Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99895 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46865 * 64.99727 * 11 10 9 13 13 N 1.46505 * 109.47256 * 305.00012 * 11 10 9 14 14 C 1.34773 * 119.99794 * 154.99941 * 13 11 10 15 15 O 1.21549 * 120.00592 * 359.97438 * 14 13 11 16 16 C 1.47861 * 119.99473 * 179.97438 * 14 13 11 17 17 C 1.39619 * 120.11420 * 359.72177 * 16 14 13 18 18 C 1.37975 * 119.98062 * 179.73956 * 17 16 14 19 19 C 1.38267 * 120.21766 * 0.55982 * 18 17 16 20 20 C 1.38906 * 120.22738 * 359.69829 * 19 18 17 21 21 N 1.40271 * 119.99080 * 179.97438 * 20 19 18 22 22 C 1.36115 * 125.94407 * 359.73906 * 21 20 19 23 23 C 1.35373 * 106.04906 * 179.84602 * 22 21 20 24 24 N 1.33774 * 106.53585 * 0.39967 * 23 22 21 25 25 N 1.28601 * 109.06193 * 359.74419 * 24 23 22 26 26 C 1.38582 * 120.01081 * 0.02562 * 20 19 18 27 27 C 1.52995 * 109.47416 * 184.99500 * 11 10 9 28 28 C 1.52999 * 117.50328 * 248.74749 * 27 11 10 29 29 C 1.53001 * 117.50123 * 180.08608 * 27 11 10 30 30 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 33 33 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 34 34 H 0.96995 * 119.99326 * 334.99678 * 13 11 10 35 35 H 1.07996 * 120.01070 * 0.02723 * 17 16 14 36 36 H 1.08000 * 119.88887 * 180.24948 * 18 17 16 37 37 H 1.08003 * 119.88533 * 179.71042 * 19 18 17 38 38 H 1.08001 * 126.97348 * 359.95762 * 22 21 20 39 39 H 1.07997 * 126.72903 * 180.14659 * 23 22 21 40 40 H 1.08001 * 120.10715 * 180.02562 * 26 20 19 41 41 H 1.09003 * 115.54789 * 34.42328 * 27 11 10 42 42 H 1.08993 * 117.49777 * 0.02562 * 28 27 11 43 43 H 1.09003 * 117.49495 * 145.01900 * 28 27 11 44 44 H 1.09004 * 117.50191 * 214.98494 * 29 27 11 45 45 H 1.09003 * 117.49677 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 6 1.0635 -4.8197 -0.0074 12 1 0.4934 -4.8109 -0.9365 13 7 0.1487 -4.6793 1.1282 14 6 -1.0760 -5.2399 1.0803 15 8 -1.4217 -5.8617 0.0947 16 6 -1.9990 -5.0986 2.2267 17 6 -1.6023 -4.3899 3.3623 18 6 -2.4678 -4.2551 4.4283 19 6 -3.7245 -4.8299 4.3813 20 6 -4.1264 -5.5415 3.2581 21 7 -5.4022 -6.1230 3.2159 22 6 -6.3373 -6.0703 4.2036 23 6 -7.4092 -6.7556 3.7410 24 7 -7.0828 -7.1943 2.5202 25 7 -5.8902 -6.8040 2.2386 26 6 -3.2668 -5.6779 2.1797 27 6 1.8247 -6.1415 0.1113 28 6 1.8291 -7.0662 -1.1076 29 6 1.0022 -7.4315 0.1276 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 2.6811 -3.7119 -0.9007 33 1 2.6878 -3.7173 0.8792 34 1 0.4244 -4.1828 1.9145 35 1 -0.6199 -3.9432 3.4044 36 1 -2.1608 -3.7031 5.3044 37 1 -4.3959 -4.7250 5.2207 38 1 -6.2438 -5.5797 5.1612 39 1 -8.3431 -6.9198 4.2581 40 1 -3.5778 -6.2305 1.3055 41 1 2.7260 -6.1116 0.7237 42 1 1.2901 -6.7327 -1.9942 43 1 2.7333 -7.6449 -1.2970 44 1 1.3625 -8.2504 0.7504 45 1 -0.0814 -7.3384 0.0542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723356830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 143.147428 kcal Electronic energy + Delta-G solvation = -28767.382524 eV Core-core repulsion = 24788.970269 eV Total energy + Delta-G solvation = -3978.412255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.67077 -40.44956 -39.02208 -37.13185 -35.13865 -34.87077 -33.49907 -32.02372 -31.33566 -30.91617 -30.14710 -28.05702 -24.79555 -24.54658 -23.92422 -22.70108 -22.13072 -21.64237 -21.50577 -20.63712 -20.09947 -19.02700 -17.32136 -16.82559 -16.73114 -16.66259 -16.22411 -15.50574 -15.35637 -15.07236 -14.96784 -14.48386 -14.40768 -14.09627 -13.86642 -13.77279 -13.21322 -13.12571 -12.88985 -12.37300 -12.20827 -12.16687 -11.74933 -11.63150 -11.35464 -11.24310 -11.18020 -11.08828 -10.94853 -10.86728 -10.23652 -10.18220 -9.99517 -9.79433 -9.75399 -9.69456 -9.40596 -8.98197 -8.96058 -8.73001 -7.03280 -5.84222 -3.14593 0.21522 0.65845 1.64371 1.93838 2.28723 2.78339 3.18715 3.38073 3.43537 3.44924 3.61436 4.00953 4.06167 4.25644 4.40170 4.49942 4.64055 4.69821 4.73919 4.83442 4.85406 4.91479 5.04371 5.14309 5.23896 5.28052 5.40428 5.48923 5.51328 5.70923 5.74538 5.82866 5.84995 5.89410 5.92361 5.94708 6.04377 6.16548 6.17470 6.33209 6.40447 6.48721 6.53833 6.60073 6.84018 7.62430 7.70515 8.18478 8.33028 8.35918 9.45275 10.00074 10.35505 11.37799 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.003002 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.012529 B = 9323.842345 C =11253.105642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.090 0.910 13 N -0.698 5.698 14 C 0.560 3.440 15 O -0.533 6.533 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.102 4.102 19 C -0.097 4.097 20 C 0.106 3.894 21 N -0.238 5.238 22 C -0.051 4.051 23 C -0.046 4.046 24 N -0.265 5.265 25 N -0.073 5.073 26 C -0.043 4.043 27 C -0.164 4.164 28 C -0.170 4.170 29 C -0.186 4.186 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.404 0.596 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 -13.208 13.457 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.108 0.892 13 N -0.348 5.348 14 C 0.347 3.653 15 O -0.412 6.412 16 C -0.108 4.108 17 C -0.088 4.088 18 C -0.121 4.121 19 C -0.118 4.118 20 C 0.015 3.985 21 N -0.026 5.026 22 C -0.199 4.199 23 C -0.202 4.202 24 N -0.131 5.131 25 N -0.052 5.052 26 C -0.064 4.064 27 C -0.184 4.184 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.240 0.760 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.212 0.788 40 H 0.174 0.826 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.105 -14.095 11.321 19.082 hybrid contribution 0.148 1.806 1.569 2.396 sum -5.958 -12.290 12.890 18.780 Atomic orbital electron populations 1.69669 1.05091 1.25734 1.57293 1.24752 0.95507 0.97713 1.02754 0.86196 0.78609 0.83779 0.77601 1.21679 1.21783 1.20752 1.19201 0.91032 0.83982 1.43251 0.91097 1.42360 1.05987 0.99723 1.89645 1.20927 0.92974 0.84997 0.99126 1.20868 0.90179 0.92968 0.89587 0.89154 1.45853 1.14204 1.53948 1.20755 1.17964 0.81699 0.79276 0.86393 1.90718 1.75888 1.41627 1.32978 1.19921 0.94732 1.00664 0.95488 1.21647 1.00456 0.94817 0.91897 1.20990 0.92420 0.99238 0.99448 1.21039 0.97674 0.96834 0.96206 1.17478 0.82386 1.01035 0.97578 1.44762 1.11632 1.34187 1.11988 1.23839 0.90316 1.07983 0.97755 1.23669 1.00805 1.01707 0.93988 1.75153 1.04663 1.19161 1.14135 1.78469 1.05717 1.09202 1.11773 1.21026 0.91274 0.96663 0.97396 1.22644 1.01474 0.91354 1.02883 1.22899 1.02066 1.03031 0.92734 1.23270 1.00700 0.97381 1.00895 0.93457 0.78013 0.94518 0.95647 0.76025 0.84030 0.83682 0.84434 0.78896 0.78820 0.82650 0.87801 0.88670 0.89160 0.89847 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.36 5.43 -59.91 -0.33 -17.68 16 10 C 0.15 2.74 5.80 -4.04 -0.02 2.72 16 11 C 0.17 2.71 2.43 -67.93 -0.17 2.55 16 12 H 0.09 1.68 7.33 -51.92 -0.38 1.30 16 13 N -0.70 -10.49 4.45 -54.74 -0.24 -10.73 16 14 C 0.56 8.83 7.11 -12.32 -0.09 8.74 16 15 O -0.53 -9.85 13.37 5.32 0.07 -9.78 16 16 C -0.10 -1.38 5.87 -104.99 -0.62 -2.00 16 17 C -0.07 -0.72 9.54 -39.16 -0.37 -1.10 16 18 C -0.10 -0.84 10.02 -39.67 -0.40 -1.24 16 19 C -0.10 -0.80 9.45 -39.32 -0.37 -1.17 16 20 C 0.11 1.21 6.67 -83.62 -0.56 0.65 16 21 N -0.24 -2.84 3.56 -10.50 -0.04 -2.87 16 22 C -0.05 -0.43 10.91 -16.67 -0.18 -0.61 16 23 C -0.05 -0.43 12.05 -17.73 -0.21 -0.64 16 24 N -0.27 -3.63 12.39 30.24 0.37 -3.26 16 25 N -0.07 -1.07 12.41 60.35 0.75 -0.32 16 26 C -0.04 -0.57 9.16 -39.00 -0.36 -0.93 16 27 C -0.16 -2.23 5.36 -90.62 -0.49 -2.72 16 28 C -0.17 -2.19 10.18 -26.69 -0.27 -2.46 16 29 C -0.19 -2.50 9.74 -26.69 -0.26 -2.76 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.81 7.34 -40.82 -0.30 9.51 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 5.54 6.63 -40.82 -0.27 5.27 16 35 H 0.14 1.32 6.40 -52.49 -0.34 0.99 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 0.67 6.75 -52.48 -0.35 0.31 16 38 H 0.19 0.74 7.10 -52.49 -0.37 0.37 16 39 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.16 2.34 7.28 -52.49 -0.38 1.96 16 41 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -34.06 380.17 -8.17 -42.23 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.58 Total: 14.49 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -4.61 Total: -8.00 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.24 Total: -61.32 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.06 -8.17 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723356830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.382 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds