Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47147 * 179.97438 * 11 10 9 13 13 O 1.42095 * 110.54514 * 291.62672 * 12 11 10 14 14 O 1.42104 * 110.53977 * 68.37293 * 12 11 10 15 15 N 1.65598 * 104.45041 * 179.97438 * 12 11 10 16 16 C 1.46507 * 119.99849 * 65.00207 * 15 12 11 17 17 H 1.09008 * 109.46837 * 24.99774 * 16 15 12 18 18 C 1.52998 * 109.47030 * 265.00134 * 16 15 12 19 19 C 1.52999 * 109.47115 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47264 * 59.99701 * 19 18 16 21 21 C 1.53001 * 109.46993 * 300.00379 * 20 19 18 22 22 C 1.52991 * 109.47107 * 144.99722 * 16 15 12 23 23 H 1.08998 * 109.47292 * 60.00304 * 22 16 15 24 24 N 1.46506 * 109.47470 * 299.99880 * 22 16 15 25 25 C 1.34939 * 126.03611 * 275.00399 * 24 22 16 26 26 C 1.35317 * 107.74600 * 179.97438 * 25 24 22 27 27 C 1.39878 * 107.91789 * 359.97438 * 26 25 24 28 28 N 1.30838 * 108.19898 * 359.74261 * 27 26 25 29 29 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 31 31 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 32 32 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 33 33 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 36 36 H 0.96998 * 120.00488 * 244.99676 * 15 12 11 37 37 H 1.08998 * 109.46995 * 299.99467 * 18 16 15 38 38 H 1.08998 * 109.47367 * 59.99972 * 18 16 15 39 39 H 1.08997 * 109.47330 * 299.99771 * 19 18 16 40 40 H 1.09001 * 109.47298 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.47286 * 179.97438 * 20 19 18 42 42 H 1.09007 * 109.46828 * 59.99788 * 20 19 18 43 43 H 1.08997 * 109.46830 * 299.99458 * 21 20 19 44 44 H 1.09005 * 109.46761 * 179.97438 * 21 20 19 45 45 H 1.07999 * 126.13159 * 359.95199 * 25 24 22 46 46 H 1.08001 * 126.04694 * 180.02562 * 26 25 24 47 47 H 1.07996 * 125.89675 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 16 2.6593 -6.3658 0.0004 13 8 3.3552 -6.4263 -1.2370 14 8 3.3570 -6.4260 1.2369 15 7 1.7090 -7.7220 0.0019 16 6 0.8483 -8.0146 -1.1470 17 1 1.2584 -7.5397 -2.0384 18 6 -0.5579 -7.4732 -0.8818 19 6 -1.4566 -7.7782 -2.0819 20 6 -1.5247 -9.2916 -2.2965 21 6 -0.1184 -9.8329 -2.5616 22 6 0.7803 -9.5280 -1.3609 23 1 0.3703 -10.0029 -0.4696 24 7 2.1268 -10.0464 -1.6150 25 6 2.7512 -10.0822 -2.8107 26 6 3.9732 -10.6317 -2.6216 27 6 4.1002 -10.9417 -1.2635 28 7 2.9962 -10.5858 -0.6582 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6242 -2.5567 0.8904 31 1 0.6248 -2.5571 -0.8896 32 1 2.8720 -3.6043 -0.8895 33 1 2.8721 -3.6042 0.8905 34 1 0.8542 -5.0446 0.8914 35 1 0.8534 -5.0451 -0.8886 36 1 1.7222 -8.3227 0.7634 37 1 -0.9679 -7.9481 0.0095 38 1 -0.5094 -6.3951 -0.7294 39 1 -1.0465 -7.3031 -2.9730 40 1 -2.4585 -7.3930 -1.8928 41 1 -2.1653 -9.5089 -3.1511 42 1 -1.9349 -9.7668 -1.4053 43 1 0.2917 -9.3577 -3.4527 44 1 -0.1670 -10.9111 -2.7141 45 1 2.3477 -9.7350 -3.7504 46 1 4.7191 -10.8003 -3.3842 47 1 4.9625 -11.3923 -0.7948 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072728853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = -50.879908 kcal Electronic energy + Delta-G solvation = -28619.241181 eV Core-core repulsion = 24735.566470 eV Total energy + Delta-G solvation = -3883.674711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20165 -39.81269 -38.31108 -37.20331 -36.83613 -35.35504 -34.32540 -33.90126 -30.93351 -30.53850 -29.35989 -29.06273 -25.54242 -24.32168 -23.63532 -22.76133 -22.17737 -21.55789 -20.78709 -20.29664 -19.16266 -18.78725 -18.33694 -17.67701 -17.33472 -16.65418 -16.03792 -15.82694 -15.68279 -15.52674 -15.45201 -15.18718 -15.03996 -14.66243 -14.27721 -13.98098 -13.90045 -13.85038 -13.69167 -13.48264 -13.34935 -13.30715 -13.19555 -13.04368 -12.63175 -12.61941 -12.49433 -12.24639 -12.02606 -11.95398 -11.92844 -11.63603 -11.52378 -11.49382 -11.36945 -10.80083 -10.58617 -10.57875 -10.22541 -9.45707 -8.72977 -6.44115 -0.91137 1.01167 1.51698 1.55288 1.59248 1.64595 1.79114 1.98605 2.53017 2.61962 3.04690 3.11709 3.36844 3.43749 3.58360 3.72150 3.76738 3.89562 3.99373 4.02215 4.07575 4.15379 4.18707 4.31657 4.36098 4.43371 4.50563 4.61888 4.69413 4.74645 4.81691 4.84321 4.90306 5.03105 5.10990 5.13059 5.17289 5.21725 5.26701 5.30821 5.33680 5.47370 5.77763 5.91470 5.93168 6.13738 6.18823 6.53829 6.80758 7.36390 8.68831 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002920 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.615003 B = 9586.286346 C =10670.368613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.034 4.034 3 Si 1.114 2.886 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.632 4.632 8 H 0.049 0.951 9 C 0.018 3.982 10 C -0.099 4.099 11 C -0.608 4.608 12 S 2.622 3.378 13 O -0.987 6.987 14 O -0.996 6.996 15 N -1.101 6.101 16 C 0.133 3.867 17 H 0.090 0.910 18 C -0.145 4.145 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.122 4.122 22 C 0.160 3.840 23 H 0.113 0.887 24 N -0.366 5.366 25 C 0.052 3.948 26 C -0.290 4.290 27 C 0.026 3.974 28 N -0.330 5.330 29 H 0.259 0.741 30 H 0.001 0.999 31 H 0.004 0.996 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.424 0.576 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.197 0.803 46 H 0.161 0.839 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 -25.260 -7.209 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.232 4.232 3 Si 0.935 3.065 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.670 4.670 8 H 0.068 0.932 9 C -0.020 4.020 10 C -0.139 4.139 11 C -0.739 4.739 12 S 2.717 3.283 13 O -0.977 6.977 14 O -0.986 6.986 15 N -0.861 5.861 16 C 0.025 3.975 17 H 0.108 0.892 18 C -0.185 4.185 19 C -0.162 4.162 20 C -0.147 4.147 21 C -0.161 4.161 22 C 0.057 3.943 23 H 0.131 0.869 24 N -0.148 5.148 25 C -0.095 4.095 26 C -0.319 4.319 27 C -0.159 4.159 28 N -0.151 5.151 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.022 0.978 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.260 0.740 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.214 0.786 46 H 0.179 0.821 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.754 -23.441 -6.209 24.538 hybrid contribution 0.248 -1.575 -0.212 1.608 sum -3.506 -25.016 -6.421 26.064 Atomic orbital electron populations 1.70921 1.07755 1.30060 1.48357 1.27376 0.96662 1.06649 0.92527 0.82974 0.74238 0.71236 0.78051 1.20530 1.19412 1.19582 1.22562 0.94891 0.93720 1.55794 0.93248 1.19101 0.94589 0.92928 0.95391 1.21190 0.98504 0.92260 1.01915 1.30628 1.16522 1.13399 1.13333 1.04418 0.75391 0.75531 0.72939 1.93533 1.71220 1.86283 1.46649 1.93530 1.71981 1.86543 1.46559 1.55322 1.61532 1.40788 1.28462 1.21517 0.91721 0.96117 0.88147 0.89232 1.22280 0.92827 1.02150 1.01229 1.21611 1.00287 0.96883 0.97394 1.21512 0.94658 0.94825 1.03749 1.21968 0.95266 1.03081 0.95780 1.21768 0.77902 0.92070 1.02581 0.86916 1.48896 1.13594 1.47122 1.05142 1.22984 0.94362 1.00089 0.92022 1.21825 0.99618 1.12907 0.97538 1.24314 0.97295 1.00018 0.94302 1.77230 1.02958 1.19025 1.15928 0.93196 0.98053 0.97760 0.91686 0.91998 0.83216 0.83213 0.73985 0.89012 0.90826 0.91233 0.89879 0.89136 0.90496 0.89774 0.89576 0.78606 0.82127 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.65 21.45 0.29 -56.70 16 2 C -0.03 -1.97 5.46 84.65 0.46 -1.51 16 3 Si 1.11 50.29 29.90 68.60 2.05 52.34 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.63 -36.39 9.11 25.60 0.23 -36.15 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.02 0.92 4.28 29.85 0.13 1.05 16 10 C -0.10 -4.11 5.16 30.60 0.16 -3.96 16 11 C -0.61 -18.23 5.22 71.98 0.38 -17.85 16 12 S 2.62 80.92 5.44 -56.49 -0.31 80.61 16 13 O -0.99 -36.21 17.39 -127.65 -2.22 -38.43 16 14 O -1.00 -37.89 18.08 -127.65 -2.31 -40.19 16 15 N -1.10 -24.49 5.19 -169.38 -0.88 -25.37 16 16 C 0.13 2.27 2.35 44.99 0.11 2.38 16 17 H 0.09 1.70 7.48 -2.38 -0.02 1.68 16 18 C -0.15 -1.86 5.49 30.59 0.17 -1.69 16 19 C -0.12 -1.14 5.92 30.59 0.18 -0.96 16 20 C -0.11 -0.68 5.92 30.59 0.18 -0.50 16 21 C -0.12 -1.04 4.85 30.61 0.15 -0.89 16 22 C 0.16 2.35 2.79 45.00 0.13 2.47 16 23 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 24 N -0.37 -7.51 3.36 -327.42 -1.10 -8.61 16 25 C 0.05 0.98 10.59 83.54 0.88 1.87 16 26 C -0.29 -5.90 10.80 21.99 0.24 -5.67 16 27 C 0.03 0.59 12.03 85.24 1.03 1.61 16 28 N -0.33 -8.36 12.58 -57.02 -0.72 -9.08 16 29 H 0.26 15.70 7.22 -92.71 -0.67 15.03 16 30 H 0.00 0.06 8.01 -2.39 -0.02 0.04 16 31 H 0.00 0.21 8.01 -2.39 -0.02 0.19 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.15 3.76 6.78 -2.39 -0.02 3.75 16 36 H 0.42 8.78 8.80 -96.75 -0.85 7.93 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.07 5.78 -2.39 -0.01 1.06 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.08 0.63 7.16 -2.39 -0.02 0.62 16 44 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.20 2.38 7.26 -2.91 -0.02 2.36 16 46 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -82.24 388.65 -0.56 -82.80 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.21 Total: 22.42 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 4.41 Total: -59.80 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -2.40 Total: -99.76 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: -4.53 Total: -78.63 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.05 Total: 52.34 kcal Atomic # 16 Polarization: 80.92 SS G_CDS: -0.31 Total: 80.61 kcal Total: -82.24 -0.56 -82.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072728853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.923 kcal (2) G-P(sol) polarization free energy of solvation -82.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds