Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47129 * 240.00201 * 3 2 1 5 5 H 1.48500 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46966 * 120.00383 * 3 2 1 7 7 C 1.37877 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00514 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46902 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.46829 * 180.02562 * 11 10 9 13 13 O 1.42096 * 110.54484 * 68.37544 * 12 11 10 14 14 O 1.42094 * 110.54233 * 291.62271 * 12 11 10 15 15 N 1.65599 * 104.44611 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00318 * 64.99871 * 15 12 11 17 17 H 1.08997 * 109.47225 * 334.99984 * 16 15 12 18 18 C 1.53005 * 109.47252 * 94.99685 * 16 15 12 19 19 C 1.53005 * 109.46471 * 60.00304 * 18 16 15 20 20 C 1.52997 * 109.47151 * 60.00296 * 19 18 16 21 21 C 1.52992 * 109.47214 * 299.99521 * 20 19 18 22 22 C 1.52997 * 109.47533 * 215.00101 * 16 15 12 23 23 H 1.08999 * 109.47857 * 180.02562 * 22 16 15 24 24 N 1.46502 * 109.47030 * 59.99693 * 22 16 15 25 25 C 1.34948 * 126.03993 * 274.99828 * 24 22 16 26 26 C 1.35315 * 107.74520 * 179.97438 * 25 24 22 27 27 C 1.39870 * 107.92205 * 0.02562 * 26 25 24 28 28 N 1.30839 * 108.19862 * 359.97438 * 27 26 25 29 29 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46616 * 60.00284 * 9 7 2 31 31 H 1.08996 * 109.47128 * 300.00397 * 9 7 2 32 32 H 1.08993 * 109.47373 * 60.00280 * 10 9 7 33 33 H 1.08996 * 109.47158 * 300.00052 * 10 9 7 34 34 H 1.09003 * 109.46882 * 59.99952 * 11 10 9 35 35 H 1.08996 * 109.47120 * 299.99908 * 11 10 9 36 36 H 0.97003 * 120.00306 * 245.00300 * 15 12 11 37 37 H 1.08997 * 109.47004 * 300.00593 * 18 16 15 38 38 H 1.08999 * 109.47145 * 179.97438 * 18 16 15 39 39 H 1.08995 * 109.47296 * 299.99823 * 19 18 16 40 40 H 1.09002 * 109.46696 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47191 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47202 * 60.00107 * 20 19 18 43 43 H 1.09005 * 109.47512 * 300.00175 * 21 20 19 44 44 H 1.09001 * 109.47659 * 180.02562 * 21 20 19 45 45 H 1.08007 * 126.12251 * 0.27272 * 25 24 22 46 46 H 1.08001 * 126.03475 * 179.97438 * 26 25 24 47 47 H 1.07997 * 125.89701 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 16 2.6589 -6.3660 -0.0004 13 8 3.3547 -6.4264 1.2370 14 8 3.3564 -6.4262 -1.2369 15 7 1.7085 -7.7221 -0.0019 16 6 0.8502 -8.0138 -1.1527 17 1 0.6169 -7.0867 -1.6763 18 6 1.5778 -8.9670 -2.1030 19 6 1.9051 -10.2684 -1.3679 20 6 0.6084 -10.9212 -0.8847 21 6 -0.1191 -9.9680 0.0654 22 6 -0.4465 -8.6666 -0.6695 23 1 -1.0849 -8.8841 -1.5258 24 7 -1.1431 -7.7539 0.2403 25 6 -0.9188 -7.6289 1.5652 26 6 -1.7636 -6.6842 2.0392 27 6 -2.5309 -6.2161 0.9675 28 7 -2.1596 -6.8565 -0.1113 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 2.8718 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 0.8537 -5.0446 -0.8914 35 1 0.8531 -5.0452 0.8886 36 1 1.7199 -8.3233 0.7592 37 1 2.5015 -8.5019 -2.4472 38 1 0.9390 -9.1844 -2.9590 39 1 2.5436 -10.0514 -0.5117 40 1 2.4238 -10.9473 -2.0448 41 1 0.8416 -11.8485 -0.3615 42 1 -0.0301 -11.1383 -1.7410 43 1 0.5194 -9.7509 0.9218 44 1 -1.0427 -10.4332 0.4101 45 1 -0.1916 -8.1805 2.1426 46 1 -1.8337 -6.3511 3.0642 47 1 -3.2969 -5.4566 1.0212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072728849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = -40.761207 kcal Electronic energy + Delta-G solvation = -29154.396091 eV Core-core repulsion = 25271.160159 eV Total energy + Delta-G solvation = -3883.235932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24792 -39.97589 -38.23692 -37.12979 -36.52274 -34.70323 -34.20600 -33.88785 -31.07347 -30.66259 -29.71814 -29.19452 -25.68042 -24.19827 -23.75779 -22.56941 -22.02556 -21.60304 -20.70223 -19.97780 -18.96149 -18.62708 -18.22864 -17.42540 -17.22628 -16.60492 -16.49318 -16.04811 -15.90768 -15.70904 -15.30673 -15.09921 -14.52201 -14.41529 -14.14121 -13.96052 -13.80515 -13.71683 -13.60766 -13.44226 -13.31918 -13.24950 -13.12618 -13.02694 -12.75630 -12.69197 -12.61463 -12.25667 -12.19803 -11.89162 -11.81964 -11.56935 -11.45474 -11.42720 -11.23975 -11.15622 -10.59365 -10.54032 -10.26269 -9.42714 -8.23705 -6.35997 -0.83015 1.01831 1.38614 1.41751 1.49707 1.55357 1.70656 1.99806 2.38356 2.63530 3.09132 3.11814 3.42589 3.44615 3.66679 3.78386 3.86473 3.93914 3.95156 4.11316 4.15143 4.21361 4.29796 4.36063 4.40281 4.52688 4.57268 4.69073 4.75930 4.86762 4.88831 4.96190 5.00657 5.04815 5.13828 5.18746 5.20643 5.30521 5.40123 5.41136 5.52555 5.57310 5.76186 5.78000 5.98108 6.16275 6.21197 6.79028 6.82995 7.33477 8.87633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.003469 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.274923 B = 8069.513977 C = 9308.571446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.037 3.963 10 C -0.102 4.102 11 C -0.607 4.607 12 S 2.633 3.367 13 O -0.984 6.984 14 O -0.980 6.980 15 N -1.098 6.098 16 C 0.141 3.859 17 H 0.079 0.921 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.123 4.123 22 C 0.158 3.842 23 H 0.121 0.879 24 N -0.364 5.364 25 C 0.056 3.944 26 C -0.289 4.289 27 C 0.031 3.969 28 N -0.331 5.331 29 H 0.265 0.735 30 H -0.004 1.004 31 H -0.001 1.001 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.425 0.575 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.199 0.801 46 H 0.157 0.843 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -26.593 0.472 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.080 0.920 9 C -0.001 4.001 10 C -0.141 4.141 11 C -0.737 4.737 12 S 2.727 3.273 13 O -0.974 6.974 14 O -0.970 6.970 15 N -0.861 5.861 16 C 0.033 3.967 17 H 0.097 0.903 18 C -0.174 4.174 19 C -0.159 4.159 20 C -0.146 4.146 21 C -0.162 4.162 22 C 0.055 3.945 23 H 0.138 0.862 24 N -0.146 5.146 25 C -0.090 4.090 26 C -0.319 4.319 27 C -0.154 4.154 28 N -0.152 5.152 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.263 0.737 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.216 0.784 46 H 0.174 0.826 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.332 -26.608 -1.029 26.661 hybrid contribution -0.556 1.636 1.211 2.110 sum -1.888 -24.971 0.182 25.043 Atomic orbital electron populations 1.70082 1.07716 1.27991 1.51036 1.25964 0.95819 1.03314 0.94412 0.85509 0.78356 0.77999 0.79280 1.19177 1.20539 1.19059 1.21693 0.93728 0.92405 1.51516 0.92043 1.18880 0.93819 0.91956 0.95455 1.21278 0.98540 0.92315 1.01975 1.30485 1.16621 1.14837 1.11769 1.04191 0.74926 0.75020 0.73178 1.93541 1.71541 1.86278 1.46086 1.93543 1.70820 1.86028 1.46561 1.55422 1.61705 1.40690 1.28256 1.21317 0.89252 0.99938 0.86191 0.90320 1.22056 1.01318 0.96032 0.98006 1.21558 0.98095 0.95615 1.00629 1.21492 0.95869 0.97904 0.99297 1.21932 1.02398 0.92509 0.99376 1.21761 0.91258 0.87975 0.93474 0.86158 1.48937 1.28314 1.30644 1.06693 1.22903 1.00762 0.99899 0.85468 1.21817 1.03602 1.04934 1.01511 1.24189 1.00767 0.99681 0.90766 1.77326 1.06214 1.07324 1.24336 0.92603 0.98602 0.98225 0.91401 0.91586 0.85494 0.84790 0.73659 0.91297 0.88722 0.91904 0.90354 0.89408 0.90387 0.90011 0.89720 0.78428 0.82574 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.56 -32.41 9.11 25.60 0.23 -32.18 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.04 2.00 4.97 29.85 0.15 2.15 16 10 C -0.10 -4.36 5.16 30.60 0.16 -4.20 16 11 C -0.61 -20.15 5.96 71.98 0.43 -19.72 16 12 S 2.63 75.23 5.38 -56.49 -0.30 74.92 16 13 O -0.98 -32.93 18.08 -127.65 -2.31 -35.24 16 14 O -0.98 -32.96 17.10 -127.65 -2.18 -35.14 16 15 N -1.10 -20.46 3.86 -169.39 -0.65 -21.11 16 16 C 0.14 2.40 2.54 44.99 0.11 2.51 16 17 H 0.08 1.61 7.15 -2.39 -0.02 1.59 16 18 C -0.13 -1.90 5.64 30.60 0.17 -1.72 16 19 C -0.12 -1.19 5.77 30.59 0.18 -1.01 16 20 C -0.11 -0.65 5.92 30.59 0.18 -0.47 16 21 C -0.12 -1.00 4.66 30.59 0.14 -0.86 16 22 C 0.16 2.23 3.00 44.99 0.14 2.36 16 23 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 24 N -0.36 -7.26 3.47 -327.48 -1.14 -8.40 16 25 C 0.06 1.03 9.75 83.54 0.81 1.85 16 26 C -0.29 -6.42 10.80 21.99 0.24 -6.19 16 27 C 0.03 0.81 12.03 85.24 1.03 1.83 16 28 N -0.33 -8.93 12.57 -57.02 -0.72 -9.65 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.13 4.08 7.44 -2.39 -0.02 4.06 16 35 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 36 H 0.42 5.70 6.49 -96.74 -0.63 5.07 16 37 H 0.07 1.31 7.42 -2.39 -0.02 1.30 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.69 7.44 -2.39 -0.02 0.67 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.08 0.53 5.52 -2.38 -0.01 0.52 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.20 2.18 7.13 -2.91 -0.02 2.16 16 46 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -79.04 385.71 -0.23 -79.26 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.33 Total: 20.10 kcal Atomic # 6 Polarization: -59.42 SS G_CDS: 4.43 Total: -54.99 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -2.22 Total: -95.78 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -4.49 Total: -70.38 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 75.23 SS G_CDS: -0.30 Total: 74.92 kcal Total: -79.04 -0.23 -79.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072728849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.501 kcal (2) G-P(sol) polarization free energy of solvation -79.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds