Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47129 * 240.00201 * 3 2 1 5 5 H 1.48500 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46966 * 120.00383 * 3 2 1 7 7 C 1.37877 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00514 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46902 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.46829 * 180.02562 * 11 10 9 13 13 O 1.42096 * 110.54484 * 68.37544 * 12 11 10 14 14 O 1.42094 * 110.54233 * 291.62271 * 12 11 10 15 15 N 1.65599 * 104.44611 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00318 * 64.99871 * 15 12 11 17 17 H 1.08997 * 109.47225 * 334.99984 * 16 15 12 18 18 C 1.53005 * 109.47252 * 94.99685 * 16 15 12 19 19 C 1.53005 * 109.46471 * 60.00304 * 18 16 15 20 20 C 1.52997 * 109.47151 * 60.00296 * 19 18 16 21 21 C 1.52992 * 109.47214 * 299.99521 * 20 19 18 22 22 C 1.52997 * 109.47533 * 215.00101 * 16 15 12 23 23 H 1.08999 * 109.47857 * 180.02562 * 22 16 15 24 24 N 1.46502 * 109.47030 * 59.99693 * 22 16 15 25 25 C 1.34948 * 126.03993 * 274.99828 * 24 22 16 26 26 C 1.35315 * 107.74520 * 179.97438 * 25 24 22 27 27 C 1.39870 * 107.92205 * 0.02562 * 26 25 24 28 28 N 1.30839 * 108.19862 * 359.97438 * 27 26 25 29 29 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46616 * 60.00284 * 9 7 2 31 31 H 1.08996 * 109.47128 * 300.00397 * 9 7 2 32 32 H 1.08993 * 109.47373 * 60.00280 * 10 9 7 33 33 H 1.08996 * 109.47158 * 300.00052 * 10 9 7 34 34 H 1.09003 * 109.46882 * 59.99952 * 11 10 9 35 35 H 1.08996 * 109.47120 * 299.99908 * 11 10 9 36 36 H 0.97003 * 120.00306 * 245.00300 * 15 12 11 37 37 H 1.08997 * 109.47004 * 300.00593 * 18 16 15 38 38 H 1.08999 * 109.47145 * 179.97438 * 18 16 15 39 39 H 1.08995 * 109.47296 * 299.99823 * 19 18 16 40 40 H 1.09002 * 109.46696 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47191 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47202 * 60.00107 * 20 19 18 43 43 H 1.09005 * 109.47512 * 300.00175 * 21 20 19 44 44 H 1.09001 * 109.47659 * 180.02562 * 21 20 19 45 45 H 1.08007 * 126.12251 * 0.27272 * 25 24 22 46 46 H 1.08001 * 126.03475 * 179.97438 * 26 25 24 47 47 H 1.07997 * 125.89701 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 16 2.6589 -6.3660 -0.0004 13 8 3.3547 -6.4264 1.2370 14 8 3.3564 -6.4262 -1.2369 15 7 1.7085 -7.7221 -0.0019 16 6 0.8502 -8.0138 -1.1527 17 1 0.6169 -7.0867 -1.6763 18 6 1.5778 -8.9670 -2.1030 19 6 1.9051 -10.2684 -1.3679 20 6 0.6084 -10.9212 -0.8847 21 6 -0.1191 -9.9680 0.0654 22 6 -0.4465 -8.6666 -0.6695 23 1 -1.0849 -8.8841 -1.5258 24 7 -1.1431 -7.7539 0.2403 25 6 -0.9188 -7.6289 1.5652 26 6 -1.7636 -6.6842 2.0392 27 6 -2.5309 -6.2161 0.9675 28 7 -2.1596 -6.8565 -0.1113 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 2.8718 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 0.8537 -5.0446 -0.8914 35 1 0.8531 -5.0452 0.8886 36 1 1.7199 -8.3233 0.7592 37 1 2.5015 -8.5019 -2.4472 38 1 0.9390 -9.1844 -2.9590 39 1 2.5436 -10.0514 -0.5117 40 1 2.4238 -10.9473 -2.0448 41 1 0.8416 -11.8485 -0.3615 42 1 -0.0301 -11.1383 -1.7410 43 1 0.5194 -9.7509 0.9218 44 1 -1.0427 -10.4332 0.4101 45 1 -0.1916 -8.1805 2.1426 46 1 -1.8337 -6.3511 3.0642 47 1 -3.2969 -5.4566 1.0212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072728849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -15.839926 kcal Electronic energy + Delta-G solvation = -29153.315423 eV Core-core repulsion = 25271.160159 eV Total energy + Delta-G solvation = -3882.155264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43928 -39.27288 -36.91491 -35.79364 -34.65503 -33.96070 -33.16143 -32.16780 -30.29147 -29.94187 -28.45431 -27.79540 -23.74329 -23.54177 -23.13343 -21.32466 -20.83110 -20.59950 -19.82647 -19.01439 -17.91832 -17.38040 -16.64242 -16.42518 -15.77213 -15.38536 -15.32328 -15.13281 -14.59135 -14.47180 -14.43215 -14.18762 -13.67467 -13.20832 -13.09312 -12.99463 -12.74891 -12.58884 -12.54525 -12.28188 -11.98469 -11.86430 -11.77427 -11.69012 -11.67486 -11.35218 -11.18713 -11.00556 -10.88666 -10.86761 -10.70179 -10.62246 -10.43708 -9.93743 -9.85429 -9.40424 -9.32478 -9.08297 -8.57635 -8.37928 -6.02743 -4.06068 0.42591 1.86538 2.33709 2.76172 2.90470 3.33507 3.37327 3.40452 3.86849 4.00507 4.13736 4.35480 4.42898 4.44464 4.51611 4.62398 4.74163 4.79718 4.89722 4.94105 4.96608 5.07925 5.18616 5.24975 5.29948 5.33338 5.39417 5.51933 5.55617 5.58850 5.72792 5.76426 5.80972 5.91545 5.98986 6.01285 6.04991 6.27011 6.46500 6.66207 6.75252 6.89196 6.96311 7.60257 7.70428 7.71530 7.95029 8.35299 8.99772 9.58297 11.08296 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.003469 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.274923 B = 8069.513977 C = 9308.571446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.034 3.966 10 C -0.103 4.103 11 C -0.603 4.603 12 S 2.597 3.403 13 O -0.963 6.963 14 O -0.959 6.959 15 N -1.117 6.117 16 C 0.146 3.854 17 H 0.094 0.906 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.128 4.128 22 C 0.160 3.840 23 H 0.114 0.886 24 N -0.367 5.367 25 C 0.051 3.949 26 C -0.270 4.270 27 C 0.051 3.949 28 N -0.295 5.295 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.411 0.589 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.167 0.833 46 H 0.146 0.854 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -24.705 0.168 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.143 4.143 11 C -0.735 4.735 12 S 2.694 3.306 13 O -0.953 6.953 14 O -0.949 6.949 15 N -0.875 5.875 16 C 0.037 3.963 17 H 0.112 0.888 18 C -0.175 4.175 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.167 4.167 22 C 0.056 3.944 23 H 0.132 0.868 24 N -0.149 5.149 25 C -0.095 4.095 26 C -0.300 4.300 27 C -0.135 4.135 28 N -0.115 5.115 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.184 0.816 46 H 0.164 0.836 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.269 -24.725 -1.336 24.865 hybrid contribution -0.225 1.125 1.340 1.764 sum -2.494 -23.600 0.005 23.731 Atomic orbital electron populations 1.69954 1.06051 1.26832 1.50410 1.25009 0.94879 0.99287 0.95106 0.86628 0.79587 0.82907 0.78739 1.20143 1.21234 1.20132 1.21213 0.93164 0.90936 1.51277 0.92498 1.19022 0.93415 0.90275 0.97729 1.21484 0.99325 0.91721 1.01746 1.30496 1.16094 1.15705 1.11216 1.05432 0.75653 0.75236 0.74324 1.93576 1.70776 1.85868 1.45103 1.93566 1.70174 1.85659 1.45515 1.55874 1.62022 1.42411 1.27154 1.21157 0.88667 0.99925 0.86526 0.88766 1.22065 1.02236 0.95671 0.97562 1.21541 0.97190 0.96395 1.00805 1.21519 0.96841 0.97883 0.99054 1.21904 1.01716 0.93908 0.99193 1.21533 0.92305 0.87557 0.93012 0.86828 1.48733 1.29011 1.31088 1.06111 1.22403 1.00986 1.00514 0.85573 1.21555 1.03110 1.04155 1.01140 1.23928 1.00101 0.99246 0.90207 1.77402 1.04602 1.06012 1.23524 0.92861 0.96209 0.96106 0.91698 0.91735 0.85846 0.85353 0.75425 0.89091 0.90483 0.91392 0.91265 0.90985 0.91278 0.90866 0.90478 0.81605 0.83575 0.80036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.88 4.97 -27.88 -0.14 0.74 16 10 C -0.10 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C -0.60 -9.88 5.96 37.16 0.22 -9.66 16 12 S 2.60 38.13 5.38 -107.50 -0.58 37.55 16 13 O -0.96 -16.72 18.08 -57.54 -1.04 -17.76 16 14 O -0.96 -16.41 17.10 -57.54 -0.98 -17.40 16 15 N -1.12 -11.34 3.86 -4.89 -0.02 -11.36 16 16 C 0.15 1.34 2.54 -67.93 -0.17 1.17 16 17 H 0.09 0.98 7.15 -51.93 -0.37 0.61 16 18 C -0.14 -1.08 5.64 -26.73 -0.15 -1.23 16 19 C -0.12 -0.77 5.77 -26.73 -0.15 -0.93 16 20 C -0.11 -0.56 5.92 -26.74 -0.16 -0.72 16 21 C -0.13 -0.73 4.66 -26.73 -0.12 -0.86 16 22 C 0.16 1.28 3.00 -67.93 -0.20 1.08 16 23 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 24 N -0.37 -3.88 3.47 -54.86 -0.19 -4.07 16 25 C 0.05 0.51 9.75 -17.22 -0.17 0.34 16 26 C -0.27 -3.05 10.80 -40.01 -0.43 -3.49 16 27 C 0.05 0.65 12.03 -17.36 -0.21 0.44 16 28 N -0.29 -3.95 12.57 30.62 0.39 -3.57 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.12 1.93 7.44 -51.92 -0.39 1.54 16 35 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.41 3.31 6.49 -34.47 -0.22 3.09 16 37 H 0.09 0.91 7.42 -51.93 -0.39 0.53 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 7.44 -51.93 -0.39 0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.38 5.52 -51.93 -0.29 0.09 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.17 1.18 7.13 -52.48 -0.37 0.81 16 46 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -36.19 385.71 -10.59 -46.78 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.45 Total: 2.51 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: -2.24 Total: -29.21 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.91 Total: -45.07 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -2.02 Total: -35.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 38.13 SS G_CDS: -0.58 Total: 37.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.19 -10.59 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072728849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.937 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds