Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00318 * 2 1 4 4 H 1.48499 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47135 * 300.00020 * 3 2 1 6 6 H 1.48499 * 109.46820 * 59.99558 * 3 2 1 7 7 C 1.38817 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99661 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46974 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84949 * 45.33483 * 11 10 9 13 13 C 1.53781 * 113.61707 * 176.53042 * 11 10 9 14 14 C 1.53777 * 87.08336 * 140.06298 * 13 11 10 15 15 H 1.08996 * 113.61474 * 220.01758 * 14 13 11 16 16 N 1.46500 * 113.61088 * 89.11940 * 14 13 11 17 17 C 1.34772 * 120.00149 * 155.00452 * 16 14 13 18 18 O 1.21604 * 119.99869 * 359.97438 * 17 16 14 19 19 C 1.47422 * 120.00165 * 179.97438 * 17 16 14 20 20 C 1.41368 * 126.40778 * 359.68649 * 19 17 16 21 21 N 1.30444 * 108.07497 * 179.81489 * 20 19 17 22 22 N 1.39942 * 108.91786 * 0.44795 * 21 20 19 23 23 C 1.39912 * 125.77918 * 179.69370 * 22 21 20 24 24 C 1.39323 * 120.85740 * 179.74177 * 23 22 21 25 25 C 1.38012 * 119.07831 * 179.72923 * 24 23 22 26 26 N 1.31932 * 120.83369 * 0.55242 * 25 24 23 27 27 C 1.31943 * 121.88396 * 359.72056 * 26 25 24 28 28 C 1.37999 * 120.83433 * 359.97438 * 27 26 25 29 29 C 1.34599 * 108.44678 * 359.70657 * 22 21 20 30 30 C 1.53775 * 87.07992 * 334.56762 * 14 13 11 31 31 H 0.97001 * 119.99773 * 0.02562 * 1 2 3 32 32 H 0.96991 * 120.00035 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46950 * 60.00207 * 10 9 7 34 34 H 1.08992 * 109.47264 * 300.00101 * 10 9 7 35 35 H 1.08997 * 113.61673 * 254.61847 * 13 11 10 36 36 H 1.09005 * 113.61396 * 25.51675 * 13 11 10 37 37 H 0.96999 * 119.99703 * 334.99353 * 16 14 13 38 38 H 1.07995 * 125.96046 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.46204 * 359.97438 * 24 23 22 40 40 H 1.07996 * 119.58317 * 180.25529 * 25 24 23 41 41 H 1.08004 * 119.58292 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.46258 * 180.02562 * 28 27 26 43 43 H 1.07998 * 126.31462 * 179.97438 * 29 22 21 44 44 H 1.08993 * 113.61636 * 270.87622 * 30 14 13 45 45 H 1.09008 * 113.61006 * 139.97865 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.2523 -4.6824 -0.7169 13 6 1.7324 -6.2019 -0.0876 14 6 0.6843 -6.6846 0.9289 15 1 1.0864 -7.3618 1.6824 16 7 -0.5457 -7.1854 0.3104 17 6 -1.3172 -8.0737 0.9678 18 8 -0.9921 -8.4598 2.0741 19 6 -2.5553 -8.5771 0.3457 20 6 -3.0628 -8.2174 -0.9238 21 7 -4.1717 -8.8763 -1.1179 22 7 -4.4302 -9.6703 0.0051 23 6 -5.5326 -10.5153 0.1734 24 6 -5.6861 -11.2668 1.3365 25 6 -6.7906 -12.0841 1.4661 26 7 -7.6876 -12.1667 0.5022 27 6 -7.5747 -11.4753 -0.6159 28 6 -6.5026 -10.6308 -0.8202 29 6 -3.4389 -9.4834 0.8962 30 6 0.5859 -5.2248 1.4021 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0023 33 1 2.6839 -3.7149 0.8889 34 1 2.6853 -3.7141 -0.8910 35 1 1.6401 -6.6719 -1.0666 36 1 2.7525 -6.2179 0.2962 37 1 -0.8049 -6.8775 -0.5721 38 1 -2.6095 -7.5214 -1.6140 39 1 -4.9529 -11.2075 2.1273 40 1 -6.9197 -12.6670 2.3660 41 1 -8.3314 -11.5710 -1.3807 42 1 -6.4164 -10.0674 -1.7376 43 1 -3.3512 -9.9550 1.8638 44 1 1.2923 -4.9737 2.1932 45 1 -0.4323 -4.9061 1.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725366408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = 118.817752 kcal Electronic energy + Delta-G solvation = -27348.084323 eV Core-core repulsion = 23368.617054 eV Total energy + Delta-G solvation = -3979.467269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30663 -40.54456 -39.93521 -38.15583 -34.99454 -34.52745 -33.14513 -32.11753 -31.00752 -30.95755 -30.31749 -26.92872 -25.49942 -25.13588 -24.44777 -23.52340 -22.70673 -21.68935 -21.33426 -20.48449 -19.23758 -19.05971 -17.21804 -17.02035 -16.67730 -16.39838 -16.15368 -16.01141 -15.54059 -14.90327 -14.87613 -14.79898 -14.48977 -14.36435 -14.23744 -13.97585 -13.70600 -13.36306 -13.28907 -12.76996 -12.46006 -12.35710 -12.12860 -11.67453 -11.60444 -11.48348 -11.03460 -10.84373 -10.48401 -10.33211 -10.24513 -10.07527 -10.04721 -9.88691 -9.88038 -9.82214 -9.60837 -9.15932 -8.92088 -8.83332 -6.89259 -5.75427 -3.03420 0.02299 0.44983 1.37378 1.54589 1.73593 3.02749 3.15804 3.21697 3.43791 3.49418 3.51700 3.70718 3.83211 4.00677 4.23162 4.27975 4.47940 4.58469 4.58929 4.68937 4.73377 4.82672 4.85128 5.03926 5.11749 5.14528 5.15028 5.19757 5.37875 5.59017 5.73041 5.81565 5.87351 5.88673 5.94394 6.01974 6.11397 6.24784 6.31497 6.32750 6.43128 6.63213 6.79248 6.88949 6.94433 7.32867 7.42170 7.71659 8.11427 8.43886 9.55002 10.14384 10.48670 11.47611 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.001717 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.948154 B =16300.572627 C =17152.339243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.117 3.883 15 H 0.101 0.899 16 N -0.702 5.702 17 C 0.597 3.403 18 O -0.546 6.546 19 C -0.272 4.272 20 C 0.099 3.901 21 N -0.285 5.285 22 N -0.320 5.320 23 C 0.203 3.797 24 C -0.195 4.195 25 C 0.129 3.871 26 N -0.492 5.492 27 C 0.125 3.875 28 C -0.171 4.171 29 C 0.130 3.870 30 C -0.139 4.139 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.202 0.798 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.152 0.848 43 H 0.195 0.805 44 H 0.091 0.909 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -27.188 -0.696 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.012 3.988 15 H 0.119 0.881 16 N -0.352 5.352 17 C 0.384 3.616 18 O -0.424 6.424 19 C -0.286 4.286 20 C -0.091 4.091 21 N -0.101 5.101 22 N -0.093 5.093 23 C 0.102 3.898 24 C -0.218 4.218 25 C -0.028 4.028 26 N -0.201 5.201 27 C -0.032 4.032 28 C -0.193 4.193 29 C -0.016 4.016 30 C -0.177 4.177 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.218 0.782 39 H 0.163 0.837 40 H 0.185 0.815 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.212 0.788 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.783 -28.154 -0.594 30.925 hybrid contribution 1.468 2.072 -0.050 2.540 sum -11.314 -26.082 -0.644 28.438 Atomic orbital electron populations 1.69668 1.05106 1.25459 1.58039 1.24739 0.95525 0.97686 1.03192 0.86124 0.78792 0.84178 0.77160 1.20563 1.21913 1.21911 1.19299 0.91068 0.84274 1.42287 0.91174 1.42347 1.05842 1.00000 1.89387 1.20637 0.93022 0.85227 0.97675 1.22761 0.98998 0.94251 0.97218 0.89448 1.23318 0.98737 0.96600 0.98991 1.21948 0.84348 0.95925 0.96530 0.88132 1.45421 1.24217 1.44466 1.21064 1.17068 0.81753 0.78276 0.84534 1.90786 1.72683 1.59382 1.19584 1.20408 1.01419 1.08554 0.98186 1.24383 0.91991 0.97025 0.95671 1.77299 1.18644 1.08782 1.05394 1.45594 1.17148 1.32902 1.13615 1.17827 0.86093 0.90339 0.95504 1.21969 1.02240 1.00034 0.97550 1.22715 0.88201 0.94402 0.97474 1.67736 1.28781 1.22121 1.01509 1.22801 0.95475 0.90304 0.94583 1.21993 0.94695 1.02177 1.00408 1.23066 0.86722 0.95995 0.95825 1.23413 1.02476 0.94041 0.97793 0.93626 0.78344 0.96216 0.96412 0.91219 0.88656 0.76475 0.78184 0.83654 0.81454 0.81545 0.83040 0.78849 0.89066 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.41 5.60 -59.91 -0.34 -18.74 16 10 C 0.16 3.15 6.09 -4.04 -0.02 3.13 16 11 C -0.11 -1.68 3.63 -89.81 -0.33 -2.01 16 12 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.14 -1.57 7.39 -25.92 -0.19 -1.76 16 14 C 0.12 1.41 4.32 -67.12 -0.29 1.12 16 15 H 0.10 1.28 7.46 -51.93 -0.39 0.89 16 16 N -0.70 -7.53 5.25 -54.10 -0.28 -7.81 16 17 C 0.60 7.23 7.81 -12.52 -0.10 7.13 16 18 O -0.55 -8.40 16.50 5.27 0.09 -8.32 16 19 C -0.27 -2.73 6.13 -105.05 -0.64 -3.38 16 20 C 0.10 0.87 11.50 -16.95 -0.20 0.67 16 21 N -0.28 -2.86 11.87 30.88 0.37 -2.50 16 22 N -0.32 -2.97 3.76 -10.03 -0.04 -3.00 16 23 C 0.20 1.63 6.73 -83.36 -0.56 1.07 16 24 C -0.20 -1.17 9.52 -39.26 -0.37 -1.55 16 25 C 0.13 0.75 11.17 -17.59 -0.20 0.55 16 26 N -0.49 -3.70 10.36 -13.32 -0.14 -3.83 16 27 C 0.13 0.80 11.17 -17.59 -0.20 0.60 16 28 C -0.17 -1.23 9.73 -39.26 -0.38 -1.62 16 29 C 0.13 1.17 10.64 -16.42 -0.17 1.00 16 30 C -0.14 -2.00 7.43 -25.92 -0.19 -2.19 16 31 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 33 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.40 3.37 7.65 -40.82 -0.31 3.06 16 38 H 0.20 1.11 7.50 -52.49 -0.39 0.71 16 39 H 0.15 0.55 6.85 -52.49 -0.36 0.19 16 40 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 42 H 0.15 1.04 7.78 -52.48 -0.41 0.63 16 43 H 0.19 1.28 7.09 -52.49 -0.37 0.90 16 44 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 45 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -36.10 386.76 -8.77 -44.88 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.87 Total: 8.26 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -4.09 Total: -4.61 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.30 Total: -63.51 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.10 -8.77 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725366408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.696 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds