Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47147 * 179.97438 * 11 10 9 13 13 O 1.42095 * 110.54514 * 291.62672 * 12 11 10 14 14 O 1.42104 * 110.53977 * 68.37293 * 12 11 10 15 15 N 1.65598 * 104.45041 * 179.97438 * 12 11 10 16 16 C 1.46507 * 119.99849 * 65.00207 * 15 12 11 17 17 H 1.09008 * 109.46837 * 24.99774 * 16 15 12 18 18 C 1.52998 * 109.47030 * 265.00134 * 16 15 12 19 19 C 1.52999 * 109.47115 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47264 * 59.99701 * 19 18 16 21 21 C 1.53001 * 109.46993 * 300.00379 * 20 19 18 22 22 C 1.52991 * 109.47107 * 144.99722 * 16 15 12 23 23 H 1.08998 * 109.47292 * 60.00304 * 22 16 15 24 24 N 1.46506 * 109.47470 * 299.99880 * 22 16 15 25 25 C 1.34939 * 126.03611 * 275.00399 * 24 22 16 26 26 C 1.35317 * 107.74600 * 179.97438 * 25 24 22 27 27 C 1.39878 * 107.91789 * 359.97438 * 26 25 24 28 28 N 1.30838 * 108.19898 * 359.74261 * 27 26 25 29 29 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 31 31 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 32 32 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 33 33 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 36 36 H 0.96998 * 120.00488 * 244.99676 * 15 12 11 37 37 H 1.08998 * 109.46995 * 299.99467 * 18 16 15 38 38 H 1.08998 * 109.47367 * 59.99972 * 18 16 15 39 39 H 1.08997 * 109.47330 * 299.99771 * 19 18 16 40 40 H 1.09001 * 109.47298 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.47286 * 179.97438 * 20 19 18 42 42 H 1.09007 * 109.46828 * 59.99788 * 20 19 18 43 43 H 1.08997 * 109.46830 * 299.99458 * 21 20 19 44 44 H 1.09005 * 109.46761 * 179.97438 * 21 20 19 45 45 H 1.07999 * 126.13159 * 359.95199 * 25 24 22 46 46 H 1.08001 * 126.04694 * 180.02562 * 26 25 24 47 47 H 1.07996 * 125.89675 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 16 2.6593 -6.3658 0.0004 13 8 3.3552 -6.4263 -1.2370 14 8 3.3570 -6.4260 1.2369 15 7 1.7090 -7.7220 0.0019 16 6 0.8483 -8.0146 -1.1470 17 1 1.2584 -7.5397 -2.0384 18 6 -0.5579 -7.4732 -0.8818 19 6 -1.4566 -7.7782 -2.0819 20 6 -1.5247 -9.2916 -2.2965 21 6 -0.1184 -9.8329 -2.5616 22 6 0.7803 -9.5280 -1.3609 23 1 0.3703 -10.0029 -0.4696 24 7 2.1268 -10.0464 -1.6150 25 6 2.7512 -10.0822 -2.8107 26 6 3.9732 -10.6317 -2.6216 27 6 4.1002 -10.9417 -1.2635 28 7 2.9962 -10.5858 -0.6582 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6242 -2.5567 0.8904 31 1 0.6248 -2.5571 -0.8896 32 1 2.8720 -3.6043 -0.8895 33 1 2.8721 -3.6042 0.8905 34 1 0.8542 -5.0446 0.8914 35 1 0.8534 -5.0451 -0.8886 36 1 1.7222 -8.3227 0.7634 37 1 -0.9679 -7.9481 0.0095 38 1 -0.5094 -6.3951 -0.7294 39 1 -1.0465 -7.3031 -2.9730 40 1 -2.4585 -7.3930 -1.8928 41 1 -2.1653 -9.5089 -3.1511 42 1 -1.9349 -9.7668 -1.4053 43 1 0.2917 -9.3577 -3.4527 44 1 -0.1670 -10.9111 -2.7141 45 1 2.3477 -9.7350 -3.7504 46 1 4.7191 -10.8003 -3.3842 47 1 4.9625 -11.3923 -0.7948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072728853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -23.988966 kcal Electronic energy + Delta-G solvation = -28618.075103 eV Core-core repulsion = 24735.566470 eV Total energy + Delta-G solvation = -3882.508633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44799 -39.15409 -36.92729 -35.80552 -34.97902 -34.57893 -33.26801 -32.32114 -30.14617 -29.89806 -28.35443 -27.52892 -23.81665 -23.43027 -22.92500 -21.46673 -21.09246 -20.80271 -20.01987 -19.18955 -17.91832 -17.47304 -16.95661 -16.67638 -15.93759 -15.45115 -15.21360 -14.88398 -14.75593 -14.47949 -14.27973 -13.95988 -13.77055 -13.57177 -13.39356 -13.17579 -13.13149 -12.76188 -12.15379 -12.08100 -12.06208 -11.96062 -11.89582 -11.78027 -11.74197 -11.52832 -11.43627 -11.10333 -10.84395 -10.81221 -10.79345 -10.74798 -10.16164 -10.13039 -9.96377 -9.63662 -9.39069 -8.67345 -8.60975 -8.39442 -6.43405 -4.13257 0.37165 1.80366 2.28210 2.72488 2.80032 3.42356 3.43953 3.62529 3.86641 3.98128 4.07919 4.29113 4.38428 4.46118 4.50063 4.55434 4.63270 4.69789 4.78861 4.86187 4.89418 4.96430 5.02372 5.16385 5.23337 5.31257 5.34706 5.44012 5.47650 5.52275 5.62314 5.68530 5.70483 5.73268 5.83247 5.92900 5.95160 6.11038 6.27031 6.55788 6.67458 6.82513 6.90874 7.22618 7.35030 7.61917 8.10674 8.38714 8.80453 9.58903 10.97364 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002920 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.615003 B = 9586.286346 C =10670.368613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.608 4.608 8 H 0.052 0.948 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.600 3.400 13 O -0.958 6.958 14 O -0.960 6.960 15 N -1.114 6.114 16 C 0.139 3.861 17 H 0.098 0.902 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.129 4.129 22 C 0.163 3.837 23 H 0.108 0.892 24 N -0.362 5.362 25 C 0.058 3.942 26 C -0.273 4.273 27 C 0.042 3.958 28 N -0.294 5.294 29 H 0.268 0.732 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.418 0.582 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.170 0.830 46 H 0.145 0.855 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -24.518 -6.329 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.646 4.646 8 H 0.070 0.930 9 C -0.019 4.019 10 C -0.137 4.137 11 C -0.746 4.746 12 S 2.696 3.304 13 O -0.948 6.948 14 O -0.950 6.950 15 N -0.870 5.870 16 C 0.030 3.970 17 H 0.116 0.884 18 C -0.185 4.185 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.168 4.168 22 C 0.059 3.941 23 H 0.126 0.874 24 N -0.144 5.144 25 C -0.088 4.088 26 C -0.303 4.303 27 C -0.144 4.144 28 N -0.115 5.115 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.187 0.813 46 H 0.163 0.837 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.970 -22.673 -5.334 23.481 hybrid contribution 0.041 -1.738 -0.465 1.800 sum -2.929 -24.412 -5.798 25.261 Atomic orbital electron populations 1.70802 1.06881 1.30509 1.46567 1.25885 0.96522 1.02812 0.93538 0.83542 0.74921 0.75153 0.76701 1.20700 1.21302 1.21295 1.22074 0.94555 0.91889 1.56084 0.92999 1.19172 0.94141 0.92243 0.96391 1.21359 0.99094 0.91095 1.02199 1.30720 1.16576 1.16339 1.11001 1.05327 0.75581 0.75139 0.74400 1.93573 1.69984 1.85635 1.45586 1.93584 1.70454 1.85805 1.45162 1.55693 1.61580 1.42363 1.27383 1.21251 0.91229 0.95032 0.89517 0.88448 1.22264 0.93817 1.02725 0.99737 1.21589 1.00457 0.95825 0.98320 1.21529 0.95165 0.95945 1.02732 1.21960 0.95389 1.02505 0.96926 1.21534 0.78404 0.93237 1.00927 0.87405 1.48658 1.13070 1.47411 1.05255 1.22442 0.94362 1.00773 0.91205 1.21475 0.98771 1.12623 0.97397 1.23860 0.96942 1.00037 0.93576 1.77307 1.02016 1.17643 1.14535 0.92192 0.97029 0.97064 0.91441 0.91433 0.85254 0.85577 0.74741 0.90296 0.89973 0.91091 0.90568 0.90608 0.91211 0.90386 0.90287 0.81307 0.83730 0.80276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.65 13.65 55.43 0.76 -26.90 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.61 -17.39 9.11 -34.44 -0.31 -17.71 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.47 4.28 -27.88 -0.12 0.35 16 10 C -0.10 -2.03 5.16 -26.73 -0.14 -2.16 16 11 C -0.62 -9.49 5.22 37.16 0.19 -9.30 16 12 S 2.60 40.61 5.44 -107.50 -0.58 40.03 16 13 O -0.96 -17.66 17.39 -57.54 -1.00 -18.66 16 14 O -0.96 -18.18 18.08 -57.54 -1.04 -19.23 16 15 N -1.11 -12.91 5.19 -4.89 -0.03 -12.94 16 16 C 0.14 1.30 2.35 -67.93 -0.16 1.14 16 17 H 0.10 0.99 7.48 -51.92 -0.39 0.61 16 18 C -0.15 -1.09 5.49 -26.73 -0.15 -1.23 16 19 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 20 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 21 C -0.13 -0.72 4.85 -26.70 -0.13 -0.85 16 22 C 0.16 1.34 2.79 -67.91 -0.19 1.15 16 23 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 24 N -0.36 -3.93 3.36 -54.84 -0.18 -4.12 16 25 C 0.06 0.59 10.59 -17.23 -0.18 0.41 16 26 C -0.27 -2.91 10.80 -40.01 -0.43 -3.34 16 27 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 28 N -0.29 -3.79 12.58 30.63 0.39 -3.40 16 29 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 30 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 31 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 35 H 0.13 1.67 6.78 -51.92 -0.35 1.32 16 36 H 0.42 4.49 8.80 -34.47 -0.30 4.19 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.68 5.78 -51.93 -0.30 0.38 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.40 7.16 -51.93 -0.37 0.03 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.17 1.21 7.26 -52.49 -0.38 0.83 16 46 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -38.03 388.65 -10.66 -48.69 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.50 Total: 2.92 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: -2.24 Total: -32.48 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.93 Total: -47.35 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -2.04 Total: -37.88 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Atomic # 16 Polarization: 40.61 SS G_CDS: -0.58 Total: 40.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.03 -10.66 -48.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072728853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.701 kcal (2) G-P(sol) polarization free energy of solvation -38.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds