.9509 -1.3237 -1.1344 14 6 7.0488 -0.5436 -1.0843 15 8 7.7066 -0.4845 -0.0630 16 6 7.4517 0.2365 -2.2652 17 6 6.7696 0.3626 -3.4474 18 7 7.5044 1.1614 -4.2217 19 7 8.5690 1.5087 -3.5916 20 7 8.5922 0.9855 -2.4157 21 6 9.6020 1.1517 -1.4592 22 6 10.1279 2.4134 -1.2145 23 6 11.1191 2.5746 -0.2662 24 6 11.5960 1.4797 0.4307 25 6 11.0787 0.2210 0.1849 26 6 10.0831 0.0541 -0.7577 27 6 6.3803 -3.5109 -0.1281 28 6 7.1803 -3.9827 1.0878 29 6 7.9087 -3.4435 -0.1458 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8492 -3.0422 0.8892 33 1 3.8485 -3.0427 -0.8908 34 1 5.3821 -1.3105 -1.9201 35 1 5.8236 -0.0925 -3.7006 36 1 9.7592 3.2682 -1.7619 37 1 11.5251 3.5564 -0.0721 38 1 12.3740 1.6079 1.1687 39 1 11.4530 -0.6321 0.7312 40 1 9.6792 -0.9292 -0.9488 41 1 5.9030 -4.2736 -0.7432 42 1 7.1627 -3.3527 1.9771 43 1 7.2296 -5.0558 1.2723 44 1 8.4369 -4.1622 -0.7725 45 1 8.3700 -2.4590 -0.0684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723334188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:26 Heat of formation + Delta-G solvation = 125.337670 kcal Electronic energy + Delta-G solvation = -29913.643921 eV Core-core repulsion = 25934.459377 eV Total energy + Delta-G solvation = -3979.184544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.73350 -41.16688 -40.27031 -38.52682 -36.77410 -35.88272 -35.12560 -33.55711 -32.70315 -31.99473 -31.04375 -30.02033 -26.26508 -25.48422 -24.91667 -24.00073 -23.21142 -23.07673 -22.75504 -21.62852 -21.42120 -20.16194 -19.55616 -18.36401 -17.93921 -17.48155 -17.40516 -16.74714 -16.51786 -16.22854 -16.05720 -15.76407 -15.66474 -15.12958 -14.94411 -14.78811 -14.74760 -14.51929 -14.08170 -13.94320 -13.56572 -13.37074 -12.95999 -12.87748 -12.78558 -12.59212 -12.45522 -12.44060 -12.29079 -12.15107 -11.85601 -11.81156 -11.47294 -11.17397 -11.05160 -10.99884 -10.79547 -10.16739 -10.03900 -9.83581 -9.32861 -8.04613 -5.37221 -0.67372 0.23060 0.30242 0.82855 1.04522 1.33028 1.34272 1.40497 1.84915 1.87690 2.43205 2.58508 2.91070 3.19489 3.28017 3.33903 3.41371 3.59202 3.76072 3.78177 3.83344 4.02402 4.04985 4.11769 4.14008 4.23744 4.30969 4.37351 4.40005 4.49786 4.60166 4.74432 4.81939 4.86875 4.90663 5.05126 5.07208 5.18048 5.20088 5.27165 5.30834 5.39358 5.40035 5.42648 5.76331 5.84042 6.19218 6.26517 6.87291 7.03799 7.05721 7.80996 7.97767 9.16848 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.004024 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.813290 B = 6956.456705 C = 8153.397751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.052 4.052 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.757 5.757 10 C 0.152 3.848 11 C 0.179 3.821 12 H 0.076 0.924 13 N -0.689 5.689 14 C 0.596 3.404 15 O -0.540 6.540 16 C -0.077 4.077 17 C 0.013 3.987 18 N -0.288 5.288 19 N -0.071 5.071 20 N -0.204 5.204 21 C 0.069 3.931 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.112 4.112 26 C -0.069 4.069 27 C -0.167 4.167 28 C -0.160 4.160 29 C -0.180 4.180 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.414 0.586 35 H 0.232 0.768 36 H 0.130 0.870 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.003 -3.037 -0.565 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.244 4.244 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.357 4.357 8 H 0.086 0.914 9 N -0.403 5.403 10 C 0.026 3.974 11 C 0.075 3.925 12 H 0.094 0.906 13 N -0.340 5.340 14 C 0.380 3.620 15 O -0.418 6.418 16 C -0.210 4.210 17 C -0.147 4.147 18 N -0.150 5.150 19 N -0.050 5.050 20 N 0.005 4.995 21 C -0.020 4.020 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.089 4.089 27 C -0.187 4.187 28 C -0.197 4.197 29 C -0.217 4.217 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.251 0.749 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.175 0.825 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.968 -2.216 -0.885 28.070 hybrid contribution -1.245 0.623 0.211 1.408 sum 26.724 -1.593 -0.674 26.780 Atomic orbital electron populations 1.69841 1.06829 1.26467 1.59834 1.25290 0.95797 1.00344 1.03012 0.85659 0.78215 0.81133 0.78194 1.20043 1.22536 1.19291 1.19036 0.82418 0.93584 1.40691 0.91447 1.42709 1.02603 1.03947 1.91075 1.21076 0.87842 0.87886 1.00646 1.20744 0.93876 0.89110 0.88762 0.90572 1.45683 1.25146 1.41578 1.21562 1.16586 0.81651 0.78712 0.85046 1.90802 1.54172 1.65479 1.31396 1.22232 0.92000 1.06499 1.00258 1.24520 1.02368 0.98882 0.88919 1.74893 1.00429 1.13609 1.26065 1.78329 1.17443 1.18149 0.91080 1.44894 1.14161 1.29570 1.10892 1.17927 0.93105 0.96965 0.94040 1.21217 0.97909 0.94339 0.99000 1.21425 0.95554 1.01376 0.94665 1.21818 0.98990 0.91580 0.98328 1.21384 0.95428 0.99608 0.96672 1.21093 0.95338 0.96980 0.95481 1.22562 0.93770 0.97889 1.04460 1.22997 1.02729 1.02064 0.91935 1.23131 0.93433 1.03304 1.01844 0.93354 0.80409 0.93414 0.93086 0.74899 0.75198 0.85204 0.81806 0.81511 0.82465 0.85854 0.85869 0.89426 0.86847 0.87925 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.28 13.97 21.65 0.30 -60.97 16 2 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 3 Si 0.94 45.44 27.73 68.60 1.90 47.34 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.27 -12.26 6.52 99.48 0.65 -11.61 16 7 C -0.23 -12.17 10.47 84.03 0.88 -11.29 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.76 -32.50 5.24 -343.45 -1.80 -34.30 16 10 C 0.15 4.92 5.80 86.38 0.50 5.42 16 11 C 0.18 4.77 2.45 44.99 0.11 4.88 16 12 H 0.08 2.34 7.26 -2.38 -0.02 2.33 16 13 N -0.69 -17.62 4.49 -446.07 -2.00 -19.62 16 14 C 0.60 16.56 6.61 86.58 0.57 17.13 16 15 O -0.54 -16.46 10.66 -4.10 -0.04 -16.51 16 16 C -0.08 -2.15 6.80 40.36 0.27 -1.87 16 17 C 0.01 0.34 11.55 84.19 0.97 1.31 16 18 N -0.29 -8.69 12.34 -57.47 -0.71 -9.40 16 19 N -0.07 -2.18 12.95 37.02 0.48 -1.70 16 20 N -0.20 -5.84 3.48 -176.72 -0.62 -6.46 16 21 C 0.07 1.75 5.87 38.12 0.22 1.97 16 22 C -0.10 -2.23 9.82 22.39 0.22 -2.01 16 23 C -0.11 -1.63 10.04 22.25 0.22 -1.41 16 24 C -0.09 -1.12 10.04 22.29 0.22 -0.89 16 25 C -0.11 -1.79 10.04 22.25 0.22 -1.57 16 26 C -0.07 -1.53 7.44 22.39 0.17 -1.36 16 27 C -0.17 -3.48 5.36 -10.80 -0.06 -3.54 16 28 C -0.16 -3.01 10.18 30.62 0.31 -2.70 16 29 C -0.18 -3.54 9.75 30.62 0.30 -3.24 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.36 15.57 5.20 -92.70 -0.48 15.08 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 9.54 7.64 -92.71 -0.71 8.83 16 35 H 0.23 4.28 7.56 -2.91 -0.02 4.26 16 36 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.12 2.90 6.10 -2.91 -0.02 2.88 16 41 H 0.12 2.26 8.11 -2.39 -0.02 2.24 16 42 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 2.17 4.57 -2.39 -0.01 2.16 16 Total: -1.00 -72.87 374.97 2.93 -69.94 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.20 Total: 33.40 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.61 Total: -1.72 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -4.34 Total: -132.46 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.04 Total: -16.51 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -72.87 2.93 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723334188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.282 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds