Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00040 * 2 1 4 4 H 1.48496 * 109.47138 * 270.00120 * 3 2 1 5 5 H 1.48503 * 109.46950 * 29.99476 * 3 2 1 6 6 H 1.48500 * 109.47463 * 149.99850 * 3 2 1 7 7 C 1.38818 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99813 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46971 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47475 * 294.99786 * 11 10 9 13 13 N 1.46495 * 109.47430 * 55.00029 * 11 10 9 14 14 C 1.34776 * 120.00573 * 204.99724 * 13 11 10 15 15 O 1.21558 * 119.99682 * 0.02562 * 14 13 11 16 16 C 1.47854 * 120.00253 * 179.97438 * 14 13 11 17 17 C 1.39612 * 120.11660 * 0.02562 * 16 14 13 18 18 C 1.37976 * 119.98631 * 179.97438 * 17 16 14 19 19 C 1.38261 * 120.21463 * 359.97438 * 18 17 16 20 20 C 1.38903 * 120.22994 * 0.02813 * 19 18 17 21 21 N 1.40267 * 119.99158 * 179.97438 * 20 19 18 22 22 C 1.36109 * 125.94632 * 4.71458 * 21 20 19 23 23 C 1.35374 * 106.05437 * 179.84706 * 22 21 20 24 24 N 1.33772 * 106.53361 * 0.40503 * 23 22 21 25 25 N 1.28605 * 109.06242 * 359.74006 * 24 23 22 26 26 C 1.38584 * 120.01095 * 359.69409 * 20 19 18 27 27 C 1.53003 * 109.46999 * 175.00231 * 11 10 9 28 28 C 1.53001 * 117.51964 * 111.28362 * 27 11 10 29 29 C 1.52999 * 60.00190 * 107.47982 * 28 27 11 30 30 H 0.96998 * 119.99897 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00294 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46981 * 59.99936 * 10 9 7 33 33 H 1.08998 * 109.46837 * 299.99928 * 10 9 7 34 34 H 0.97002 * 119.99615 * 24.99601 * 13 11 10 35 35 H 1.08005 * 120.00428 * 359.97438 * 17 16 14 36 36 H 1.08003 * 119.88714 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.88291 * 180.02562 * 19 18 17 38 38 H 1.08005 * 126.97546 * 359.97438 * 22 21 20 39 39 H 1.08000 * 126.72945 * 180.14710 * 23 22 21 40 40 H 1.07998 * 120.10520 * 180.27906 * 26 20 19 41 41 H 1.09002 * 115.54973 * 325.58146 * 27 11 10 42 42 H 1.09001 * 117.49733 * 214.97413 * 28 27 11 43 43 H 1.08995 * 117.49577 * 359.97438 * 28 27 11 44 44 H 1.09004 * 117.50150 * 252.51496 * 29 28 27 45 45 H 1.09004 * 117.51638 * 107.47550 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4982 -4.8135 0.9328 13 7 0.1441 -4.6764 -1.1299 14 6 -1.0803 -5.2372 -1.0780 15 8 -1.4215 -5.8617 -0.0925 16 6 -2.0089 -5.0921 -2.2194 17 6 -1.6198 -4.3750 -3.3523 18 6 -2.4883 -4.2416 -4.4160 19 6 -3.7446 -4.8167 -4.3649 20 6 -4.1410 -5.5321 -3.2421 21 7 -5.4169 -6.1130 -3.1954 22 6 -6.3251 -6.1293 -4.2090 23 6 -7.4058 -6.7911 -3.7329 24 7 -7.1174 -7.1337 -2.4723 25 7 -5.9347 -6.7187 -2.1843 26 6 -3.2741 -5.6768 -2.1707 27 6 1.8249 -6.1412 -0.1245 28 6 1.8346 -7.0697 1.0915 29 6 1.0023 -7.4312 -0.1404 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7145 0.8905 33 1 2.6849 -3.7145 -0.8895 34 1 0.4163 -4.1778 -1.9161 35 1 -0.6390 -3.9247 -3.3959 36 1 -2.1857 -3.6862 -5.2915 37 1 -4.4200 -4.7094 -5.2008 38 1 -6.2067 -5.7029 -5.1942 39 1 -8.3227 -6.9977 -4.2648 40 1 -3.5792 -6.2365 -1.2988 41 1 2.7234 -6.1096 -0.7408 42 1 2.7395 -7.6490 1.2752 43 1 1.2992 -6.7391 1.9814 44 1 -0.0809 -7.3384 -0.0610 45 1 1.3595 -8.2481 -0.7675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723356831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 143.147001 kcal Electronic energy + Delta-G solvation = -28768.068658 eV Core-core repulsion = 24789.656385 eV Total energy + Delta-G solvation = -3978.412274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.66950 -40.44960 -39.02272 -37.13370 -35.14061 -34.87094 -33.49909 -32.02123 -31.33466 -30.91689 -30.14714 -28.05851 -24.79397 -24.54579 -23.92334 -22.70211 -22.12959 -21.64352 -21.50765 -20.63913 -20.10031 -19.02608 -17.32139 -16.82787 -16.73537 -16.65515 -16.22072 -15.51115 -15.35392 -15.07191 -14.96659 -14.48441 -14.41005 -14.09656 -13.86752 -13.77177 -13.21341 -13.12542 -12.88875 -12.37253 -12.20708 -12.16388 -11.75126 -11.63313 -11.35595 -11.24260 -11.17545 -11.08817 -10.95603 -10.86093 -10.23421 -10.18320 -9.99911 -9.79380 -9.75325 -9.69383 -9.40607 -8.98248 -8.96246 -8.73061 -7.03255 -5.84059 -3.14435 0.21712 0.65800 1.64132 1.93954 2.28789 2.78095 3.18746 3.37589 3.43761 3.45448 3.61306 4.01096 4.06245 4.25847 4.40182 4.50016 4.63966 4.69889 4.73951 4.83408 4.85328 4.91463 5.04371 5.14100 5.23972 5.28102 5.40340 5.49069 5.51282 5.70839 5.74508 5.82715 5.84826 5.89408 5.92320 5.94702 6.04321 6.16506 6.17399 6.33114 6.40452 6.48550 6.53878 6.60043 6.84025 7.62492 7.70381 8.18579 8.33078 8.35852 9.45383 10.00140 10.35654 11.37954 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003002 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.438242 B = 9324.560836 C =11245.587993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.091 0.909 13 N -0.698 5.698 14 C 0.560 3.440 15 O -0.533 6.533 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.102 4.102 19 C -0.096 4.096 20 C 0.106 3.894 21 N -0.238 5.238 22 C -0.051 4.051 23 C -0.046 4.046 24 N -0.265 5.265 25 N -0.073 5.073 26 C -0.043 4.043 27 C -0.164 4.164 28 C -0.170 4.170 29 C -0.186 4.186 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.403 0.597 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -13.450 -13.520 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.109 0.891 13 N -0.348 5.348 14 C 0.347 3.653 15 O -0.412 6.412 16 C -0.108 4.108 17 C -0.088 4.088 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.015 3.985 21 N -0.026 5.026 22 C -0.199 4.199 23 C -0.202 4.202 24 N -0.131 5.131 25 N -0.051 5.051 26 C -0.063 4.063 27 C -0.184 4.184 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.240 0.760 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.212 0.788 40 H 0.173 0.827 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.079 -14.234 -11.320 19.175 hybrid contribution 0.179 1.720 -1.635 2.380 sum -5.900 -12.514 -12.955 18.954 Atomic orbital electron populations 1.69665 1.05089 1.25747 1.57290 1.24754 0.95505 0.97710 1.02760 0.86195 0.78701 0.83812 0.77476 1.21722 1.21767 1.20739 1.19200 0.91035 0.83982 1.43245 0.91095 1.42356 1.05987 0.99722 1.89649 1.20930 0.92976 0.84999 0.99126 1.20867 0.90073 0.92964 0.89692 0.89146 1.45854 1.14117 1.53831 1.20963 1.17967 0.81711 0.79299 0.86358 1.90720 1.76109 1.41540 1.32848 1.19917 0.94769 1.00578 0.95547 1.21648 1.00453 0.94810 0.91888 1.20991 0.92416 0.99250 0.99449 1.21040 0.97715 0.96737 0.96239 1.17476 0.82290 1.00996 0.97727 1.44762 1.11905 1.36012 1.09895 1.23838 0.90947 1.07979 0.97141 1.23669 1.00738 1.02572 0.93195 1.75154 1.05559 1.18389 1.14013 1.78478 1.04883 1.10682 1.11097 1.21028 0.91163 0.96746 0.97406 1.22646 1.01503 0.91323 1.02890 1.22888 1.02034 1.03002 0.92796 1.23259 1.00671 0.97410 1.00908 0.93451 0.78010 0.94497 0.95660 0.76029 0.84027 0.83681 0.84434 0.78901 0.78822 0.82663 0.87798 0.89160 0.88669 0.86536 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.36 5.43 -59.91 -0.33 -17.69 16 10 C 0.15 2.74 5.80 -4.04 -0.02 2.72 16 11 C 0.17 2.71 2.43 -67.93 -0.17 2.55 16 12 H 0.09 1.68 7.34 -51.93 -0.38 1.30 16 13 N -0.70 -10.49 4.45 -54.75 -0.24 -10.73 16 14 C 0.56 8.83 7.11 -12.33 -0.09 8.74 16 15 O -0.53 -9.85 13.37 5.31 0.07 -9.78 16 16 C -0.10 -1.38 5.87 -104.99 -0.62 -2.00 16 17 C -0.07 -0.72 9.54 -39.16 -0.37 -1.10 16 18 C -0.10 -0.84 10.02 -39.67 -0.40 -1.24 16 19 C -0.10 -0.80 9.45 -39.33 -0.37 -1.17 16 20 C 0.11 1.21 6.66 -83.62 -0.56 0.65 16 21 N -0.24 -2.84 3.56 -10.50 -0.04 -2.88 16 22 C -0.05 -0.43 10.91 -16.68 -0.18 -0.61 16 23 C -0.05 -0.43 12.05 -17.73 -0.21 -0.64 16 24 N -0.27 -3.64 12.39 30.24 0.37 -3.26 16 25 N -0.07 -1.07 12.42 60.35 0.75 -0.32 16 26 C -0.04 -0.57 9.16 -39.00 -0.36 -0.93 16 27 C -0.16 -2.23 5.36 -90.61 -0.49 -2.71 16 28 C -0.17 -2.19 10.18 -26.73 -0.27 -2.46 16 29 C -0.19 -2.50 9.73 -26.73 -0.26 -2.76 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 5.54 6.63 -40.82 -0.27 5.27 16 35 H 0.14 1.33 6.40 -52.48 -0.34 0.99 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.14 0.67 6.77 -52.48 -0.36 0.32 16 38 H 0.19 0.74 7.12 -52.48 -0.37 0.36 16 39 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.16 2.33 7.29 -52.49 -0.38 1.95 16 41 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 44 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -34.08 380.21 -8.17 -42.25 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.58 Total: 14.48 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -4.61 Total: -8.00 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 1.24 Total: -61.34 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.08 -8.17 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723356831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.401 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds